BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28580.1 Length=1502 Score E Sequences producing significant alignments: (Bits) Value Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1 1912 0.0 Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 972 0.0 Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 824 0.0 > Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1 Length=1275 Score = 1912 bits (1035), Expect = 0.0 Identities = 1197/1277 (94%), Gaps = 3/1277 (0%) Strand=Plus/Plus Query 21 AAAAAAGGGATCTCGACGGAGACCAACCTTCAGCTCTCTGGCAATGGCGTATCCCGGTTC 80 |||||| |||||||||||||||||||||| | |||||||||||||||||| ||| | || Sbjct 1 AAAAAA-GGATCTCGACGGAGACCAACCTCCGGCTCTCTGGCAATGGCGTCTCCAGATTA 59 Query 81 GCCTATCTTGATGAAGCTCCTCGTCTTCATCTTTTTATCAACTTTTGTAGTCACTAACGT 140 || ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 60 TACTTTCTTGATGAAGCTCCTCATCTTCATCTTTTTATCAACTTTTATTGTCACTAACGT 119 Query 141 GAGCTCGGAAACTAAGTGCCGGGAGTTCAAATCGATCATCAGTTTCGGAGATTCCATTGC 200 |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 120 CAGCTCGGAAACTAAGTGCCGGGAGTTCAGATCGATCATCAGTTTCGGAGATTCGATTGC 179 Query 201 CGACACTGGAAACTTGCTTGGCCTCTCAGATCCTAAAGATCTTCCTCACATGGCGTTTCC 260 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 CGACACTGGAAACTTGCTTGGCCTCTCAGATCCTAACGATCTTCCTCACATGGCGTTTCC 239 Query 261 ACCGTATGGAGAGAACTTCTTCCACCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCAT 320 |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 ACCGTACGGAGAGACCTTCTTCCACCACCCAACTGGTCGTTTCTCCAATGGCCGCCTCAT 299 Query 321 CATTGATTTCATCGCTGAATTCTTGGGTTTACCGCTTGTGCCTCCATTCTATGGATCTCA 380 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 300 TATTGATTTCATCGCTGAATTCTTGGGTTTACCGCTTGTGCCTCCTTTTTATGGATCTCA 359 Query 381 TAATGCAAACTTTGAAAAGGGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACG 440 |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| Sbjct 360 AAATGCAAACTTTGAGAAGGGAGTTAACTTCGCGGTAGGGGGAGCAACGGCACTGGAACG 419 Query 441 TTCCTTTCTTGAAGACAGAGGAATTCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCA 500 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 420 TTCCTTTCTTGAAGAGAGAGGAATTCATTTTCCTTACACCAATGTCAGTTTAGGCGTTCA 479 Query 501 GCTTAATAGCTTCAAGGAGAGTTTACCTAGCATATGTGGCTCTCCTTCAGACTGTAGAGA 560 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 480 GCTTAATAGCTTCAAGGAGAGTTTGCCTAGCATATGTGGCTCTCCTTCAGACTGCAGAGA 539 Query 561 TATGATAGAAAATGCTTTGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGC 620 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 540 TATGATAGAAAATGCTTTGATTCTCATGGGAGAAATTGGAGGGAATGATTATAATTACGC 599 Query 621 GTTCTTCGTGGACAAAGGCATTGAAGAGATCAAGGAGCTGATGCCCCTGGTGATCACTAC 680 || |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| Sbjct 600 ATTTTTCGTGGACAAAAGCATTGAAGAGATAAAGGAGCTGACGCCCCTGGTGATCACTAC 659 Query 681 TATTTCTTCTGCAATCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGG 740 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 660 TATTTCTTCTGCAATCACGGAGTTGATCAGTATGGGGGGAAGAACATTTCTGGTGCCCGG 719 Query 741 AGAGTTCCCAGTCGGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGA 800 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 720 AGAGTTCCCAGTTGGATGCTCAGTATTCTATTTGACATCACATCAAACATCAAACATGGA 779 Query 801 AGAATACGATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGG 860 |||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| || Sbjct 780 AGAATACGATCCTTTAACCGGATGTTTGAAATGGCTGAATAACTTTGGAGAAAACCACGG 839 Query 861 TGAGCAGCTTAGAGCAGAACTCAACAGACTCCAGAAGTTGTACCCTCATGTTAACATCAT 920 ||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 840 CGAGCAGCTTCGAGCAGAACTCAAGAGACTTCAGAAGTTGTACCCTCATGTCAACATCAT 899 Query 921 ATACGCTGACTACTACAACGCGCTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATT 980 ||| ||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||| Sbjct 900 ATATGCTGACTACTACAACGCTCTGTTGCGCCTTTACCAAGAACCAGCCAAATTCGGATT 959 Query 981 CATGAACAGACCTTTGTCCGCTTGTTGCGGCGCAGGAGGACCGTACAACTATACCGTAGG 1040 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 960 CATGAACAGACCCTTGTCCGCTTGTTGCGGCTCAGGAGGACCGTACAACTATACCGTAGG 1019 Query 1041 TAGGAAATGTGGGACTGATATAGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGGCTTG 1100 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1020 TAGAAAATGTGGGACTGATATAGTTGAAAGTTGTAATGATCCTTCAAAGTATGTGGCTTG 1079 Query 1101 GGACGGTGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTATACTAAATGG 1160 |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1080 GGACGGCGTTCATCTGACTGAGGCTGCCTACAGATTGATGGCTGAGGGTATACTAAAGGG 1139 Query 1161 ACCGTATGCGATTCCTCCTTTTGATTGGTCTTGCCGTAGCTCTGGAGTTAAGAACAGTGG 1220 ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| Sbjct 1140 ACCCTATGCGATTCCTCCTTTTGATTGGTCTTGCCTTAGCTCTGGAATTAAGAAGAGTGG 1199 Query 1221 GTCATCTGACACATAGAATTCTTTGATGAGA-AACTGATACAAGTTGGTCAAAAAATTGA 1279 |||||||||| |||||||||||| ||||| | |||||| | ||||||||||||||||||| Sbjct 1200 GTCATCTGACGCATAGAATTCTTAGATGA-ACAACTGAGATAAGTTGGTCAAAAAATTGA 1258 Query 1280 GAAAAGGATACTGATAA 1296 || |||||||||||||| Sbjct 1259 GACAAGGATACTGATAA 1275 > Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 Length=2427 Score = 972 bits (526), Expect = 0.0 Identities = 940/1133 (83%), Gaps = 56/1133 (5%) Strand=Plus/Plus Query 110 TCTTTTTATCAACTTTTGTAGTCACTAACGTGAGCTCGGAAACTAAGTGCCGGGAGTTCA 169 ||||||| || ||| | | ||||||| ||||||||||||||| ||||||| | |||| Sbjct 30 TCTTTTT-TCTACTCTACTTGTCACTATCGTGAGCTCGGAAACGCCGTGCCGGAATTTCA 88 Query 170 AATCGATCATCAGTTTCGGAGATTCCATTGCCGACACTGGAAACTTGCTTGGCCTCTC-A 228 | ||||||||||||||||| ||||| ||||||||||| || |||||| | || ||||| | Sbjct 