BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29370.1 Length=2860 Score E Sequences producing significant alignments: (Bits) Value Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1 4226 0.0 Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201 1273 0.0 > Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1 Length=2838 Score = 4226 bits (2288), Expect = 0.0 Identities = 2689/2871 (94%), Gaps = 73/2871 (3%) Strand=Plus/Plus Query 30 AGAGATATATCTTCCCTTGAGCTTCCTTGGTGTTCTTCGTATT-G--TCGTCGCGACTGA 86 ||||||||||||||||||| |||||||| | ||| || | || | | ||||||||||| Sbjct 1 AGAGATATATCTTCCCTTGTGCTTCCTTCTTCTTCGTCTTCTTCGTATTGTCGCGACTGA 60 Query 87 GAGAAGGCCACAAAAGCTTCGTTTATTTCCTTCAGATCCGATATAGTgagagagagagag 146 ||||| ||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 61 GAGAA-GCCACAAAAGCTTCGTTTATTTCCTTCAGATCC---------A-AGAGATTGAG 109 Query 147 agagagagGCAGCTTACGGCGGATAAATATGAGCAGC-A-G-C-AAG--GT---CGGC-- 195 |||||||||||||||||||| ||| |||||||||||| | | | | || |||| Sbjct 110 AGAGAGAGGCAGCTTACGGCAGATTAATATGAGCAGCAAGGTCGGCGTTGTCGGCGGCGG 169 Query 196 --G-G-CGGAGC----AAGG---A-AA-GGAATTCAGGATATTCCGTCAGGGTCTAGAAA 242 | | |||||| |||| | || |||||||||||||||||||||||||||||||| Sbjct 170 AAGTGCCGGAGCAAGGAAGGCCAATAATGGAATTCAGGATATTCCGTCAGGGTCTAGAAA 229 Query 243 AATAGTACAAAGCTTGACGGAAATTGTAAACTCTCCTGAGGCTGAGATCTATGCTATGCT 302 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 230 AATAGTACAAAGCTTGAAGGAAATTGTAAACTCTCCCGAGGCTGAGATCTATGCTATGCT 289 Query 303 TAAAGAGTGCAATATGGATCCTAACGAAACCGTTAGTCGCCTCCTCTCTCAAGATCCATT 362 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 290 TAAAGAGTGCAATATGGATCCTAACGAAACCGTTAATCGCCTCCTCTCTCAAGATCCGTT 349 Query 363 TCACGAGGTaaagagcaagaaagaaaagaagaaagagaCTAGGGATATATCAGATTCTCG 422 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 350 TCATGAGGTAAAGAGCAAGAAAGAAAAGAAGAAAGAGACTAGGGATATATCGGATTCCCG 409 Query 423 GCCGCGTGGTGCTAATAACACCTACAACCGTGGTGCTAGAGGTGGTTCTGCTCGCTACGC 482 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || || Sbjct 410 GCCGCGTGGTGCTAATAACACGTACAACCGTGGTGCTAGAGGTGGTTCTGATCGTTATGC 469 Query 483 CGGACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAGGGAAAATC 542 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 470 CGGACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAAGGAAAATC 529 Query 543 TACAAATAAGAAAGAAAGTGGAACGCAGGGTTATACAAGTTCTTGGTCTTCTGCTTCTGG 602 | |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 530 TGCAAACAAGAAAGAAAGTGGAACGCAGGATTATTTGAGTTCTTGGTCTTCTGCTTCTGG 589 Query 603 AGTGGCGAACACCTATCAAACACCACACAGTGAACCCGTTGCTACGGAAAACAAATTGCC 662 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 590 AGTGGCGAACACCTATCAAACACCACACAGTGAACCCGTTGCTACGGAAAATAAATTGCC 649 Query 663 TCCTGTTACCTTGGGAGATGGAATATCATCATCACAGTCAGCTTCTGGACATCAAACTGC 722 | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 TTCTGTTCCCTCGGGAGATGGAATATCATCATCACAGTCAGCTTCTGGACATCAAACTGC 709 Query 723 ATGGTTTGGAGCTCCAGGCCAGAGGTCTATGGCTGAAG-TTGTGAAGATGGGTAGACCAC 781 ||||||||||||||||||||| ||||| ||||||| || ||||||||||||||| ||||| Sbjct 710 ATGGTTTGGAGCTCCAGGCCAAAGGTCCATGGCTG-AGATTGTGAAGATGGGTATACCAC 768 Query 782 AGAACAAGACAACAAAGCAAAATGTCAATATGGGTTCTGAGATAAATCATGAACACAAAG 841 ||||||||||||| | |||||||||||||||| || |||||||||||||||| ||| ||| Sbjct 