BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29340.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473144 jgi|Araly1|473144|fgenesh2_kg.1__3098__AT1G29340.1 3548 0.0
> Ahg473144 jgi|Araly1|473144|fgenesh2_kg.1__3098__AT1G29340.1
Length=2417
Score = 3548 bits (1921), Expect = 0.0
Identities = 2276/2442 (93%), Gaps = 45/2442 (2%)
Strand=Plus/Plus
Query 3 GAGAAAACCCTTTCCATGGCCTCAGCGGCGATATTCTCATCGTTACGACGGAGGAGATCG 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAACCCCTTCCATGGCCTCAGCGGCGATATTCTCATCGTTACGACGGAGGAGATCG 60
Query 63 CCGTCTTTGGAAGCA-TTCTTAGCCCCCGTTGACCTTTCCGGCGTCGCACTTGTTCAAAC 121
|||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTCTCTGGAAGCATTTC-TAGCCCCCGTTGACCTTTCCGGCGTCGCACTTGTTCAAAC 119
Query 122 CCTAGCTTCAATCTCTTCGGAGGTTGTTTCTTGTTTCACCTCTGTTCGATTCTCGTTTCA 181
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CCTAGCTTCAATCTCAACGGAGGTTGTTTCTTGTTTCACCTCTGTACGATTCTCGTTTCA 179
Query 182 ACGCAAGAACGCTCGTTCTTTGATTCGTAAGATCGAGATCTTTGTCGTATTATTCGAATT 241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 ACGCAAGAACGCTCGTTCTTTGATTCGTAAGATCGAGATCTTTGTCGTATTGTTCGAATT 239
Query 242 TCTCGTAGATTCAAATTGGGGCTCAACAACAACAAGAACAAGAGCAAGAAGAAGAAGCAA 301
||||||||||||||||||||||| | | | | || ||| ||||||||
Sbjct 240 TCTCGTAGATTCAAATTGGGGCT---------C---ATC-A-AG-AAGTAGAAGAAG--- 281
Query 302 AAGCTCTGTTTCTGAATCAACAGCTTTGCTTTGTCTCAAAGAGCTTTATCTTCTTCTCTA 361
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 282 AAGCTCTGTTTCTGAATCAACAGCTTTGCTTTGTCTCAAGGAGCTTTATCTTCTTCTCTA 341
Query 362 TCGTTCCAAGATCCTTGTTGATTACTGCGCTCAATCTAGTAAGTTATGGCTCTTGTTACA 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TCGCTCCAAGATCCTTGTTGATTACTGCGCTCAATCTAGTAAGTTATGGCTCTTGTTACA 401
Query 422 AAACCCTTCGATTTCTGGGTATTTCCATGATTTGAATCAAGAAATTTCGACTCTTTTGGA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AAACCCTTCGATTTCTGGGTATTTCCATGATTTGAATCAAGAAATTTCGACTCTTTTGGA 461
Query 482 TGTTTTACCTGTCAATGATCTTGGTCTAAGCGATGACATTAGAGAGCAAATCGAGTTGTT 541
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 462 TGTTTTACCTGTCAACGATCTTGGTTTAAGCGATGACATTAGAGAGCAAATCGAGTTATT 521
Query 542 GCAGAGACAGTCAAGGAAAGCGAGATTGTATATCGATAAGAACGATGAGTCATTACGTGA 601
||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| ||||||||
Sbjct 522 GCAGAGACAATCAAGAAAATCAAGATTGTATATTGATAAGAACGATGAGTCGTTACGTGA 581
Query 602 ATCATTCTATTCGTTTCTTGATGGGTTTGAGAACGGTAAGATTCCGAGTTCTGTTGATCT 661
||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 582 ATCATTCTATTCGTTTCTTGATGGGTTTGAGAACGGTGAGATTCCGAATTCGGTTGATCT 641
Query 662 GAGAATGTTCTTTGTTGAGAAATTGGGGATTAGAGATTCGAAGAGTTGTCGTAGCGAGAT 721
|||| ||||||||||||||| ||||||||| || ||||||||||||||||| | ||| ||
Sbjct 642 GAGATTGTTCTTTGTTGAGAGATTGGGGATAAGGGATTCGAAGAGTTGTCGAACCGAAAT 701
Query 722 CGAGTTTTTGGAAGAACAGATTGTGAATCATGATGGTGATTTGGAGCCAACGGGATCGGT 781
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 702 CGAGTTTTTGGAAGAACAGATTGTGAATCATGATGGTGATTTGGAGCCTACGGGATCGGT 761