89 AGTCGATCATCAGTTTCGGTGATTCGATTGCCGACACCGGGAACTTGGTCGGTCTCTCTA 148 Query 229 GATCCTAA-AGATCTTCC--TCACATGGCGTTTCCACCGTATGGAGAGAAC-TTCTTCCA 284 ||| ||| | ||||||| | || | ||||||||||| || ||||| ||| |||||||| Sbjct 149 -ATCGTAACA-ATCTTCCTGTGAC-T-GCGTTTCCACCATACGGAGA-AACTTTCTTCCA 203 Query 285 CCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCATCATTGA-TTTCATCGCTGAATTCT 343 ||| ||||| || |||| || | |||||||| ||||||| || ||| ||||||||||| | Sbjct 204 CCAACCAACCGGCCGTTCCTGCGACGGCCGCATCATCATGGACTTT-ATCGCTGAATT-T 261 Query 344 -TGGG-TTTACCGCT-TGTGCCTCCATT-CTATGGATCTCATAATGCAAACTTTGAAAAG 399 |||| || || | ||||||||| || || ||||||| | |||| ||||||||| ||| Sbjct 262 GTGGGCCTT-CC-TTATGTGCCTCC-TTACTTTGGATCTAAAAATGGAAACTTTGATAAG 318 Query 400 GGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACGTTCCTTTCT--TGAAGACA 457 || |||||||||||||||| |||||||| || ||||| |||||||||| ||||| | Sbjct 319 GGCGTTAATTTCGCGGTAGCTGGAGCAACGGCACTGGAAAGTTCCTTTCTCATGAAG--A 376 Query 458 GAGGAATTCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCAGCTTAATAGCTTCAAGG 517 |||||||||| ||| |||| || || |||||||| ||||||||||| ||||||||| Sbjct 377 GAGGAATTCA---TCCACACACCAACGTTAGTTTAGGAGTTCAGCTTAAGAGCTTCAAGA 433 Query 518 AGAGTTTACCTAGCATATGTGGCTCTCCTTCAGACTGTAGAGATATGATAGAAAATGCTT 577 | |||||||| | |||||||||||||| ||||| |||||||||||||| | |||||||| Sbjct 434 AAAGTTTACCAAATATATGTGGCTCTCCATCAGATTGTAGAGATATGATTGGAAATGCTT 493 Query 578 TGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGCGTTCTTCG-TGGACAAA 636 ||||||||||||| || |||||||||||||| ||||| | | | ||||||| | |||| Sbjct 494 TGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCGAACG-CAAA 552 Query 637 GGCATTGAA-G-AGATCAAGGAGCTGATGCCCCTGGTGATCACTACTATTTCTTCTGCAA 694 || | || | || | || |||||| | || | |||||| |||||||||||||||||| Sbjct 553 CCCA-TCAAGGAAG-TTAAAGAGCTGGTTCCGTTTGTGATCGCTACTATTTCTTCTGCAA 610 Query 695 TCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGGAGAGTTCCC-AGTC 753 ||||||||||||| ||||||||||||| ||| ||| | ||||||||||||||||| | || Sbjct 611 TCACGGAGTTGATTGGTATGGGGGGAAAAACCTTTCTAGTGCCCGGAGAGTTCCCTA-TC 669 Query 754 GGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGAAGAATACGATCCT 813 |||||||||||| | |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 670 GGATGCTCAGTAGTCTATTTGACATTATATCAAACATCAAACAAGGAAGAATACGATCCT 729 Query 814 TTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGGTGAGCAGCTTA-G 872 ||||||||||||||||||||||||||||||||||| ||| |||| | |||| |||| | Sbjct 730 TTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGCGAATACCACAGCCAGCAACTTAAG 789 Query 873 AGCAGAACTCAACAGACTCCAG-AAGTTGTACCCTCATGTTAACATCATATACGCTGACT 931 | | |||||||||||||| || ||| | |||||||||| ||||||||||||||||||| Sbjct 790 A-CGGAACTCAACAGACTT-AGGAAGCTCAACCCTCATGTCAACATCATATACGCTGACT 847 