BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28440.1
Length=3357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473063 jgi|Araly1|473063|fgenesh2_kg.1__3017__AT1G28440.1 5208 0.0
> Ahg473063 jgi|Araly1|473063|fgenesh2_kg.1__3017__AT1G28440.1
Length=3337
Score = 5208 bits (2820), Expect = 0.0
Identities = 3179/3351 (95%), Gaps = 30/3351 (1%)
Strand=Plus/Plus
Query 14 cactctcttcttcatactctct-tatctctctctctttcttcAACCACCGTCATAGATAC 72
||||||||||||||||||| || | ||||||| |||||| |||| || || | ||
Sbjct 1 CACTCTCTTCTTCATACTCACTCTCTCTCTCTTTCTTTCCTCAA-CA----CA-A-CCAC 53
Query 73 CGGGGAAGACGAAGAAACATGTAtcttctctttctcttcttacttttccccaccgtcttc 132
| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 54 C--GTCAGAAGAAGAAAGATGTATCTTCTCTTTCTCTTCTTACTTTTTCCCACCGTCTTC 111
Query 133 tctcttAACCAAGACGGTTTCATTCTTCAACAAGTCAAGCTCTCGT-TAGACGACCCAGA 191
||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||| ||
Sbjct 112 TCTCTCAACCAAGACGGTTTTATTCTTCAACAAGTCAAGCTCTC-TCTAGACGACCCTGA 170
Query 192 CTCATATCTCTCTTCCTGGAACTCCAACGATGCTTCTCCTTGTCGGTGGTCCGGCGTTTC 251
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 171 CTCATATCTCTCTTCCTGGAACTCCAACGATGATTCTCCTTGTCGGTGGTCCGGCGTTTC 230
Query 252 CTGCGCCGGTGATTTCTCCTCCGTCACTTCCGTAGACCTCTCCAGCGCTAATCTCGCCGG 311
||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 231 CTGCGCCGGTGATTTCTCCTCCGTCACTTCCGTCGACCTTTCCGGTGCTAATCTCGCCGG 290
Query 312 ACCTTTTCCTTCAGTCATTTGTCGTCTCTCTAATCTGGCTCATCTCTCTTTGTACAATAA 371
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACCTTTTCCTTCCGTCATTTGTCGTCTCTCTAATCTGGCTCATCTCTCTTTGTACAATAA 350
Query 372 CTCCATCAACTCTACTCTTCCTCTCAACATCGCTGCTTGTAAGAGTCTTCAAACTCTCGA 431
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 351 CTCCATCAACTCTACTCTTCCTCTCAACATCGCTGCTTGTAAAAGTCTTCAAACTCTCGA 410
Query 432 TCTCTCTCAGAATCTACTCACCGGTGAGCTTCCACAAACTCTTGCCGATATTCCGACTTT 491
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 TCTCTCTCAGAATCTCCTCACCGGTGAGATTCCACAAACTCTTGCCGATATTCCGACTTT 470
Query 492 GGTTCACTTAGATTTGACCGGTAACAACTTTTCCGGTGACATTCCGGCGAGTTTCGGCAA 551
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 471 GGTTCACTTAGATTTGACCGGTAACAACTTTTCCGGTGACATCCCGGCGAGTTTCGGAAA 530
Query 552 ATTCGAAAACCTAGAGGTTCTTTCTCTTGTTTACAATCTCTTAGACGGTACGATTCCTCC 611
||| |||||||| || ||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct 531 ATTTGAAAACCTTGAAGTTCTCTCTCTTGTCTACAATCTCTTTGACGGCACGATTCCTCC 590
Query 612 GTTTCTCGGCAACATCAGCACGTTGAAGATGCTGAATCTTTCGTATAACCCCTTTAGTCC 671
||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct 591 GTTTCTCGGCAACATCAGCTCCTTGAAGATGCTGAATCTTTCGTATAACCCGTTTAAACC 650
Query 672 GAGTCGGATCCCGCCGGAGTTCGGGAACTTGACGAATCTCGAGGTTATGTGGCTCACTGA 731
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 651 GAGTCGGATCCCGCCGGAGCTCGGAAACTTGACGAATCTCGAGGTTATGTGGCTCACCGA 710
Query 732 GTGTCATTTAGTCGGACAGATCCCTGACTCGCTGGGTCAACTCAGTAAACTCGTTGATTT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTGTCATTTAGTCGGACAGATCCCTGACTCGCTGGGTCAACTCAGTAAACTCGTTGATTT 770