769 AGAACAAGACAACGAGGCAAAATGTCAATATGCGTCCTGAGATAAATCATGAGCACGAAG 828 Query 842 TTAGTGCAAATCATCAGGCCCCTGTTAAAGATGAATGGCCGTCGATTGAGAAGCCGCTGG 901 ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct 829 TTAGTGCAAATCAGCAGGTCCCTGTTAGAGATGAATGGCCGTCGATTGAGAAGCCACTGG 888 Query 902 CTCCTAGTACATCTTCTTTATCAGTAGCACCAGCAGAATCAGAAGTACGCAATGGTCCAG 961 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 889 CTCCTAGTACATCTTCTGTATCAGTAGCACCAGCAGAATCAGAAGTATGCAATGGTCCAG 948 Query 962 CTGATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATA 1021 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 949 CTGATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATACATA 1008 Query 1022 TAGCAGAAAGTGGCCCTTCTGAAAGTCGTAAG-GTTGATCATGTGCAAGCCGACTCTGTT 1080 ||||||||| |||||| |||||||||||| | || |||||||||||||||||||||||| Sbjct 1009 TAGCAGAAAATGGCCCGTCTGAAAGTCGT-GGAGTCGATCATGTGCAAGCCGACTCTGTT 1067 Query 1081 CAAGAAGATGAATCTGTAGTTTCGTCAGAAATTGATGATAATCCATATCAGACACAGAGC 1140 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1068 CAAGAAGATGAATCTGGAGTTTCGTCTGAAATTGATGATAATCCATATCAGACACAGAGC 1127 Query 1141 CATCCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 CATCCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAA 1187 Query 1201 CAACTAGATAGTCATGATCAAGAAGTCTCACATGAAAAGGATAGACCTGCTGTTGTAATT 1260 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1188 CAACTAGATAGTCATGATCAAGAAGTCTCACATGAAGAGGATAGACCTGCTGTTGTAATT 1247 Query 1261 CCAAACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAGTTTTGGAAGCTTTGGA 1320 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1248 CCAAACCATTTGCTAATTCACACAGAAGAATGCTCGCAATTAAGTTTTGGAAGCTTTGGA 1307 Query 1321 GGTTTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTCTGATGTAGCTCCACAA 1380 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1308 GGTTTTGGATCAAGGCCTTTGAGCAACAATGTAGAAGAGACTTCTGATGTAGCTCCACAG 1367 Query 1381 ATCGAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGAACATCTGGGAAGTACA 1440 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1368 ATCGAACATTCAGATGCAAGAAATACTGAGTTTTATGGAGATGAACATCTTGGAAGTACA 1427 Query 1441 ACCAATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAAACG 1500 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1428 ACCAATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAATCT 1487 Query 1501 AGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTT 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 AGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTT 1547 Query 1561 ACCCAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATTCTGCA 1620 |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1548 GCCCAGTCTGAGCAAGGTTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATACTGCA 1607 Query 1621 TATGATGCCTCACACACAAATTCACAGAATCAGATGCATAATCTTGATTCATTATCAAAT 1680 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1608 TATGATGCCTCACACACAAATGCACAGAATCAGATGCATAATCTTGCTTCATTATCAAAT 1667 Query 1681 GTGATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAAT 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1668 GTGATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAAT 1727 Query 1741 GCGAGGGAACTTGACTTCCAGTATTCACCTTTCTCAGCTCAACAGTCTATGCAATCAAGA 1800 