BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29150.1 Length=1570 Score E Sequences producing significant alignments: (Bits) Value Ahg336019 jgi|Araly1|336019|fgenesh1_pg.C_scaffold_1002584 2023 0.0 > Ahg336019 jgi|Araly1|336019|fgenesh1_pg.C_scaffold_1002584 Length=1866 Score = 2023 bits (1095), Expect = 0.0 Identities = 1189/1236 (96%), Gaps = 0/1236 (0%) Strand=Plus/Plus Query 131 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTACGATACTGTACCAG 190 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 631 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTTCGATACTGTACCAG 690 Query 191 GTTTTGGAAGACCCTTCTTCATCTCCTGAGGCTATACGGATCAAGGAGCAAGCGATTACA 250 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 691 GTTTTGGAAGATCCTTCTTCATCTCCAGAGGCTATACGGATCAAGGAGCAAGCGATTACA 750 Query 251 AACCTTTGTGATCGATTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTGACC 310 || || ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 751 AATCTCTGTGATCGACTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTAACC 810 Query 311 AAGTTGAGGCCTTTCTTTTCCTTAATCCCCAAGGCGAAAACTGCGAAAATCGTCAGAGGA 370 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 811 AAGTTGAGGCCTTTCTTTTCGTTAATCCCCAAGGCGAAAACTGCAAAAATCGTCAGAGGA 870 Query 371 ATCATTGATGCTGTGGCAAAGATTCCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 430 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 871 ATCATTGATGCTGTGGCAAAGATACCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 930 Query 431 GAGATGGTCGAATGGACCCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 490 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 931 GAAATGGTGGAATGGACTCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 990 Query 491 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCGTTGTTGAGT 550 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 991 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCACTGTTGAGT 1050 Query 551 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTCGACATAGACTTG 610 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1051 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTTGACATAGACTTG 1110 Query 611 CTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 670 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 TTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 1170 Query 671 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCAGCTCAACAAGGCACGATAGAT 730 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1171 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCGGCTCAACAAGGCACCATAGAC 1230 Query 731 CTGCAGAGTGGGATTCTTCATGCTGAAGAGAAAGACTACAAAACCGGATACAGTTACTTC 790 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1231 CTGCAGAGTGGGATTCTTCACGCTGAAGAGAAGGACTACAAAACCGGATACAGTTACTTC 1290 Query 791 TTTGAAGCCTTTGAGTCCTTCAACGCTCTCGGAGATCCGAGAGCGGTTTTCAGTTTGAAG 850 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1291 TTTGAAGCCTTTGAGTCCTTCAATGCTCTCGGAGATCCAAGAGCGGTTTTCAGTTTGAAA 1350 Query 851 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1351 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 1410 Query 911 TCAAAGGCTGGACTACAGTACGTTGGCCCTGACCTGGATGCCATGAAAGCAGTCGCTGAT 970 ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| Sbjct 1411 TCAAAGGCTGGACTACAATATGTTGGCCCTGACTTGGATGCCATGAAAGCAGTCGCTGAT 1470 Query 971 GCTCACTCGAAGAGGTCCTTGAAGTTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1030 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1471 GCTCACTCAAAGAGATCCTTGAAACTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1530 Query 1031 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCTTCTCTCTATGACACGCTTCTGGAG 1090 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1531 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCGTCTCTCTATGACACGCTTTTGGAG 1590 Query 1091 CAAAATCTGTGTCGTTTGATCGAGCCCTTCTCAAGAGTTGAGATAGCTCACATTGCTGAG 1150 ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 1591 CAAAACCTGTGTCGTTTGATCGAGCCCTTTTCAAGGGTTGAGATAGCGCACATTGCTGAG 1650 Query 1151 CTCATTGGATTGCCGCTCGACCATGTGGAAAAGAAGCTATCTCAGATGATACTCGACAAG 1210 || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1651 CTGATTGGATTACCGCTCGACCATGTGGAGAAGAAGCTATCTCAGATGATACTGGACAAG 1710 Query 1211 AAATTTGCAGGTACCTTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1270 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1711 AAATTTGCAGGGACATTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1770 Query 1271 GCAGATGCTATCTACTCGGCTACCCTCGAAACCATTGCAAACATGGGGAAGGTCGTCGAC 1330 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1771 GCAGATGCTATCTACTCAGCTACTCTCGACACCATTGCAAACATGGGGAAGGTCGTCGAC 1830 Query 1331 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1366 |||||||||||||||||||||||||||||||||||| Sbjct 1831 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1866 Score = 100 bits (54), Expect = 3e-20 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 13 TCTTCTTATTTCTTCTATACCGTCGTCGAAAAGCTTTACCAAAATCTCACGCCCCCGACG 72 ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 557 TCTTC-TATTTCTTCTCTACCGTCGTCG-AAAGCTTTACCAAAATCTCACGCCCCCGACG 614 Query 73 ATTC 76 |||| Sbjct 615 ATTC 618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58811338280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5