Query 792 AGACCTTGCGCTCAACGACCTTGTAGGTCATATTCCTCCTTCGCTCGGTGGTTTGACTAA 851
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGACCTTGCGCTCAACGACCTTGTAGGTCATATTCCTCCTTCGCTCGGTGGTTTGACTAA 830
Query 852 CGTCGTTCAGATTGAGCTGTACAACAACTCGTTGACCGGAGAGATTCCACCGGAGCTCGG 911
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CGTCGTTCAGATTGAGCTATACAACAACTCGTTGACCGGAGAGATTCCACCGGAGCTCGG 890
Query 912 GAATTTGAAATCGTTGAGACTTCTCGACGCGTCGATGAATCAGTTAACCGGGAAAATACC 971
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 891 GAATTTGAAATCGTTGAGACTTCTCGACGCGTCGATGAATCAGTTAACCGGAAAAATACC 950
Query 972 GGACGAGCTTTGCCGTGTGCCGTTGGAGAGTTTGAATCTCTACGAGAACAATCTAGAAGG 1031
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 TGACGAGCTTTGCCGTGTGCCGTTGGAGAGTTTGAATCTCTATGAGAACAATCTAGAAGG 1010
Query 1032 TGAGCTTCCGGCGAGTATAGCGTTATCTCCGAACTTGTACGAGATTAGAATATTCGGAAA 1091
||| |||||||||||||||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 1011 TGAACTTCCGGCGAGTATAGCGTTATCTCCGAACCTGTACGAGCTTAGGATCTTCGGAAA 1070
Query 1092 CCGGTTAACCGGTGGATTACCAAAAGACCTCGGTCTAAACTCGCCGTTGAGATGGTTGGA 1151
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1071 CCGGTTAACCGGCGAATTACCAAAAGACCTCGGTCGAAACTCGCCGTTGAGATGGTTGGA 1130
Query 1152 TGTTTCGGAAAACGAATTTTCCGGCGACTTACCGGCGGATCTGTGTGCGAAAGGAGAGCT 1211
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1131 TGTTTCGGAAAACGAATTTGCCGGCGAATTACCGGCGGATCTGTGTGCGAAGGGAGAGCT 1190
Query 1212 AGAGGAGTTGTTGATTATACACAATTCCTTCTCCGGCGTTATACCGGAGAGTCTC-GCCG 1270
|||||||||||||||||||||||| || |||||||||| ||||||||||||| || | ||
Sbjct 1191 AGAGGAGTTGTTGATTATACACAACTCTTTCTCCGGCGCTATACCGGAGAGTTTCAG-CG 1249
Query 1271 ATTGCAGGAGCTTGACACGTATCCGGTTAGCTTATAACCGGTTTTCCGGTTCAGTTCCTA 1330
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1250 ATTGCAGGAGCTTGACACGTATCCGGTTAGCGTATAACCGGTTTTCCGGTTCAGTCCCTA 1309
Query 1331 CAGGTTTCTGGGGATTGCCTCATGTTAACTTGCTTGAGCTCGTCAACAACTCGTTCTCCG 1390
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1310 CCGGTTTCTGGGGATTGCCTCATGTTAACTTGCTTGAGCTTGTCAACAATTCGTTTTCCG 1369
Query 1391 GTGAAATTTCGAAGTCCATTGGAGGTGCTTCAAATCTCTCGCTGTTGATTCTCTCCAACA 1450
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1370 GTGAAATTTCAAAGTCCATTGGAGGTGCATCAAATCTCTCGCTGTTGATTCTCTCCAACA 1429
Query 1451 ATGAATTCACCGGATCTTTGCCGGAGGAAATTGGTTCTTTGGATAATCTTAATCAGTTGT 1510
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1430 ATGAATTCACCGGATCGTTGCCGGAGGAAATTGGTTCGTTGGACAATCTTAATCAGTTGT 1489
Query 1511 CGGCAAGTGGGAACAAGTTCAGTGGCTCGTTGCCTGATAGCTTGATG-AGTCTTGGAGAA 1569
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1490 CGGCAAGTGGAAACAAGTTCAGTGGCTCGTTGCCTGATAGCTTGATGAAG-CTTGGGGAA 1548
Query 1570 TTAGGTACTCTTGATCTTCATGGTAATCAGTTTTCAGGAGAGTTAACTTCTGGAATCAAA 1629
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1549 TTAGGTACTCTTGATCTTCATGGTAATCAGTTTTCAGGGGAATTAACTTCTGGAATCAAA 1608
Query 1630 TCTTGGAAGAAGCTCAACGAGTTAAACTTAGCCGATAACGAATTCACCGGTAAAATTCCA 1689
