BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28200.1 Length=1094 Score E Sequences producing significant alignments: (Bits) Value Ahg921869 jgi|Araly1|921869|scaffold_103150.1 1218 0.0 > Ahg921869 jgi|Araly1|921869|scaffold_103150.1 Length=824 Score = 1218 bits (659), Expect = 0.0 Identities = 759/807 (94%), Gaps = 7/807 (1%) Strand=Plus/Plus Query 62 AAATCATGAGTGGGCAAGAGAATCATGATC-ATGGCCGGA--TC-TCTTCTACGCCCGCC 117 |||||||||||||||||||||||||||| | |||| |||| || |||||||| |||||| Sbjct 17 AAATCATGAGTGGGCAAGAGAATCATGA-CGATGGTCGGATCTCTTCTTCTACTCCCGCC 75 Query 118 GCCGCGTCGGAGCCTTCCAAGGCTGCTGCTCACTCCTCTGACTACGCTCCTTACCCTAAG 177 ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 76 GCCGCGTCGGAGCCTTCAAAGGCACCTTCTCACTCCTCTGACTACGCTCCTTACCCTAAG 135 Query 178 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 195 Query 238 ACCACCATGCCAG-CGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 296 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 ACCACCATGCC-GTCGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 254 Query 297 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCTGCCGACGCCACCAA 356 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 255 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCAGCCGATGCCACCAA 314 Query 357 GAAGGCGGAGGATCTCGCCGGAAATTTTTGGCAGCACTTGAAAACAGGCCCAAGTGTAGC 416 |||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 315 GAAGGCAGAGGATCTCGCCGGAAACGTTTGGCAACACTTGAAAACAGGCCCTAGTGTAGC 374 Query 417 AGATGCTGCTGTTTCACGAATTGCTCAGGGGACAAAAATACTTGCAGAGGGTGGATACGA 476 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || Sbjct 375 CGATGCTGCTGTCTCACGAATTGCTCAGGGGACAAAAATACTTGCGGAAGGTGGATATGA 434 Query 477 GAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAAAAACTTCTCAAGACCTATGC 536 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 435 AAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAGAAACTTCTCAAGACCTATGC 494 Query 537 TTGCTACTTGTCTACATCTGCTGGTCCTGTCCTGGGAGTTATGTATCTTTCGACTCACAA 596 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 495 TTGCTACTTGTCTACATCTGCTGGTCCTGTGATGGGAGTTATGTATCTTTCGACTCACAA 554 Query 597 GCTTGCGTTCTCTAGTGACAATCCTCTCTCTTACAAAGAGGGTGAGCAGACCCTGTGGAG 656 |||||| |||| |||||| | |||||||||||||||||||||||||||||| | |||||| Sbjct 555 GCTTGCCTTCTGTAGTGATACTCCTCTCTCTTACAAAGAGGGTGAGCAGACTCAGTGGAG 614 Query 657 CTATTACAAGGTGGTACTTCCGGCGAATCAGCTGAAGGCAGTGAACCCATCAACAAGTAG 716 ||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| || Sbjct 615 CTATTACAAGGTGGTACTTCCAGTGAACCAGCTGAAGGCAGTGAATCCATCAACAAGCAG 674 Query 717 AGTGAACACATCTGATAAATACATACAAGTGATTTCCATCGACAACCACGAGTTCTGGTT 776 |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 675 AGTGAACACATCAGAGAAATACATACAAGTGATTTCCATTGACAACCACGAGTTCTGGTT 734 Query 777 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCGGTGCAGTCACA 836 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 735 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCTGTGCAGTCACA 794 Query 837 TGGTCCGTGAAGGTCCACTGGTATAAA 863 |||||| ||| ||| |||| ||||||| Sbjct 795 TGGTCCATGAGGGTTCACTAGTATAAA 821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40753398273 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5