BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27730.1

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472978 jgi|Araly1|472978|fgenesh2_kg.1__2932__AT1G27730.1        1312    0.0  


> Ahg472978 jgi|Araly1|472978|fgenesh2_kg.1__2932__AT1G27730.1
Length=915

 Score = 1312 bits (710),  Expect = 0.0
 Identities = 827/880 (94%), Gaps = 21/880 (2%)
 Strand=Plus/Plus

Query  66   AAATCCTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTT  125
            ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  42   AAATCTTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACTTCACCAAGATTAGCTT  101

Query  126  CTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAA  185
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  102  CTCCGATTCCTCCTTTGTTCCAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACCA  161

Query  186  AGGGTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAG  245
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  162  AGGGAAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACCGAGGAGG  221

Query  246  AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC  281

Query  306  CGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACG-TTCTCTTCTTAC  364
            ||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct  282  CGGCGGTAGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGA-GTTTCTCGTCTTAC  340

Query  365  CAAGCTCTCGGTGGTCACAAGGCAAGCCACCGTAAGAACTTATCACAGACTCTCTCCGGC  424
            |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  341  CAAGCTCTCGGTGGCCACAAGGCAAGCCACCGTAAAAACTTATCACAGACTCACTCCGGC  400

Query  425  ---GGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA  481
               |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct  401  GGAGGAGGAGATGATCAGTCGACGTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA  460

Query  482  AGTGGGAAATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTC  541
            |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  461  AGTGGGAAATCACATGTTTGCACGATCTGTCACAAGTCTTTTCCTTCCGGTCAAGCTCTC  520

Query  542  GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACACTAGTAGCGTGTCC  601
            ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| 
Sbjct  521  GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACA--A-CACTAGTAGCGTGTCA  577

Query  602  AACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTC  661
            |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| 
Sbjct  578  AACTCCGAAGGTGCGGGGTCCACTAGCCACGTCAGCAGCAGCCACCGTGGATTTGACCTT  637

Query  662  AACATCCCTCCGATCCCTGAATTCTCGATGGTCAACGGAGACGACGAAGTCATGAGCCCT  721
            || ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct  638  AATATCCCTCCGATCCCTGAATTCTCAACGGTCAACGGAGACGACGAAGTGATGAGCCCT  697

Query  722  ATGCCGGCGAAGAAG-CCTCGGTTTGACTTTCCGGTCAAACTTCAACTTTAAGGAAATTT  780
            ||||||||||||||| || |||||||||||||||||||||||||||| || |||||||| 
Sbjct  698  ATGCCGGCGAAGAAGGCC-CGGTTTGACTTTCCGGTCAAACTTCAACATTGAGGAAATT-  755

Query  781  ACTTAGACGATAAGATTT-------CGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG  833
            ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct  756  ACTTAGACGATAAGATTTGTTTTTTCGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG  815

Query  834  TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTT---CTTGTTCTTTCAT  890
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct  816  TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTTGTTCTTGTTCTTTCAT  875

Query  891  TTTAAAAATTATTAAACCGATTCTTTACCACATATTTTAC  930
            |||||| |||||| |||||||||||||||||||| |||||
Sbjct  876  TTTAAATATTATTCAACCGATTCTTTACCACATAGTTTAC  915



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34615608636


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5