Query 932 ACTACAACGCGCTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATTCATGAACAGAC 991 |||||||||| || || | ||||| | ||||||||||||||||||| |||||| |||||| Sbjct 848 ACTACAACGCTCTCTTGCGCCTTTTTAAAGAACCAGCCAAATTCGGGTTCATGGACAGAC 907 Query 992 CTTTGTCC-GCTTGTTGCGGCGCAGGAGGACCGTACAACTAT-ACCGT-AGGTAGGAAAT 1048 | ||| | ||||||||||| ||||||||||||||||| | | | | | ||| |||| Sbjct 908 CCTTG-CATGCTTGTTGCGGTATAGGAGGACCGTACAACT-TCAACTTCAC-TAGAAAAT 964 Query 1049 GTGGGACTGATAT-AGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGG-CTTGGGACGG 1106 |||||| || || ||||||| |||| | ||||||||||||||||||| || ||||||| Sbjct 965 GTGGGAGTG-TAGGAGTTGAATCTTGTAAGGATCCTTCAAAGTATGTGGGCT-GGGACGG 1022 Query 1107 TGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTATACT-AAATGGACCGT 1165 |||||||||||||||||||| |||| || ||| ||||| || ||||| ||| ||||||| Sbjct 1023 CGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAAA-GGACCGT 1081 Query 1166 ATGCGATTCCTCCTTTTGATTGGTCTTGCCGT-AGCTCTG-GAGTTAAGAACA 1216 |||||||||||||||||||| |||| |||| | || |||| || ||||||||| Sbjct 1082 ATGCGATTCCTCCTTTTGATCGGTCCTGCC-TCAGATCTGAGA-TTAAGAACA 1132 > Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 Length=1185 Score = 824 bits (446), Expect = 0.0 Identities = 908/1123 (81%), Gaps = 63/1123 (6%) Strand=Plus/Plus Query 110 TCTTTTTATCAACT-TTTGTAGTCACTAAC-GTGAGCTCGGAAACTA-AGTGCCGGGAGT 166 |||||||||| || ||| | ||||||| | || ||||||||| | | |||| | | | | Sbjct 44 TCTTTTTATCTTCTCTTT-TTGTCACTATCGGT-AGCTCGGAATC-ACAGTGTCAGAACT 100 Query 167 TCAAATCGATCATCAGTTTCGGAGATTCCATTGCCGACACTGGAAACTTGCTTGGCCTCT 226 || | |||||||||||||| || ||||| ||||||||||| ||||||||||| | |||| Sbjct 101 TCGAGTCGATCATCAGTTTTGGCGATTCAATTGCCGACACCGGAAACTTGCTCCGTCTCT 160 Query 227 CAGATC-CTAAAGATCTTCCTCACATG-GCG--TTTCCACCGTATGGAGAGAAC-TTCTT 281 | |||| || | |||||||| ||| ||| ||||||||||| |||||| || ||||| Sbjct 161 CGGATCGTTACA-ATCTTCCT---ATGAGCGCATTTCCACCGTACGGAGAG-ACTTTCTT 215 Query 282 CCACCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCATCATTGATTTCATCGCTGAATT 341 |||||| ||||| |||||||||||| ||||||||||||| ||||| |||||||||||||| Sbjct 216 CCACCATCCAACCGGTCGTTTCTCCGACGGCCGCCTCATTATTGACTTCATCGCTGAATT 275 Query 342 CTT-GGGTTTACCGCT-TGTGCCTCCATT-CTAT-GGATCTCAT-AATGCAAACTTTGA- 395 || ||| || || | ||| ||||| || || | |||||| || |||| ||||||||| Sbjct 276 TTTGGGGCTT-CC-TTATGTTCCTCC-TTACT-TCGGATCT-ATAAATGGAAACTTTGAG 330 Query 396 AAAGGGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACGTTCCTTTCTTGAAGA 455 ||| ||||||||||| || |||| |||||| || |||||| | || ||||| ||||| Sbjct 331 AAA-GGAGTTAATTTTGCCGTAGCCTCAGCAACGGCATTGGAAAGCTCATTTCTAGAAGA 389 Query 456 CAGAGGAAT-TCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCAGCTTAATAGCTTCA 514 ||||| || |||| ||| | ||| ||| | |||||||| |||||||||| ||||||| Sbjct 390 