BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27370.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2 2047 0.0 Ahg921770 jgi|Araly1|921770|scaffold_103051.1 1351 0.0 > Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2 Length=1521 Score = 2047 bits (1108), Expect = 0.0 Identities = 1247/1312 (95%), Gaps = 18/1312 (1%) Strand=Plus/Plus Query 1254 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCG 1313 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 228 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTCCGTTCCCG 287 Query 1314 TGGGACTGGGAGAATTTGATCATGTCCAATCAGTCGAAGACTGAAAATGaaaaaaaaCAG 1373 ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 288 TGGGACTGGGAGAATTTGATCATGTCCAATCCGTCAAAGACTGAAAATGAAAAAAGGCAG 347 Query 1374 CAATCTACTGAGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTC 1433 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 348 CAATCTACTGAGTGGGAATTTGAAAAAGGTGATGGAATTGAATCTATAGTTCCAGATTTC 407 Query 1434 TTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCA 1493 |||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||| Sbjct 408 TTAGGCCTTGAGAAAGTCAGTAGTGTCTCTGCCACTAGTTTCTGGCACACTGCTGTATCA 467 Query 1494 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTT 1553 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 468 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGTCAAACGATGCAATCTT 527 Query 1554 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCA 1613 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 528 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTGTCCAGGTGAAGGCA 587 Query 1614 TCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGA 1673 |||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 588 TCCACAGCTCTCGAGGTATCTGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGA 647 Query 1674 AAGCGGACATACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCT 1733 || ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| Sbjct 648 AAACGGACATACTCTGAAGAATTTTGGGGTAGCAACAATAATGACATTTCAGCAGTTTCT 707 Query 1734 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 1793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 767 Query 1794 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGAT 1853 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 768 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTGCTAAGGAT 827 Query 1854 TATCATCGCAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTTGTTGTGAGT 1913 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 828 TATCATCGCAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTATTGTGAGT 887 Query 1914 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGAT 1973 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 888 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTTCATGCTGTATCAGAATTTGAT 947 Query 1974 GAAAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCA 2033 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 948 GAGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGAAAGCCA 1007 Query 2034 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCATACAAGTATG 2093 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1008 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTACGATCGAAGACAGCACACAAGTATG 1067 Query 2094 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACT 2153 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1068 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATGCATGGGGTACCACT 1127 Query 2154 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 2213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 1187 Query 2214 GGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCT 2273 ||||||||||| || | |||| || |||||| |||||||||||||||||||||||| ||| Sbjct 1188 GGCTCTGAGGAGCAGCAGTTTGCTAGTAGCAGCCTCTCTTTCTCTGCGTTTCAAACCTCT 1247 Query 2274 GGTGGGTTCTCAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGC 2333 || |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1248 GGCGGGTTCCCAGCAGGGAAATCCAACGTTCAACTTCCTGACAAAGGTGTGGGAGAATGC 1307 Query 2334 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACTACT 2393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1308 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACGACT 1367 Query 2394 TCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACT 2453 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1368 TCGGATTCACAAGGGATCAAACACAATCCCGTGGCTGAACCACCGCCAATATTTGGCACT 1427 Query 2454 TTCCCTAGTCATTTCATCTGAAAGAGTTAAAAAATGCGAAGTCACTCCATAAAAAGTCGG 2513 ||||||| ||||||||| ||||||||| || | ||||||||||||||||||||||| Sbjct 1428 TTCCCTACTCATTTCATATGAAAGAGT-AA-----G-GAAGTCACTCCATAAAAAGTCGG 1480 Query 2514 