|||||||| ||||| |||||||||||||||||||||||| |||| | |||| |||||||
Sbjct 1609 TCTTGGAAAAAGCTGAACGAGTTAAACTTAGCCGATAACAAATTTTCGGGTAGAATTCCA 1668
Query 1690 GATGAAATCGGGAGTTTGTCAGTATTGAACTATCTTGATCTT-TCTGGTAACATGTTCTC 1748
||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct 1669 GATGAAATCGGGAGTTTGTCAGTCTTGAACTATCTTGAT-TTGTCTGGTAACATGTTCTC 1727
Query 1749 TGGCAAGATCCCGGTTTCATTGCAGAGTTTGAAGCTAAACCAGCTGAATCTGTCTTATAA 1808
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1728 TGGCAAAATCCCGGTTTCATTGCAGAGTTTGAAGCTAAACCAGCTGAATCTGTCGTATAA 1787
Query 1809 CCGGTTATCGGGTGACTTACCGCCTTCTTTAGCGAAAGATATGTATAAGAATAGCTTCAT 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 CCGGTTATCGGGTGACTTACCGCCTTCTTTAGCGAAAGATATGTATAAGAATAGCTTCAT 1847
Query 1869 TGGGAACCCGGGATTGTGTGGGGATATCAAGGGATTGTGTGGCTCTGAGAATGAAGCTAA 1928
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1848 TGGGAACCCGGGGTTGTGTGGGGATATCAAGGGATTGTGTGGCTCTGAGAGTGAAGCTAA 1907
Query 1929 GAAGAGAGGCTATGTATGGCTTCTTAGATCGATTTTCGTACTTGCTGCGATGGTGCTTCT 1988
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
Sbjct 1908 GAAGAGAGGCTATGTATGGCTTCTTAGGTCGATTTTCGTACTTGCTGCAATGGTGTTTGT 1967
Query 1989 TGCGGGTGTTGCTTGGTTCTACTTCAAGTACAGGACTTTCAAGAAAGCAAGAGCCATGGA 2048
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1968 TGCGGGTGTTGCTTGGTTCTACTTCAAGTACAGGACTTTCAAGAAAGCAAGAGCGATGGA 2027
Query 2049 GAGATCTAAGTGGACTCTAATGTCGTTCCACAAACTCGGGTTCAGTGAGCATGAGATTCT 2108
||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2028 AAGATCCAAATGGATTCTAATGTCGTTCCACAAACTCGGGTTCAGTGAGCACGAGATTCT 2087
Query 2109 TGAAAGCTTGGATGAAGATAATGTGATTGGAGCTGGAGCTTCAGGTAAAGTTTACAAGGT 2168
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 2088 CGAAAGCTTGGATGAAGACAATGTGATTGGAGCTGGAGCTTCGGGTAAAGTGTACAAAGT 2147
Query 2169 TGTACTCACCAATGGGGAAACTGTTGCGGTTAAGCGTTTATGGACAGGTTCTGTTAAGGA 2228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 TGTACTCACCAATGGGGAAACTGTTGCGGTTAAGCGTTTATGGACAGGTTCTGTTAAGGA 2207
Query 2229 AACTGGAGATTGTGATCCAGAGAAAGGTTACAAACCTGGAGTTCAAGATGAGGCTTTTGA 2288
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2208 AACTGGAGATTGTGATCCAGAGAAAGGTTACAAACCTGGAGTCCAGGATGAGGCTTTTGA 2267
Query 2289 AGCTGAAGTTGAGACATTGGGTAAGATTAGGCATAAGAACATTGTGAAGCTATGGTGTTG 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 AGCTGAAGTTGAGACATTGGGTAAGATTAGGCATAAGAACATTGTGAAGCTATGGTGTTG 2327
Query 2349 CTGTTCTACAAGAGACTGCAAGCTCTTGGTTTATGAGTACATGCCTAATGGTAGTTTGGG 2408
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2328 CTGTTCTACAAGAGACTGCAAGCTCTTGGTTTACGAGTACATGCCTAATGGTAGCTTGGG 2387
Query 2409 AGATTTGCTTCATAGCAGTAAAGGAGGAATGTTGGGATGGCAAACGAGGTTTAAGATTAT 2468
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 AGATTTACTTCATAGCAGTAAAGGAGGAATGTTGGGATGGCAAACGAGGTTTAAGATTAT 2447
Query 2469 CTTAGATGCGGCTGAGGGGCTTTCGTATCTTCACCATGATTCTGTTCCTCCGATTGTGCA 2528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 CTTAGATGCGGCTGAGGGGCTTTCGTATCTTCACCATGATTCTGTTCCTCCGATTGTGCA 2507
