BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29070.1 Length=772 Score E Sequences producing significant alignments: (Bits) Value Ahg473113 jgi|Araly1|473113|fgenesh2_kg.1__3067__AT1G29070.1 1002 0.0 > Ahg473113 jgi|Araly1|473113|fgenesh2_kg.1__3067__AT1G29070.1 Length=692 Score = 1002 bits (542), Expect = 0.0 Identities = 629/669 (94%), Gaps = 13/669 (2%) Strand=Plus/Plus Query 77 AAGAAGTGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTAGCTTCGGCTTCGTCGC 136 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AAGAAGAGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTTGCTTCGGCTTCGTCGC 60 Query 137 GTTTATGGAATCCTGCTGCCTCCAACGGCAAGATTTGCGTTCCTTCTGCTTCGCTTTCTC 196 ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct 61 GTTTATGGAATCCTGCTGCTTCCCACGGCATGATTTGCGTTCCTTCTGCTTCGCTTTCTC 120 Query 197 TGCGTACGGGTTGTAGACGGA-GT---TCGTC--CTCT-CTCACTTCTTCCGCTTCTTCG 249 |||||||||||| ||||| | | ||||| |||| ||||| ||||||||||||||| Sbjct 121 TGCGTACGGGTTCTAGAC-AATCTCCGTCGTCTTCTCTCCTCACCTCTTCCGCTTCTTCG 179 Query 250 CAATTGCTTCATTGCTCGTTTCTCTCGTCGCCTGTTTCCCTAGCGTCTCCATTTTCTGGT 309 |||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| Sbjct 180 CAATTGCTTCATTGCTCGTTTCTCTCCTCACCTCTTTCCCTAGCGTCTCCGTTTTCTGGT 239 Query 310 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAATGGCCAGAGACGCAGA 369 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAACAGCCAGAGACGCAGA 299 Query 370 GGCCTTGTGGTTAGAGCTGGAAAAGCTGCTCTGTGTCAAACTAAGAGAAGCAGATCAAGA 429 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 GGCCTTGTGGTGAGAGCTGGAAAAGCTGCTCTGTGTCAAACAAAGAGAAGCAGATCAAGA 359 Query 430 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGCGGTAGAGCA 489 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 360 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGTGGTAGAGCA 419 Query 490 ACCATAAAGCGTCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 549 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ACCATAAAGCGCCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 479 Query 550 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCACTCTATCTGTAATCTTGTTTCATG 609 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 480 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCAGTCTATCTGTAATCTTGTTTGATA 539 Query 610 TGCtt-ttttt---CCACCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 665 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGCTTATTTTTATTCCGCCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 599 Query 666 GCGTTTTAACTCTCTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATTCATCA 725 | |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 GTGTTT-AACTCTTTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATCCATCA 658 Query 726 CATGTACTA 734 || |||||| Sbjct 659 CAAGTACTA 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28477818999 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5