BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27760.3
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472983 jgi|Araly1|472983|fgenesh2_kg.1__2937__AT1G27760.3 2479 0.0
> Ahg472983 jgi|Araly1|472983|fgenesh2_kg.1__2937__AT1G27760.3
Length=1835
Score = 2479 bits (1342), Expect = 0.0
Identities = 1678/1828 (92%), Gaps = 71/1828 (4%)
Strand=Plus/Plus
Query 1 GTTTCTTCCTTTGGCATCGACGAAAGTCTGAAAACTCTTTTCTCTCCACCTCTTTCTCTC 60
||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1 GTTTCTTCCTTTGGCATAGACGAAAGTCTG-AAACTCTTCTCTCTTGACCTCTTTCTCTC 59
Query 61 T---TACCCCAAACACAAAATCTCCTCTTTAATGGATATATCGCCTCTCCGATCTCATTC 117
| ||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 60 TCGATACCCTAAAC-CAAAATCGCCTCTTTAATGGATAAATCGCCTCTCCGATCTCA--- 115
Query 118 TTCCTCGTTTTTATCTGCCAAACtcttattgctcttcttcttttgtagttttcgtgcttc 177
| || | | ||||||| |||||| | ||||||||||||||||||||| |
Sbjct 116 -T--TC-------T-T-CCAAACTTTTATTG--C-TCTTCTTTTGTAGTTTTCGTG---C 157
Query 178 ttcgatttcttcttcttcagttgtttcCCATCGTCGTAATCcttctagc-tttcggtttc 236
||||| ||| ||||||||||| ||||||||||| |||||||||||| | |||| |||||
Sbjct 158 TTCGA-TTC--CTTCTTCAGTTATTTCCCATCGTTGTAATCCTTCTA-CTTTTCAGTTTC 213
Query 237 t-ttgataattccctttgaattcgtttttcttcttctttcaatttcCGCAAAT-AATCAG 294
| || ||||||||||||||| || | ||| | ||| | || | ||||||
Sbjct 214 TCTT-ATAATTCCCTTTGAA-TC---AAT-TTC--C--GCAA-AT----AATTGAATCAG 258
Query 295 CCGCCGATAAG--ATAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 352
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CCGCCGATAAGACAAAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 318
Query 353 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGATTGTT 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 319 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGGGTGTT 378
Query 413 GAATCCTGGTATGGATGAAGTTACTGTTCTCAAGGATGCTTTGTTAGATCAATCCCTTGA 472
|||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||
Sbjct 379 GAATCCCGGTATGGATGAAGTTACGGTTCACAAAGATGCTTTGTTGGATCAATCCCTTGA 438
Query 473 TGCTCTCTATGAGAAAAGGAGCTCAACTAGAGAGCAAGCTTTGGCCACCATTGTTGACGC 532
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 439 TGCTCTCTATGAGAAAAGGAGTTCAACTAGAGAGCAAGCTTTGGCCTCCATTGTTGACGC 498
Query 533 ATTTAACAGCGACTTGCAGTATGAGTTTGTTGAAAAGAAGTTTGCCACTTTATTGCACCA 592
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 499 ATTCAACAGCGACTTGCAATATGAGTTTGTGGAAAAGAAGTTTGCCACTTTATTGCACCA 558
Query 593 GTGTTTACACTGCACCAAGAAAGGGTCTACTAAGGAGACTTCATTAGCAACTCATGTCAT 652
||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 559 GTGTTTACACTGCACTAAGAAAGGGTCTACTAAGGAGACCGCATTAGCATCTCATGTCAT 618
Query 653 TGGGTTGCTAGCGTTAACTGTTGGACTCGGGGATCATGCACAAGAGGTTTTGGAAGAATC 712
|||||||||||| || ||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 619 TGGGTTGCTAGCATTGACTGTTGGACTAGGGGATCAAGCACAAGAGATTTTGGAAGAATC 678
Query 713 TGTCACTCCTCTGTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 772
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGTCACTCCTCTTTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 738
Query 773 ACTTGAGTGTTTAGCAGTCATAACCTTCGTTGGCGGGAATGATCCAGAGCAAACCGAGAA 832
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 739 TCTTGAGTGTTTAGCAGTCATAACCTTTGTTGGCGGGAATGATCCAGAGCAAACCGAGAG 798
Query 833 ATCTATGCAGATTATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 892
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATCTATGCAAATAATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 858