Query 2529 TAGAGATATTAAGTCAAACAATATTTTGATCGATGGAGATTATGGTGCAAGAGTTGCTGA 2588
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 TAGAGATATTAAGTCGAACAATATTTTGATCGATGGAGATTATGGTGCAAGAGTTGCTGA 2567
Query 2589 TTTTGGTGTGGCTAAAGCTGTCGACTTGACCGGAAAAGCTCCTAAATCGATGTCAGTGAT 2648
|||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 2568 TTTTGGCGTGGCTAAAGCCGTCGACTTGACCGGAAAAGCTCCGAAGTCGATGTCAGTGAT 2627
Query 2649 CGCTGGTTCATGCGGTTATATCGCACCAGAATACGCATATACGCTTCGTGTGAACGAGAA 2708
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2628 TGCTGGTTCATGTGGTTATATCGCACCAGAATACGCATACACGCTTCGTGTGAATGAGAA 2687
Query 2709 AAGCGACATCTACAGTTTCGGGGTAGTGATCCTTGAGATAGTAACTAGGAAACGCCCGGT 2768
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2688 AAGCGACATCTACAGTTTCGGGGTAGTGATCCTCGAGATAGTGACTAGGAAACGCCCGGT 2747
Query 2769 TGATCCAGAACTTGGGGAGAAGGATTTGGTGAAGTGGGTTTGCTCTACATTGGACCAAAA 2828
|||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||
Sbjct 2748 TGATCCAGAACTTGGGGAAAAAGATTTGGTGAAATGGGTTTGCACTACATTGGACCAAAA 2807
Query 2829 AGGCATAGAGCATGTGATAGACCCGAAACTCGACTCTTGTTTCAAAGAAGAGATAAGCAA 2888
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2808 AGGCATAGAGCATGTGATAGACCCGAAACTCGACTCTTGTTTCAAAGATGAGATAAGCAA 2867
Query 2889 AATCCTCAACGTTGGACTCCTCTGCACGAGTCCGTTGCCCATTAACCGACCTTCCATGAG 2948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2868 AATCCTCAACGTTGGACTCCTCTGCACGAGTCCGTTGCCCATTAACCGACCTTCCATGAG 2927
Query 2949 GCGTGTGGTTAAGATGTTGCAAGAAATTGGTGGTGGAGACGAAGATAGCCTACACAAGAT 3008
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 2928 GCGTGTGGTTAAGATGTTGCAAGAAATTGGCGGTGGAGACGAGGAAAGCCTACACAAGAC 2987
Query 3009 AAGAGATGACAAGGATGGCAAGTTAACACCTTATTACAACGAAGACACCTCAGACCAAGG 3068
|||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2988 AAGAGACGATAAGGATGGCAAATTAACACCTTATTACAACGAAGAAACCTCAGACCAAGG 3047
Query 3069 AAGTATAGCTTGAGACACAAATGGAGAAAGAAAAGTGTTT-TGCCCAAAAAAGCTCTCTC 3127
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3048 AAGTGTAGCTTGAGACACAAATGGAGAAAGAAAAGTGTTTGTGCCCAAAAAAGCTCTCTC 3107
Query 3128 AATTTTTGGTGCTTGAAGCTGTCAATTTAGGGCATTGAATCAAGATTCTCTCAC-CCCTT 3186
|||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||
Sbjct 3108 AATTTTTGGTGCTTGAAGCTGTGAATT-AGGGCATTGAATCAAGATTCTCTCCCTCCCTT 3166
Query 3187 TTT-AGGGTTTTGATCTAAAAGTGAGAATCAGAGATTGTCGAA--AT-TTTT-ATAATAT 3241
||| ||||||||| |||||||| |||||||||||||||| ||| || |||| |||||||
Sbjct 3167 TTTTAGGGTTTTGGTCTAAAAGAGAGAATCAGAGATTGTTGAATTATATTTTTATAATAT 3226
Query 3242 AT-ATAAAGAA-GTTTCTAATTCAGCGTTTCAGTTTCTCCACTGTATAAAGCTAT-T-AG 3297
|| | ||| || ||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 3227 ATGAAAAAAAAAGTTTCTAATTCAGTGTTTCAGTTTCTCCACTGTATAAAGCTATATTAG 3286
Query 3298 TAAACTCTGGTTTTGTAAGAGTTTTTATCTTTGGTAAATGCAAATGAAAAA 3348
|||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 3287 TAAACTCTGGTTTTGTAAGAGTTTTTATTTTTAGTAAATGCAAATGAAAAA 3337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126731718090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5