BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27730.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472978 jgi|Araly1|472978|fgenesh2_kg.1__2932__AT1G27730.1 1312 0.0
> Ahg472978 jgi|Araly1|472978|fgenesh2_kg.1__2932__AT1G27730.1
Length=915
Score = 1312 bits (710), Expect = 0.0
Identities = 827/880 (94%), Gaps = 21/880 (2%)
Strand=Plus/Plus
Query 66 AAATCCTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTT 125
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 42 AAATCTTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACTTCACCAAGATTAGCTT 101
Query 126 CTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAA 185
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 102 CTCCGATTCCTCCTTTGTTCCAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACCA 161
Query 186 AGGGTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAG 245
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 162 AGGGAAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACCGAGGAGG 221
Query 246 AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC 281
Query 306 CGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACG-TTCTCTTCTTAC 364
||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 282 CGGCGGTAGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGA-GTTTCTCGTCTTAC 340
Query 365 CAAGCTCTCGGTGGTCACAAGGCAAGCCACCGTAAGAACTTATCACAGACTCTCTCCGGC 424
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 341 CAAGCTCTCGGTGGCCACAAGGCAAGCCACCGTAAAAACTTATCACAGACTCACTCCGGC 400
Query 425 ---GGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA 481
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 401 GGAGGAGGAGATGATCAGTCGACGTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA 460
Query 482 AGTGGGAAATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTC 541
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 461 AGTGGGAAATCACATGTTTGCACGATCTGTCACAAGTCTTTTCCTTCCGGTCAAGCTCTC 520
Query 542 GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACACTAGTAGCGTGTCC 601
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 521 GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACA--A-CACTAGTAGCGTGTCA 577
Query 602 AACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTC 661
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 578 AACTCCGAAGGTGCGGGGTCCACTAGCCACGTCAGCAGCAGCCACCGTGGATTTGACCTT 637
Query 662 AACATCCCTCCGATCCCTGAATTCTCGATGGTCAACGGAGACGACGAAGTCATGAGCCCT 721
|| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 638 AATATCCCTCCGATCCCTGAATTCTCAACGGTCAACGGAGACGACGAAGTGATGAGCCCT 697
Query 722 ATGCCGGCGAAGAAG-CCTCGGTTTGACTTTCCGGTCAAACTTCAACTTTAAGGAAATTT 780
||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||
Sbjct 698 ATGCCGGCGAAGAAGGCC-CGGTTTGACTTTCCGGTCAAACTTCAACATTGAGGAAATT- 755
Query 781 ACTTAGACGATAAGATTT-------CGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG 833
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 756 ACTTAGACGATAAGATTTGTTTTTTCGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG 815
Query 834 TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTT---CTTGTTCTTTCAT 890
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 816 TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTTGTTCTTGTTCTTTCAT 875
Query 891 TTTAAAAATTATTAAACCGATTCTTTACCACATATTTTAC 930
|||||| |||||| |||||||||||||||||||| |||||
Sbjct 876 TTTAAATATTATTCAACCGATTCTTTACCACATAGTTTAC 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5