BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28330.5
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473046 jgi|Araly1|473046|fgenesh2_kg.1__3000__AT1G28330.1 545 2e-154
> Ahg473046 jgi|Araly1|473046|fgenesh2_kg.1__3000__AT1G28330.1
Length=789
Score = 545 bits (295), Expect = 2e-154
Identities = 361/390 (93%), Gaps = 15/390 (4%)
Strand=Plus/Plus
Query 3 GTTTCACTGTCTACAAAATCATTGAAGATCTACCCaaaaaaaaaaaaaaaGAGATGGTTC 62
|||||||||||||||||||||||||||| | | || ||||||||| |||||||||
Sbjct 1 GTTTCACTGTCTACAAAATCATTGAAGAGC-AACC------AAAAAAAAA-AGATGGTTC 52
Query 63 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 112
Query 123 GCCTCCGTAAGATCACCACCCAACCCATTAATATCCGAGATATAGGAGAAGGGAGCAGCA 182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 113 GCCTCCGTAAGATCACCACCCAACCCATTAATATCAGAGATATAGGAGAAGGGAGCAG-- 170
Query 183 GTAAGGTGGTGATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCTGGAACTCCAA 242
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 171 -TAAGGTG---ATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCCGGAACTCCGA 226
Query 243 CGACTCCAACCACTCCGACGACGCCACGTAAGGATAACGTGTGGAGGAGCGTCTTTAATC 302
|||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 227 CGACCCCGACCACTCCGACCACTCCACGTAAGGATAACGTGTGGAGGAGTGTCTTTAATC 286
Query 303 CGGGAAGCAACCTCGCCACTAGAGCCATCGGCTCCAACATCTTTGATAAACCCACCCATC 362
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 287 CGGGAAGCAACCTCGCCACTAGAGCTATCGGCTCCAACATATTCGATAAACCCACCCATC 346
Query 363 CAAATTCTCCCTCCGTCTACGACTGCGTTG 392
|||||||||| |||||||||||||| ||||
Sbjct 347 CAAATTCTCCATCCGTCTACGACTG-GTTG 375
Score = 514 bits (278), Expect = 4e-145
Identities = 351/383 (92%), Gaps = 17/383 (4%)
Strand=Plus/Plus
Query 498 GGTTGTACAGCGGTGACTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 557
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGTTGTACAGTGGTGAGTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 430
Query 558 ATGCGGGTGATGTAAATATGGTGACCTGATCTTCCGCCACCTTACTTTGttttttttATA 617
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 431 ATGCGGGTGATGTAAATATGGTGACCAGATCTTCCGCCACCTTACTTTTTTTTTTTTTTA 490
Query 618 TTGTTTTTGTGTACTTTATCAGAGTGGATAAAGTGACG-GGGAATGTTTTTCTTTTGTAC 676
||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
Sbjct 491 CTGTGTTTGTGTACTTTATCAGAGTGGATAAAGTGACGAGGGA-TGCTTTTCTTTTGTGC 549
Query 677 AAAAAACTGTCTTCCCACCT---A---A-GCAATGTGTGTTAGTTTCTGTTTTGGGCTGT 729
| |||||||||| ||||||| | | ||||||||| |||||||||||||||||||||
Sbjct 550 ATAAAACTGTCT-CCCACCTGGCACCTATGCAATGTGTATTAGTTTCTGTTTTGGGCTGT 608
Query 730 GTTTTGCAAGTTTTT-------GTATTTCAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 782
||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 609 GTTTTGCAAGTTTTTTCTTTTTGTATTTTAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 668
Query 783 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCTTTTGCTTTAATGTTAA 842
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 669 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCGTTTGCTTTAATGTTCA 728
Query 843 ATAAATAAGCATACTTTTGCTAG 865
||||||||||||| |||||||||
Sbjct 729 ATAAATAAGCATATTTTTGCTAG 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32023250280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5