Query 893 TAAACCTTCACCTGCTGTAATAAGTGCTGTTGTATCTTCCTGGGCTTTTCTGCTCACAAC 952
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 859 TAAACCTTCACCTGCTGTAATTAGTGCTGTTGTCTCTTCCTGGGCGTTTCTGCTCACAAC 918
Query 953 AGTTGATCGGTGGACTCTAGGTCCTAAAATTTTTCAAGAGACTGTAACTTATCTCTCTAC 1012
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 919 AGTTGATCGGTGGACGCTAGGTCCTAAAATTTTTCAAGAGACCGTAACTTATCTCTCTAC 978
Query 1013 ATTGTTGGAAAAGGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTAAT 1072
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 979 ACTGTTGGAAAAAGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTGAT 1038
Query 1073 ATATGAGTTGGGAACTCTAGAGAAGTTCGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1132
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1039 ATATGAGTTGGGAACTCTAGAGAAGTTTGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1098
Query 1133 AGTGAAAGAAGGAGGTGTCTCTCAGGAAGCATTGATGCACATGCATGGCTTGAAAGCTAA 1192
||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1099 AGTGAAAGAAGGAAGTGTGTCCCAGGAGGCATTGATGCACATGCATGGCTTGAAAGCTAA 1158
Query 1193 AGTCACTAAACAAGTTAGAGAGCTCTCTGTAGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1252
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1159 AGTCACTAAACAAGTTAGAGAGCTCTCTGCGGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1218
Query 1253 AGATCTCAACACCCAACGAAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGATA 1312
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 AGATCTCAACACCCAACGGAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGGTA 1278
Query 1313 TGCTCCTGAAACCTCAACAAAAGTCGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1372
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1279 CGCTCCTGAAACCTCAACAAAAGTTGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1338
Query 1373 GATGATACAGTTGAATTATTTGAAGCATTTCCTAGGGGGTGGCTTTATTAAGCATATGCA 1432
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1339 GATGATACAGTTAAATTATTTGAAGCATTTCCTTGGGGGCGGCTTTATTAAGCATATGCA 1398
Query 1433 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1458
Query 1493 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTTAACAAAGCAAG 1552
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1459 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTCAACAAAGCAAG 1518
Query 1553 AACGCAGTTCCTGGCCAAGCAAAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1612
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1519 AACGCAGTTCCTGGCCAAGCAGAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1578
Query 1613 AGCTACAGCAATG--G-AGGAAGAATGATGGCTCTACAATTGATTTTTGAAGAATGATGG 1669
||| ||||||||| | |||||||||||| ||| | ||||||||||| |||| | ||
Sbjct 1579 AGCGACAGCAATGATGGAGGAAGAATGATCGCTTTTCAATTGATTTT-GAAGCTT--TG- 1634
Query 1670 CACACTCATCTGCTGCTTTTGGAAAATGTTGTTGT-TCCATTAGTAC-AC--TTTTTCTT 1725
||||||||||||||||||||||||| ||||||||| || |||| ||| || ||||||||
Sbjct 1635 CACACTCATCTGCTGCTTTTGGAAAGTGTTGTTGTATC-ATTACTACTACACTTTTTCTT 1693
Query 1726 GTTTCATGTTTTTGATTTGATAATTGGTTCCA--ATATTATAACCAACTCTTAGAAATGT 1783
|||||||||||||||| | | ||||||||| |||||||||||||| ||||||||| |
Sbjct 1694 GTTTCATGTTTTTGAT---A-A-TTGGTTCCATCATATTATAACCAACACTTAGAAATCT 1748
Query 1784 CTTTTCATTTATAACAATTTTCGACCGT 1811
||||||| ||||||||||||||||||
Sbjct 1749 CTTTTCAC--ATAACAATTTTCGACCGT 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72561916725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5