BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28120.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473019 jgi|Araly1|473019|fgenesh2_kg.1__2973__AT1G28120.1 1801 0.0
> Ahg473019 jgi|Araly1|473019|fgenesh2_kg.1__2973__AT1G28120.1
Length=1259
Score = 1801 bits (975), Expect = 0.0
Identities = 1173/1264 (93%), Gaps = 31/1264 (2%)
Strand=Plus/Plus
Query 117 CAATCCAATCTTTTCTTCAATCGATCTTCGTTTCTGATCAAGCTAATAATAAGCTAGGAA 176
||| |||||||||||||||||||||||||||||| | | || | |||||||||||| |
Sbjct 18 CAACCCAATCTTTTCTTCAATCGATCTTCGTTTCAGGTAAATCCGCTAATAAGCTAGG-A 76
Query 177 GAGAGTTTAGTGAAGTAGTGAAGATGCAGAATCAGATTGATATGGTGAAGGATGAAGCGG 236
||||||| ||| | ||||| |||||||||||||| | | | | ||||||||||||
Sbjct 77 -AGAGTTTGGTG-A--AGTGAGGATGCAGAATCAGAATCAGA--AT-CAGGATGAAGCGG 129
Query 237 AAGTAGCTGCATCGATTTCAGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCAGT-G 295
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 130 AAGTAGCTGCATCGATTTCGGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCACTCG 189
Query 296 --GA------AGATCAACCATCTTTTCAAGAAGAAGAAGCTGCTAAAGTTCCTTATGTTG 347
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 190 AAGATGCTTTGGATCAACCATCTTTTCAAGAAGATGAATCTGCTAAAGTTCCTTATGTTG 249
Query 348 GTGATAAGGAACCTCTGTCTAGTTTAGCTGCAGAGTATCAATCAGGGAGTCCCATTTTGC 407
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 250 GTGATAAGGAACCTCTCTCTAGTTTAGCTGCAGAGTACCAATCAGGGAGTCCCATTTTGC 309
Query 408 TGGAGAAGATTAAGATACTGGACAGTCAATATATCGGAATCCGGCGAACAAGAGGAGATG 467
| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 310 TCCAGAAGATAAAGATACTGGACAGTCAATATATCGCAATCCGGCGAACAAGAGGCGATG 369
Query 468 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCATATATTGGAATCACAAG 527
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 370 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCACATTTTGGAATCACAAG 429
Query 528 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 489
Query 588 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGTTGTTCCTTGAGCAACTAG 647
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 490 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGCTGTTCCTTGAGCAACTAG 549
Query 648 ATGACATTCTCCAAGGAACTGAAGAGTCTATAAGCTACGATGAGCTGGTTAACAGAAGTA 707
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 550 ATGACATTCTCCAAGGAACTGAGGAGTCTATAAGCTACGATGAGCTGGTTAACAGGAGTA 609
Query 708 GAGATCAGTCAGTCTCAGATTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGTGATA 767
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 610 GAGATCAGTCAGTCTCAGACTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGGGATA 669
Query 768 TACGAACGCGTGCCGATTTTTTCGAGCCTTTTATAACAGGCTTATCAAATGCAACAGTGG 827
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 670 TACGAACGCGTGCAGATTTTTTCGAGCCCTTTATAACAGGCTTATCAAATACAACAGTGG 729
Query 828 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 789
Query 888 CTGCTTTGTCGGACGCACTTGGTGTTGCAATCCGTGTTGTGTATCTTGACCGTAGCTCAT 947
|||||||||| ||||| || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 790 CTGCTTTGTCAGACGCGCTCGGTGTTGCAATCCGGGTTGTATATCTTGACCGTAGCTCAT 849
Query 948 GTGATAGTGGGGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCATTACCAATG 1007
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 850 GTGATAATGGAGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCACTACCAATG 909
Query 1008 AGAAAGATGAAGAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 1067
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AGAAAGA--A-GAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 966
Query 1068 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGGAAATGATCATTTG 1127
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 967 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGAAAATGATCATTTG 1026
Query 1128 ACATATCGTAAATCGCATTAGGAGACGTTTACAAAAAACTGTGGTAATATGGATTCATGT 1187
||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 1027 ACAAATCGTAAATCGCATTAAGAGATGTTTACAAAAA-CTGTGGTAATATGGATTCATGT 1085
Query 1188 GGATGAAACCATGGAACAATCAACAATTACCCCATCGATTTGCATTTTGATTATGATAAA 1247
|||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||
Sbjct 1086 GGATGAAACCATGGAACAATCAACAATTACATAATCTATTTGC-TC--GATTATGATAAA 1142
Query 1248 AGAACCCTTTTTGCAACACTATAGAATGGACCGTCTCTTTACTTTGATATTGCCTTGTAT 1307
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1143 AGAACCCTTTTTGCAACATTATAGAATGGACCGTCTCTTTACTTTGATACTGTCTTGTAT 1202
Query 1308 TTTTCATGAATCATGATAATATCCTTTATGATATTTCTGATGAGCAAGTGGAATCAAAGG 1367
||||||||| | | | || | |||| ||||||||||||||||||||||||| ||||||
Sbjct 1203 TTTTCATGA-T-A-G-TA-T--CCTTCGTGATATTTCTGATGAGCAAGTGGAACCAAAGG 1255
Query 1368 GTTT 1371
||||
Sbjct 1256 GTTT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5