GAGAGG-ATACCATTGTCC-T-CAC-AATATTAGTTTAGGAATTCAGCTTAAGAGCTTCA 445 Query 515 AGGAGAGTTTACC-TAGCATATGTGGCTCT-CCTTCAGACTGTAGAGATATGATAGAAAA 572 ||||||||||||| | | ||||||||| | || ||||| |||||||| ||||| | ||| Sbjct 446 AGGAGAGTTTACCAAATC-TATGTGGCT-TACCATCAGATTGTAGAGAAATGATTGGAAA 503 Query 573 TGCTTTGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGCGTTCTTCGTGGA 632 |||||||||||||||||| || ||||||| ||| || ||||| | | | || ||| | | Sbjct 504 TGCTTTGATTCTCATGGGAGAGATTGGAGCGAACGATTATAATTTCCCATTGTTC--GAA 561 Query 633 CAAAG-GCATT-GA-AGAGATCAAGGAGCT-GATGCCCCTGGTGATCACTACTATTTCTT 688 | || | || || | || |||| ||||| | | || ||||||| | ||||||||||| Sbjct 562 CTCAGACCCTTAGACA-AGGTCAAAGAGCTCG-TTCCGTTGGTGATTAGTACTATTTCTT 619 Query 689 CTGCAATCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGGAGAGTTCC 748 | || || ||||| ||||| ||||||||||||||||||||| |||||||||| | ||||| Sbjct 620 CAGCGATTACGGATTTGATTGGTATGGGGGGAAGAACATTTATGGTGCCCGGCGGGTTCC 679 Query 749 CAGTCGGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGAAGAATACG 808 | |||||||||||||| | |||||||| | | ||||||||||||||||||||||| | Sbjct 680 CTCTCGGATGCTCAGTAGCATTTTTGACATTATACCAAACATCAAACATGGAAGAATATG 739 Query 809 ATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGGTGAGCAGC 868 |||||||||||||||||||||||||||| ||||||||||| ||| |||| | ||||||| Sbjct 740 ATCCTTTAACAGGATGTTTGAAATGGCTAAACAAGTTTGGAGAATACCACAGCGAGCAGC 799 Query 869 TT-AGAGCAGAACTCAACAGACTCCAG-AAGTTGTACCCTCATGTTAACATCATATACGC 926 || || ||||||||||| |||||| || || | |||||||||| ||||||||||| || Sbjct 800 TTCAG-GCAGAACTCAAGAGACTC-AGGAAACTCAACCCTCATGTCAACATCATATATGC 857 Query 927 TGACTACTACAACGCG-CTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATTCATGA 985 |||||||||||| || | ||| | |||| ||||||||| |||||| ||||||||| | Sbjct 858 TGACTACTACAATGCTTC-GTTGCGCCTTGGCCAAGAACCAACCAAATACGGATTCATAA 916 Query 986 ACAGAC-CTTTGTCCGCTTGTTGCGGCGCAGGAGGACCGTACAACTAT-ACCGT-AGGTA 1042 |||||| ||| ||| ||||||||||| | ||||||||||||||||| | | | | || || Sbjct 917 ACAGACACTT-GTCAGCTTGTTGCGGTGTAGGAGGACCGTACAACT-TCAACTTCAG-TA 973 Query 1043 GGAAAT-GTGGGACTGATAT-AGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGGCTTG 1100 | || | |||||| || || ||| ||| |||| |||||||||||||||||||||| || Sbjct 974 G-AAGTTGTGGGAGTG-TAGGAGTGGAATCTTGTAATGATCCTTCAAAGTATGTGGCCTG 1031 Query 1101 GGACGGTGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTAT-ACTAAATG 1159 ||| || ||||||||||||||||||| || | || ||||||||| || || ||| || | Sbjct 1032 GGATGGCCTTCATATGACTGAGGCTGCATATAAATCGATGGCTGATGG-ATTACTCAACG 1090 Query 1160 GACCGTATGCGATTCCTCCTTTTGATTGGTCTTGCCGTAGCTC 1202 || | ||||||||||||||||| ||||||| || | |||||| Sbjct 1091 GAACATATGCGATTCCTCCTTTCAATTGGTCATGTCTTAGCTC 1133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56221201620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5