BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27450.3 Length=1292 Score E Sequences producing significant alignments: (Bits) Value Ahg472949 jgi|Araly1|472949|fgenesh2_kg.1__2903__AT1G27450.1 667 0.0 > Ahg472949 jgi|Araly1|472949|fgenesh2_kg.1__2903__AT1G27450.1 Length=1032 Score = 667 bits (361), Expect = 0.0 Identities = 411/435 (94%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 793 GGAAGGTTATTTCGGAGGAGTATTCGTTGGAGTATGGAACAGATACGATTGAGATGCACG 852 |||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 556 GGAAAGTTATTTCAGAGGAGTATTCGTTGGAGTATGGAACAGATACGATGGAAATGCATG 615 Query 853 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCCACGGGTG 912 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 616 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCAACGGGTG 675 Query 913 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAATGTG 972 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 676 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAGTGTG 735 Query 973 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACGTCGCTAT 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 736 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACACCGCTAT 795 Query 1033 TTGTTCTTGTAAAG-TCGGCTGCTTAACAAGAAACTGGAAGAGAAGGTTATTGGATCGAG 1091 |||||||||||| | |||||||||||||||||||| | ||| || |||||||||||| || Sbjct 796 TTGTTCTTGTAA-GCTCGGCTGCTTAACAAGAAACCGAAAGGGAGGGTTATTGGATCAAG 854 Query 1092 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCGTGGGA-TTTGATCCTTGTTGT 1150 |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| Sbjct 855 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCTTGGGGGTTTGATACTTGTTGT 914 Query 1151 TTCAACTTATCATAATTGGTTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCGATTG 1210 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 915 TTCAACTTATAATAATTGGCTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCAATTG 974 Query 1211 CAGTTTCCTATTGTT 1225 |||||||| |||||| Sbjct 975 CAGTTTCCGATTGTT 989 Score = 525 bits (284), Expect = 3e-148 Identities = 300/308 (97%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 411 GCAGCCAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCCAGAATCGCTAAG 470 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 249 GCAGCGAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCGAGAATCGCCAAG 308 Query 471 ATTGCCTCTTCCATTAGAGTCATCCCCGACTTCCCTAAACCAGGAATCATGTTTCAGGAC 530 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 309 ATCGCCTCTTCCATTAGAGTCATCCCCGACTTCCCGAAACCAGGAATCATGTTTCAGGAC 368 Query 531 ATAACGACGCTTCTTCTCGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 590 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 369 ATAACGACGCTTCTTCTAGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 428 Query 591 AGATACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 650 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 AGGTACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 488 Query 651 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAAGAAG 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 489 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAATAAG 548 Query 711 CTACCTGG 718 |||||||| Sbjct 549 CTACCTGG 556 Score = 379 bits (205), Expect = 2e-104 Identities = 238/253 (94%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 112 AGACTTGAAAAGTCATTGATCACGGCTTTTGTCCATTATTCCGTGTTTAAAGTAATTTAC 171 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1 AGACTTGAAAAGTCATTGATCACGGCATTTGTCCATTATTCCGTTTTTAAAGTAATTTAC 60 Query 172 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACAATGCAAACAATAATAATTTCTCCACTTG 231 ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct 61 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACGATGCAAACAATAAT--TT-CTCCACTTG 117 Query 232 TTTCTCATCGTCTCTGTCTTGCTCGTGCTGTTCCTTGCAACCGTCTTCTCAACAACCACC 291 |||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||| Sbjct 118 TTTCTCATCGTCTCTGTCTTGCTCCTGCTGTTCCTCGCTACCGTCTTCCCAACAACTACC 177 Query 292 ACCGTGCTCCTCCTTCGATCCGCCTCTCAAACCACCGTTCAACCACCTCACTCC-GCCTC 350 |||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||| Sbjct 178 ACCGTGCTCCTCCTTCGATCCGTCTCTCAAACCACCGTTCCACCACCTCAC-CCTGCCTC 236 Query 351 TTCTCCTCCGCCG 363 ||||||||||||| Sbjct 237 TTCTCCTCCGCCG 249 Score = 76.8 bits (41), Expect = 4e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1243 TTAATAAGGTGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1286 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 989 TTAATAAGATGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48301735839 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5