GTTGCATCATCCGATGGAGTTTGACAGTTTGTTTTCAAATAAAATAAAAATG 2565 ||||||| || ||||||| | || |||||||||||||||||||||| Sbjct 1481 GTTGCAT--TC-GATGGAG-----C--TT-GTTTTCAAATAAAATAAAAATG 1521 > Ahg921770 jgi|Araly1|921770|scaffold_103051.1 Length=1221 Score = 1351 bits (731), Expect = 0.0 Identities = 1014/1148 (88%), Gaps = 29/1148 (3%) Strand=Plus/Plus Query 1265 AAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGA 1324 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 3 AAATCAACCCATATCTTGAATGGACTGCAGCATGGTATCTTCGTTCCAGTGGGACTGGGA 62 Query 1325 GAATTTGATCATGTCCAATCAGTCGAA-GACTGAAAATGaaaaaaaaCAGCAATCTACTG 1383 || ||||||||||||||||| ||| || | ||| |||||| | || ||||||||||||| Sbjct 63 GAGTTTGATCATGTCCAATCCGTC-AAGGGCTGTAAATGACAGCAAGCAGCAATCTACTG 121 Query 1384 AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTG 1443 |||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||| ||| Sbjct 122 AGTGGGAAATTGAAAAAGGTGACGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTG 181 Query 1444 AGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCAAAAAGCTCGC 1503 ||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||| | Sbjct 182 AGAGAGTCAGTAGTGGCTCTGCCACCAGTTTCTGGCGCACTGCTGTATCAAAAAGCTCAC 241 Query 1504 AGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAA 1563 |||||||||||||| | |||||||||||||| | |||||||||||| ||||||||| ||| Sbjct 242 AGTCGACCTCTATCCATTCATCATCTCCCGAAGTCAAACGATGCAAGCTTGCATCAGAAA 301 Query 1564 GTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTC 1623 |||| ||||||||||||| ||||||| |||||||| ||||| | || |||||||||||| Sbjct 302 GTTCTCCTGGAGATTCTTGCAGCAACGTAGATTTTGTCCAGTTTAAGGCATCCACAGCTC 361 Query 1624 TCGAGGTA-CCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACA 1682 ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 362 CCGAGGTATCC-GTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACA 420 Query 1683 TACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTG 1742 ||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| ||| Sbjct 421 TACTCTGAAGAATATTGGGGTAGAAACAATAATGAAATTTCAGCAGTTTCTATGAAGTTG 480 Query 1743 TTGACTCCATCTGTTGTTGCTCGGAAGAAA-ACCAAATCGTGTGGTCAGAGCATGCAAGT 1801 ||||||||||||||||| ||||||| ||| ||||| |||||||||||||||| ||| Sbjct 481 TTGACTCCATCTGTTGTCACTCGGAA-AAATTCCAAA---TGTGGTCAGAGCATGCTAGT 536 Query 1802 TCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCG 1861 |||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct 537 CCCGCGTTGCCAAATTGATGGTTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 596 Query 1862 CAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTT-GTTGTGAGTGGCCTGG 1920 ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct 597 TAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAG-CGTGAGTGGCCTGG 655 Query 1921 AACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATG-CTGTCTCAGAATTTGATGAAAAG 1979 |||||| |||||||||||||||||||||||||||| | ||||| ||||||||||| ||| Sbjct 656 TACGTCGATTCTGCCAACAGTGTAGCAGGTTCCATGAC-GTCTCTGAATTTGATGATAAG 714 Query 1980 AAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGA 2039 ||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 715 AAACGGAGCTGTCGAAAACGTCTTTCTCATCATAATGCCAGGCGTCGTAAGCCACAAGGA 774 Query 2040 GTATTTCCACTGAATTCAGAGAGGGTGT-TCGATCGAAGACAGCATACAAGTATGTTGTG 2098 |||||| || ||||| |||||||| ||| | ||||||||||||||||||| ||||||||| Sbjct 775 GTATTTTCAGTGAATCCAGAGAGGCTGTAT-GATCGAAGACAGCATACAAATATGTTGTG 833 Query 2099 GAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTAT-ACATGGGGTACCACTTATG 2157 ||||| |||||| |||||||||||||| |||||| || | | ||||||||||||||||| Sbjct 834 GAATGAGTTGTCACTTAACACGAGATCAGAAGAATTGTGTGA-ATGGGGTACCACTTATG 892 Query 2158 AGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 2217 | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 893 ATACAAAGCCTACACAGACAGAAAAAGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 952 Query 2218 CTGAGGACCAACTGTTTACTGGTAGCACCC-TCTCTTTCTCTG-C-GTTTCAAACATCTG 2274 |||||||||| || || || ||| || || | | || ||| | | ||| ||||| || | Sbjct 953 CTGAGGACCAGTTGGTTGCTAGTAACAGCCGTATGTT-CTC-GACAGTT-CAAACCTCAG 1009 Query 2275 GTGGGTTCTCAGCAGGGAAA-TCCAACATTCAACTTCCA-GACAAAGGTGTGGGAGAATG 2332 | |||||| ||||||| ||| ||||| ||||||||| | | | ||| ||||||||||| Sbjct 1010 GCGGGTTCCCAGCAGG-AAAGTCCAAGTTTCAACTTC-ATGGCGAAGCTGTGGGAGAATA 1067 Query 2333 CTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAAC-TA 2391 |||||||| ||||||||||||||| |||||| || |||||||||||||||||||||| | Sbjct 1068 CTCAGGAGTCCTCCATGAATCTCAAGATTTCCACCGTGCTCTCTCTCTTCTGTCAACCT- 1126 Query 2392 CTTCGGAT 2399 |||||||| Sbjct 1127 CTTCGGAT 1134 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102881751745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5