Query 782 TATTAATGGTTTTGTGGCGATTACAAGATACTGTAGGTTCTTGTTGTTTGGATTTGAAGA 841
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 762 TATTAATGGTTTTGTGGCGATTACAAGGTATTGTAGGTTTTTGTTGTTTGGATTTGAAGA 821
Query 842 AGATGGAATGGAGTGGTGGATTGAGAATAATCCGAAGAAGCCTCGAAAAGGGTTCGTTGC 901
||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 822 AGATGGATTGGAGTGGAGGATTGAGAAT---CCGAAGAAACCTCGAAAAGGGTTCGTTGC 878
Query 902 ACAGGAGATTGGAGACACGTTTATAACTGTGCCAAAGGATTTTGTTTGTCCAATCTCTCT 961
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 879 ACAGGAGATTGGGGATACGTTTATAACTGTTCCAAAGGATTTTGTTTGTCCAATCTCTCT 938
Query 962 TGATTTGATGACAGATCCTGTGATTATTTCCACTGGGCAGACTTATGATCGGAACTCTAT 1021
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 939 TGATTTGATGACAGATCCTGTGATTATTTCCACTGGGCAAACTTATGATCGGAGCTCTAT 998
Query 1022 AGCTAGGTGGATTGAAGAAGGGCATTGTACTTGTCCGAAAACAGGACAAATGCTAATGGA 1081
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 999 AGCTAGGTGGATTGAAGAAGGGCATTGTACTTGTCCGAAAACCGGGCAAATGCTTATGGA 1058
Query 1082 TTCGAGGATTGTTCCTAATAGGGCGTTGAAGAATTTGATTGTGCAATGGTGTACTGCGAG 1141
||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct 1059 TTCGAGGATTGTTCCTAATCGAGCTTTGAAGAATTTGATTGTGCAATGGTGTACTGCTAG 1118
Query 1142 TGGTATATCTTATGAGTCAGAGTTTACGGATTCTCCGAATGAGTCTTTTGCTTCTGCTCT 1201
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1119 TGGTATATCTTATGAGTCGGAGTTTACGGATTCTTCGAATGAGTCTTTTGCTTCGGCTCT 1178
Query 1202 TCCCACGAAAGCTGCGGTTGAAGCGAACAAAGCGACGGTGTCGATACTTATTAAGTATCT 1261
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1179 TCCGACGAAAGCTGCCGTTGAAGCGAACAAAGCGACGGTATCGATCCTTATTAAGTATCT 1238
Query 1262 AGCTGATGGTTCTCAAGCAGCTCAGACTGTTGCAGCACGGGAGATTCGTCTTTTAGCTAA 1321
||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1239 AGCAGATGGTTCTGAAGCTGCTCAGACTGTTGCTGCACGGGAGATTCGTCTTTTAGCGAA 1298
Query 1322 GACTGGAAAAGAAAACAGAGCATATATTGCTGAAGCAGGCGCGATACCGCACTTGTGCCG 1381
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1299 AACCGGGAAAGAAAACAGAGCATACATTGCTGAAGCAGGCGCGATACCGCACTTGTGCCG 1358
Query 1382 CCTTCTTACATCCGAAAATGCTATTGCGCAAGAGAATTCAGTGACCGCGATGCTGAATCT 1441
|||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1359 CCTTCTCAAATCCGAAAACGCTATTGCGCAAGAGAATTCAGTGACCGCGATGTTGAATCT 1418
Query 1442 CTCGATATATGAGAAGAACAAGAGTCGGATCATGGAAGAAGGTGATTGTTTGGAGTCTAT 1501
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1419 TTCGATATATGAGAAGAACAAGAGTCGGATTATGGAAGAAGGTGATTGTTTGGAGTCTAT 1478
Query 1502 AGTAAGTGTTCTTGTTTCTGGTCTCACAGTGGAAGCGCAAGAAAATGCAGCGGCTACATT 1561
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1479 AGTAAGTGTTCTTGTTTCTGGTCTCACAGTGGAAGCGCAAGAAAACGCAGCAGCTACATT 1538
Query 1562 GTTCAGTCTCTCTGCAGTACACGAGTATAAGAAACGGATAGC-GATTGTGGATCAGTGCG 1620
||| ||||||||||| ||||||| ||| |||||||||||||| | |||| ||||||||||
Sbjct 1539 GTTTAGTCTCTCTGCTGTACACGTGTACAAGAAACGGATAGCAG-TTGTTGATCAGTGCG 1597
