BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28310.2
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2 2560 0.0
Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1 102 7e-21
> Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2
Length=1613
Score = 2560 bits (1386), Expect = 0.0
Identities = 1561/1639 (95%), Gaps = 38/1639 (2%)
Strand=Plus/Plus
Query 1 CCAGAACAAGAAGATGCCTATCATCAGCTCTCCCAACACCAATCCACTGGCGAGTATGCA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAGAAGAAGAAGATGCCTATCATCAGCTCTCCCAACACCAATCCACTGGCGAGTATGCA 60
Query 61 AAGCAAGAACATGATCGTGGCTTCATCTCATCAGCAGCAACAACAACAGCAACCGCAGCA 120
||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 61 AAGCAAGAACATGATCGTGGCTTCATCTCAT---CAG---------CAGCAACCGCAGCA 108
Query 121 GCCACAACCGCAACTTAAATGCCCTCGTTGCGATTCTTCCAACACAAAGTTCTGCTACTA 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 109 GCCACAACCGCAACTTAAATGCCCTCGTTGTGATTCTTCCAACACAAAGTTCTGTTACTA 168
Query 181 CAACAACTACAGCCTCTCTCAACCACGGCACTTTTGCAAGGCTTGCAAGAGGTACTGGAC 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 169 CAACAACTACAGCCTCTCTCAGCCACGGCACTTTTGCAAGGCTTGCAAGAGGTACTGGAC 228
Query 241 GAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGGGGTAGCTACCGGAAGAACAAACGTGT 300
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 229 GAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGCGGTAGCTACCGGAAAAACAAACGGGT 288
Query 301 AAAGCGGCCATCAACCGCAACCACAACCACTGCCTCCACCGTCTCGACGACTAATTCTTC 360
|||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 289 AAAGCGGCCATCAAACGCAACCGCAACCGCTGCCTCCACCGTCTCGACGACTACTTCTTT 348
Query 361 ATCCCCTAATAACCCTCATCAGATCTCTCATTTCTCTTCCATGAATCATCATCCTTTGTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 349 ATCCCCTAATAACCCTCATCAGATCTCTCATTTCTCTTCCATGAATCATCATCCCTTGTT 408
Query 421 CTATGGTTTATCAGATCATATGAGCAGTTGTAATAATAATCTTCCAATGATCCCAAGCCG 480
||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 409 CTATGGTTTATCAGATCATCTGAGCAGTTG---TAATAATCTTCCAATGATTCCAAGCCG 465
Query 481 TTTCAGTGATTCTTCAAAGACTT-GTTCATCAAGTGGTTTAGAGAGTGAGTTTCTCTCAT 539
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 466 TTTCAGTGATTCTTCAAAGACTTCG-TCAACAAGTGGTTTAGAGAGTGAGTTTCTCTCAT 524
Query 540 CTGGTTTTAGCAGTCTTAGTGCTCTTGGATTAGGGCTTCCGCATCAGATGAGTCATGACC 599
|||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 525 CTGGGTTTAGCAGTCTTAGTGCTCTTGGATTAGGGCATCCGCATCATATGAGTCATGACC 584
Query 600 ACACCATTAATGGTAGCTTCATCAACAACTCCACAACAAACAAACCCTTTCTTCTATCGG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 585 ACACCATTAATGGTAGCTTCATCAACAACTCCACAACAAACAAACTCTTTCTTCTATCGG 644
Query 660 GTCTATTCGGATCCTCGATG------TCTTCTTC-T-T-CTACTCTTCTCCAGCACCCAC 710
|||||||||||||||||||| |||||||| | | ||||||||||||||||||||
Sbjct 645 GTCTATTCGGATCCTCGATGTCTTCTTCTTCTTCTTCTCCTACTCTTCTCCAGCACCCAA 704
Query 711 ATAAACCCATGAACAATGGTGGTGACATGTTGGGACAATCCCATCTCCAAACCCTAGCAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ATAAACCCATGAACAATGGTGGTGACATGTTGGGACAATCCCATCTCCAAACCCTAGCAT 764
Query 771 CACTTCAAGATTTGCATGTTGGAGGTAACAATGAAGATATGAAGTACAAAGAAGGAAAGC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CACTTCAAGATTTGCATGTTGGAGGTAACAATGAAGATATGAAGTACAAAGAAGGAAAGC 824
Query 831 TTGATCAGATCTCTGGGAACATCAATGGGTTCATGTCATCATCATCATCTTTGGATCCTT 890
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 825 TTGATCAGATCTCTGGGAACATCAATGGGTTCATGTCATCATCATC-T-TT-GGATCCTT 881
