BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27480.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921786 jgi|Araly1|921786|scaffold_103067.1 2030 0.0
> Ahg921786 jgi|Araly1|921786|scaffold_103067.1
Length=1339
Score = 2030 bits (1099), Expect = 0.0
Identities = 1261/1340 (94%), Gaps = 8/1340 (1%)
Strand=Plus/Plus
Query 75 TCTGTTTCTTAGAACGAAAATGaaaaaaaTATCTTCAC-ATTATTCGGTAGTCATAGCGA 133
|||||||||||||| ||||||||| || |||||||| | |||| |||||||| || ||
Sbjct 2 TCTGTTTCTTAGAAAGAAAATGAACGAACCATCTTCACGA-TATTTGGTAGTCACAGGGA 60
Query 134 TACTCGTTGTGGTGACGATGACCTCGATGTGTCAAGCTGTGGGTAGCAACGTGTACCCTT 193
| ||||| ||| ||| |||| ||| |||||||||||| |||||| ||||| ||||||
Sbjct 61 TGCTCGTAATGGCGACAATGATCTCCATGTGTCAAGCTATGGGTAATAACGTCTACCCTC 120
Query 194 TGATTCTGGTTCCAGGAAACGGAGGTAACCAGCTAGAGGTACGGCTGGACAGAGAATACA 253
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 121 TGATTCTGGTTCCAGGAAACGGAGGTAACCAGCTAGAGGCAAGACTGGACAGAGAATACA 180
Query 254 AGCCAAGTAGTGTCTGGTGTAGCAGCTGGTTATATCCGATTCATAAGAAGAGTGGTGGAT 313
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 AGCCAAGTAGCGTTTGGTGTAGCAGCTGGTTATATCCGATCCATAAGAAGAGTGGTGGAT 240
Query 314 GGTTTAGGCTATGGTTCGATGCAGCAGTGTTATTGTCTCCCTTCACCAGGTGCTTCAGCG 373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 241 GGTTTAGGCTATGGTTCGATGCGGCAGTGTTATTGTCTCCCTTCACCAGGTGCTTCAACG 300
Query 374 ATCGAATGATGTTGTACTATGA-CCCTGATTTGGATGATTACCAAAATGCTCCTGGTGTC 432
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 301 ATCGAATGATGTTGTACTATGATGCC-GATTTGGATGATTACCAAAATGCCCCTGGTGTC 359
Query 433 CAAACCCGGGTTCCTCATTTCGGTTCGACCAAATCACTTCTATACCTCGACCCTCGTCTC 492
|| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 360 CAGACCCGGGTTCCTCATTTCGGTTCGACCAAATCCCTTCTCTACCTTGACCCTCGTCTC 419
Query 493 CGAGATGCCACATCTTACATGGAACATTTGGTGAAAGCTCTAGAGAAAAAATGCGGGTAT 552
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 420 CGAGATGCCACATCTTACATGGAACATTTGGTGAAAGCTCTAGAGAAAGACTGCGGGTAT 479
Query 553 GTTAACGACCAAACCATCCTAGGAGCTCCATATGATTTCAGGTACGGCCTGGCTGCTTCG 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 480 GTTAACGACCAAACCATCCTTGGAGCTCCATATGATTTCAGGTACGGCCTGGCAGCCTCG 539
Query 613 GGCCACCCGTCCCGTGTAGCCTCACAGTTCCTACAAGACCTCAAACAATTGGTGGAAAAA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCCACCCGTCCCGTGTAGCCTCACAGTTCCTACAAGACCTCAAACAATTGGTGGAAAAA 599
Query 673 ACTAGCAGCGAGAACGAAGGAAAGCCAGTGATACTCCTCTCCCATAGCCTAGGAGGACTT 732
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTAGCAGCGAGAACGAAGGAAAACCAGTGATACTCCTCTCCCATAGCCTAGGAGGACTT 659
Query 733 TTCGTCCTCCATTTCCTCAACCGTACCACCCCTTCATGGCGCCGCAAGTACATCAAACAC 792
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCGTCCTCCATTTCCTTAACCGTACCACCCCTTCATGGCGCCGCAAGTACATCAAACAC 719
Query 793 TTTGTTGCACTCGCTGCGCCATGGGGTGGGACGATCTCTCAGATGAAGACATTTGCTTCT 852
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGTTGCACTCGCTGCACCATGGGGTGGGACGATCTCTCAGATGAAGACATTTGCTTCT 779
Query 853 GGCAACACACTCGGTGTCCCTTTAGTTAACCCTTTGCTGGTCAGACGGCATCAGAGGACC 912
|| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 780 GGAAACACACTTGGTGTCCCTTTAGTTAACCCTTTGCTGGTCAGACCGCAGCAGAGGACC 839
Query 913 TCCGAGAGTAACCAATGGCTACTTCCATCTACCAAAGTGTTTCACGACAGAACTAAACCG 972
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCCGAGAGTAATCAATGGCTACTTCCATCTACCAAAGTGTTTCACGACAGAACTAAACCT 899
Query 973 CTTGTCGTAACTCCCCAGG-TTAACTACACAGCTTACGAGATGGATCGGTTTTTTGCAGA 1031
|||||| |||||||| ||| |||| |||||||||||||||||||||| |||| |||||||
Sbjct 900 CTTGTCATAACTCCC-AGGCTTAAGTACACAGCTTACGAGATGGATCAGTTTCTTGCAGA 958
Query 1032 CATTGGATTCTCACAAGGAGTTGTGCCTTACAAGACAAGAGTGTTGCCTTTAACAGAGGA 1091
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATTGGGTTCTCTCAAGGAGTTGTGCCTTACAAGACAAGAGTGTTGCCTTTAACAGAGGA 1018
Query 1092 GCTGATGACTCCGGGAGTGCCAGTCACTTGCATATATGGGAGAGGAGTTGATACACCGGA 1151
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACTGGTGACTCCGGGAGTGCCAATCACTTGCATATATGGGAGAGGAGTTGATACACCGGA 1078
Query 1152 GGTTTTGATGTATGGAAAAGGAGGATTCGAT-AAGCAACCAGAGATTAAGTATGGAGATG 1210
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1079 GGTTTTGGTGTATGGAAAAGGAGGATTCGATGAA-CAACCAGAGATTAAGTATGGAGATG 1137
Query 1211 GAGATGGGACGGTTAATTTGGCGAGCTTAGCAGCTTTGAAAGTCGATAGCTTGAACACCG 1270
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1138 GAGATGGGACGGTTAATTTGGCGAGCTTAGCAGCTTTGAAAGTCGATAGATTGAAAACCG 1197
Query 1271 TAGAGATTGATGGAGTTTCGCATACATCTATACTTAAAGACGAGATCGCACTTAAAGAGA 1330
||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 TAGAGATTGGTGGAGTCTCGCATACATCTATACTTGAAGACGAGATCGCACTTAAAGAGA 1257
Query 1331 TTATGAAGCAGATTTCAATTATTAATTATGAATTAGCCAATGTTAATGCCGTCAATGAAT 1390
|||||||||||||||| |||||||||| ||||||| |||| ||||||| | | |||||||
Sbjct 1258 TTATGAAGCAGATTTCGATTATTAATTCTGAATTAACCAACGTTAATGTCATGAATGAAT 1317
Query 1391 GAGAGCAGTCAACTATTTCA 1410
||||| ||||||||||||||
Sbjct 1318 GAGAGAAGTCAACTATTTCA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5