Query 1621 TTGAGGCATTAGCGTTGCTGCTTCAAAACGGGACGCCGAGAGGGAAGAAAGATGCGGTTA 1680
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1598 TTGAGGCATTAGCGTTGCTGCTTCAAAACGGGACACCGAGAGGGAAGAAAGATGCGGTTA 1657
Query 1681 CTGCGTTGTATAACTTATCGACACATCCAGATAACTGCAGTAGGATGATTGAAGGAGGAG 1740
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CAGCGTTATATAACTTATCGACACATCCAGATAACTGCAGTAGGATGATTGAAGGAGGAG 1717
Query 1741 GTGTGTCTAGTCTTGTTGGAGCTTTAAAGAACGAAGGTGTAGCAGAGGAAGCAGCAGGAG 1800
| ||||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||
Sbjct 1718 GAGTGTCAAGTCTTGTTGGCGCTCTCAAGAACGAAGGTGTAGCAGAGGAAGCTGCAGGAG 1777
Query 1801 CTTTGGCTTTGTTAGTTAGACAATCTCTTGGCGCTGAGGCTATAGGGAAAGAAGACTCCG 1860
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 1778 CTTTGGCTTTGTTAGTTAGACAATCACTTGGTGCTGAGGCTATAGGGAAAGAGGACTCTG 1837
Query 1861 CTGTGGCGGGGCTTATGGGAATGATGAGATGTGGAACACCGAGAGGGAAAGAGAATGCTG 1920
||||||| || || ||||||||||||||||| ||||| || |||||||||||||| || |
Sbjct 1838 CTGTGGCAGGACTCATGGGAATGATGAGATGCGGAACGCCAAGAGGGAAAGAGAACGCGG 1897
Query 1921 TTGCTGCGTTGCTCGAGCTTTGTAGGAGTGGTGGAGCTGCTGTGGCGGAGAAAGTGTTGA 1980
| ||||| |||||||| || |||||||| |||||||| |||||||| |||||||||||||
Sbjct 1898 TCGCTGCATTGCTCGAACTCTGTAGGAGCGGTGGAGCCGCTGTGGCAGAGAAAGTGTTGA 1957
Query 1981 GAGCACCTGCGATTGCGGGGTTGCTACAGACGCTTTTGTTTACGGGGACAAAGCGGGCTA 2040
|||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1958 GAGCACCTGCGATTACGGGATTGCTTCAAACGCTTTTGTTTACGGGGACAAAGCGGGCTA 2017
Query 2041 GACGGAAAGCGGCTTCGCTTGCTCGGGTTTTTCAGAGGCGGGAAAATGCAGCGATGCGGT 2100
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2018 GACGGAAAGCGGCTTCGCTTGCTCGGGTTTTCCAGAGGCGGGAGAATGCAGCGATGCGGT 2077
Query 2101 CTGGCGTTTACGGGTTTGTAGGGAATACAAATGGGAATAGAGACGGTGGTTTTACAACGG 2160
|||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||
Sbjct 2078 CTGGCGTTTACGGGTTTGTAGGGAATTCAAACGGCAATAGAGACGGCAGTTTTACAACGG 2137
Query 2161 ATGTCTCAGTTCCGATATCAATCTCAATCTCCGTACCAGTGTTGTGATCTATGTTTAGTC 2220
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2138 ATGTCTCAGTTCCGATATCAATCTCAATCTCCGTACCTGTGTTGTGATCTATGTTTAGTC 2197
Query 2221 T-AAAAGAACTCTAAAAGTGGTACTTTTTTGTTGTTGGTGGTGTTTGTTTCATTGTTT-G 2278
| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2198 TTAAAA-AACTCTAAAAGAGGTACTTTTTTGTTGTTGGTGGTGTTTGTTTCATTGTTTTG 2256
Query 2279 TCTATATTATATACATTTATTGGTTGGGAGGTATAATACAAGTAATATTTTAGAGAAGAT 2338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2257 TCTATATTATATACATTTATTGGTTGGGAGGTATAATACAAGTAATATTTTAGAGAGGAT 2316
Query 2339 ATGTGT----GT-A-TA-T--GTATCTTCCAGGG-A----GA-A-CAAAAAAGAGTTTTG 2382
|||||| || | || | ||||||||||||| | || | |||||| |||||| |
Sbjct 2317 ATGTGTATATGTTAATACTATGTATCTTCCAGGGGAAAAAGAGAGCAAAAATGAGTTTAG 2376
Query 2383 GTGTATGATGATCTTTATGTGTATTGTATTTGATGTATAAGC 2424
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 -TGTATGATGATCTTTATGTGTATTGTATTTGATGTATAAGC 2417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5