Query 891 CAAACTACAACAACATGTGGAATAATGCAAGTGTTGTCAATGGAGCATGGCTTGATCCAA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CAAACTACAACAACATGTGGAATAATGCAAGTGTTGTCAATGGAGCATGGCTTGATCCAA 941
Query 951 CAAATAATAACGTTGGATCCTCCCTCACCTCTTTGATATAAACCAAAACTTTGGTTATAT 1010
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 942 CAAATAATAACGTTGGATCCTCCCTCACCTCCTTGATATAAACCAAAACTTTGGTTATAT 1001
Query 1011 GATCTATAACTAGGTAGGGTTTATCTTTCtttttttcctttttGTTATGAGATGAGAGAA 1070
||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 1002 GATCTATAACTAGCTAGGGTTTATCTTT-TTTT---CCTTTTTGTTTTGAGATGAGAGAA 1057
Query 1071 GAAGCTTGGATCAGAGAGATCTAATCAGGGGAAATGTTGATCTTGGCACTATAAAGCTCC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 GAAGCTTGGATCAGAGAGATCTAATCAGGGGAAATGTTGATCTTGGCACTATAAAGCTCC 1117
Query 1131 CTCGGATCCTCTTCATCTCACCATCTCAATCATCTTCCTTCGCGTAGTTCAACaaaaaac 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1118 CTCGGATCCTCTTCATCTCACCATCTCAATCATCTTCCTTCGCGTAGTTCAAGGAAAAAC 1177
Query 1191 aaaaaGGGTTCAAGATTGGTTCAAGGTTTACTATGGTCT-CTTGTTAAGTTTACTCGAGG 1249
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1178 AAAAGGGGTTCAAGATTGGTTCAAGGTTTACTATGGTCTACT-GTTAAGTTTACTCGAGG 1236
Query 1250 TAAATGATATGTGTATGTACATAATATGGTCCTGACTTTGATCTTTTTC-CTTTTCTCTT 1308
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1237 TAAATGATATGTGTATGTACATAATATGGTCCTGACTTTGATCTTTTTTTCTTTT-TCTT 1295
Query 1309 TCCCATCTGTGTAATTCTAAGGTCCACCACATGGGTTGGTGTTTCTTTTCATTGGGATTA 1368
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1296 TCCCATCTATGTAATTCTAAGGTCCACCACATGGGTTGGTGTTTCTTTTCATTTGGATTA 1355
Query 1369 GGAGGGTATATTTGGATTAATTTGGGTTTCTCATGGGGTCAGAGAACTCAATAgtttaat 1428
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1356 GGAGGGTATATTTGGCTTAATTTGGGTTTCTCATGGGGTCCGAGAACTCAATAGTTTAGT 1415
Query 1429 ttcaagttttatatctgttttttagtttcacatttctttttttGGTGTGGCTTTCATTGG 1488
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1416 TTCAAGTTTTATATCTTTTTTTTAGTTTCACATTTCTTTTTT-GGTGTGGCTTTCATTGG 1474
Query 1489 GTATACAAACAGAGGGAGGGGTGTGGTTTTGTGTTGTTATAACTTTTGTTATTCATGTAT 1548
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1475 GTATACAAACAGAGGGAGGGGTGTGGTTTTCTATTGTTATAACTTTGGTTATTCATGTAT 1534
Query 1549 GAGTTATGTTCTTACGGTGCTTTTGGATACATGCATGTTTGTGTATATATATTTAAATGT 1608
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1535 GAGTTATGTTCTTACGGTGCTTTTGGAAACATGCATGTTTGTGTATATATACGTAAATGT 1594
Query 1609 GGATGACTTGAATTGGCTG 1627
|||||||||||||||||||
Sbjct 1595 GGATGACTTGAATTGGCTG 1613
> Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1
Length=941
Score = 102 bits (55), Expect = 7e-21
Identities = 134/170 (79%), Gaps = 13/170 (8%)
Strand=Plus/Plus
Query 135 TTAA-ATGCCCTCGTTGCGATTCTTCCAACACAAAGTTCTGCTACTACAACAACTACAGC 193
|||| |||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 181 TTAAGATGCCCTCGTTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGT 240
Query 194 CTCTCTCAACCACGGC-ACTTTTGCAAGGCTTG-CAAGAGGTACTGGACGAGAGGTGGGA 251
|||||||| || || | |||| ||||| |||| | ||| || ||||| | ||| || |
Sbjct 241 CTCTCTCAGCCTCG-CTACTTCTGCAAATCTTGTCG-GAGATATTGGACTAAAGGCGGAA 298
Query 252 CTCTCAGGAA-CGTTCCCG-TAGGGGGTAGCT-ACCGGAAGA-ACAAACG 297
||| | ||| | | ||| | || ||| ||| ||||||| | |||||||
Sbjct 299 -TCTTAAGAAACAT-CCCAATCGGTGGT-GCTTACCGGAA-ACACAAACG 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5