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1728 GCGAGGGAACTTGACTTCCAGTTTTTACCTTTCTCAGCTCAACAGTCTATGCAATCAAGA 1787 Query 1801 ACTAGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGA 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1788 ACTAGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGA 1847 Query 1861 GGCAGTGGAATTCCGGCAACACAGCCAACCCAGCAAACACTACCTGGTGCTAATATCGCT 1920 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1848 GGCAGTGGAATTTCGGCAACACAGCCAACCCAGCAAACATTACCTGGTGCTAATATCGCT 1907 Query 1921 ACTGGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTACCTCTA 1980 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1908 ACTGGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTGCCTCTA 1967 Query 1981 ACACACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCA 2040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1968 ACACACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCA 2027 Query 2041 TCTGCTTTCCAGCAAACATTTGCTGGTAATAGTGCATACCACCAGCAACTAGCTGCATTG 2100 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 2028 TCTGCTTTCCAGCAAACATTTGCTGGTAACAACGCATACCACCAGCAACTAGCTGCATTG 2087 Query 2101 CTTCCGCAGTACAAAACCAATGTCTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCT 2160 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2088 CTTCCGCAGTACAAAACCAATGTGTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCT 2147 Query 2161 GCCTCTGCTTATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTT 2220 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2148 ACCTCTGCTTATGGATTTGGAAACTCGACCAATGTTGGATCTGCCGGAAACTTCCCTCTT 2207 Query 2221 AACCAACAGTCTGCTACTACCGGTACAACGCTTGGTTATGACGATGTTCTTAGTTCTCAA 2280 ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2208 AACCAACAGTCTGCTCCTACCGGTACAACGCTTGGTTATGAAGAAGTTCTTAGTTCTCAA 2267 Query 2281 TACAAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAGCAACA--A-CAGCAACATCAA 2337 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||| Sbjct 2268 TACAAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAACAACAGCAACAGCAACAGCAA 2327 Query 2338 CA--A-CAGAACGAAAACTCGGCGATGTGGCATCAGGGTCATGGTTCCAGAACCATGTCA 2394 || | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 2328 CAGCAACAGAACGAAAACTCGGCGATGTGGCATCATGGTCATGGTTCCAGAAACATGTCA 2387 Query 2395 GGTGTCCCGACTAACACGTATTacaacctccaagcacaacaacaactgcaactacaacac 2454 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2388 GGTGTCCCGACTAATACGTATTACAACCTCCAAGCACAACAACAACTACAACTACAACAA 2447 Query 2455 cagcaacaacaacagcaggctcagcaagcagcGGGAGGGTATCGCCAAGCTCAGCAACAA 2514 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2448 CAGCAACAACAACAG--G-CTCAGCAAGCAGCGGGAGGGTATCGCCAAGCTCAGCAACAA 2504 Query 2515 CAGCATTATGGATCTCATGGATACCCAAATTATTATCAGTCTCAGACCGAAATGTCACTC 2574 |||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 2505 CAGCATTACGGATCTCATGGCTACCCAAATTATTATCAGTCTCAAACTGAAATGTCACTG 2564 Query 2575 GAGCGCCAGCAGCAAAACCCTAGGGATGGTG---CTGGGTCTCAGGCTGGTCAACCGTCG 2631 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2565 GAGCGCCAGCAGCAAAACCCTAGGGATGGTGGTACTGGGTCTCAGGCTGGTCAACCGTCG 2624 Query 2632 AATCAATCTCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGG-ttt 2690 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2625 AATCAAACCCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGGGTTT 2684 Query 2691 ttttCAGCTTCTTTCTCTCGCTTATAGAGGTTTGTGTGG-CGAGTCTGAAGAGGAAATAT 2749 |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| | Sbjct 2685 TTTTCAGCTTCTTTCTTTCGGTTATAGAGGTTTGTGTGGGCGAGTCTGAAGAGGAAA-A- 2742 Query 2750 GGTTGTGTTCTAAAATGTAACTTATCATCATCTTTTGTCTCCTCTGTTAACTTAGGGAAC 2809 | |||||||||||||||| |||| | |||||||||||||||||||| Sbjct 2743 -----------A---TGTAACTTATCATCATATTTTCTTTCCTCTGTTAACTTAGGGAA- 2787 Query 2810 ATGCAACTCTGATTTCATCAATGCAACTTCAGAAATGAAACtttttttttt 2860 | ||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 2788 ACGCAACTCTGATTTCATCAATGCAACTTTAGAAATGAAACCTTTTTTTTT 2838 > Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201 Length=2598 Score = 1273 bits (689), Expect = 0.0 Identities = 1737/2222 (78%), Gaps = 156/2222 (7%) Strand=Plus/Plus Query 220 GATATTCCGTCAGGGTCTAGAA-AA-ATAGTACAAAGCTTGACGGAAATTGTAAACT-CT 276 ||||||||||||||||| ||| || || || ||||| |||| ||||||||||||| | Sbjct 67 GATATTCCGTCAGGGTC--GAAGAAGATGGTTCAAAGTTTGAAAGAAATTGTAAACTGC- 123 Query 277 CCTGAGGCTGAGATCTATGCTATGCTTAAAGAGTGCAATATGGATCCTAACGAAACCGTT 336 |||||||| ||||||||||| |||| || || || || ||||||||||| ||| |||| Sbjct 124 CCTGAGGCAGAGATCTATGCCGTGCTCAAGGACTGTAACATGGATCCTAATGAAGCCGTC 183 Query 337 AGTCGCCTCCTCTCTCAAGATCCATTTCACGAGGTaaagagcaagaaagaaaagaagaaa 396 |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 184 AGTCGCCTCCTCTCCCAAGATCCTTTTCACGAGGTGAAGAGCAAAAAAGAAAAGAAGAAA 243 Query 397 gagaCTAGGGATATATCAGATTCTCGGCCG-CGTGGTGCTA-A-TAACACCTACAACCGT 453 |||| |||||||||| | ||||| | |||| || | |||| | ||||| ||||||||| Sbjct 244 GAGATTAGGGATATACCGGATTC-CCGCCGACG-AG-GCTATAGTAACAATTACAACCGT 300 Query 454 GGTG-CTAGAGGTGGTTCTGCTCGCTACGCCGGACGAAGTGGATCTACCCATTTCAGCTC 512 || | |||||||| ||||| ||| || || ||||||| |||| | |||| ||||||||| Sbjct 301 GG-GATTAGAGGTGTTTCTGATCGTTATGCTGGACGAAATGGAGCCACCCCTTTCAGCTC 359 Query 513 TACTGATTCTGGAAACTTCCAGGGAAAATCTACAAATAAGAAAGAAAGTGGAACGCAGGG 572 || ||| || |||| |||||| |||||| ||||||| |||| || || || | |||| Sbjct 360 TAGTGACTCAGGAAGCTTCCAAGGAAAAACTACAAACAAGAGGGAGAGCGGGATGCAGAC 419 Query 573 TTATACAAGTTCTTGGTCTTCTGCTTCTGGAGTGGCGA-ACACCTATCAAACACCACACA 631 | || || |||||| |||||| | ||||| || ||| |||| |||| | |||||||| Sbjct 420 TCATGCAGGTTCTTATTCTTCTACGTCTGGCGTATCGAGCCACC-ATCAGATACCACACA 478 Query 632 GTGAACCCGTTGCTACGGAAAACAAATTGCCTCCTGTTACCTTGGGAGATGGAATATCAT 691 |||| | ||||||| |||| ||| ||| ||||||||| ||| | || |||||||| Sbjct 479 GTGATTCTGTTGCTAAAGAAAGTAAAACGCCAACTGTTACCTCGGGTGGTGAAATATCAT 538 Query 692 CATCACAGTCA-GCTT-CTGGACATCAAACTGCATGGTTTGGAGCTCCAGGCCAGAGGTC 749 |||||| | | | || ||||||||||||||||||||||||||||| |||| ||| ||| Sbjct 539 CATCAC-TTTATG-TTACTGGACATCAAACTGCATGGTTTGGAGCTTCAGGTCAGCTGTC 596 Query 750 TATGGCTGA-AGTTGTGAAGATGGGTAGACCACAGAACAAGACAACAAAG-C--A-AAA- 803 ||||||||| | ||||||||||||||||||| || |||||||||||||| | | ||| Sbjct 597 TATGGCTGACA-TTGTGAAGATGGGTAGACCTCATAACAAGACAACAAACTCTCAGAAAA 655 Query 804 -TGTCAATATGGGTTCTGAGATAAATCATGAACAC-AAAGTTAGTGCAAATCATCAGGCC 861 |||| ||||| |||||||| ||||||| || || ||| | ||||||||| || | Sbjct 656 ATGTCGATATGCGTTCTGAGGTAAATCACGAGCATGAAAATGC-TGCAAATCAACATGTA 714 Query 862 CCTGTTAAAGATGAATGGCCGTCGATTGAGAAGCC-GCTGGCTCCTAGTACATCTTCTTT 920 ||||| |||||||||||||| ||||| |||||||| | ||||| |||| || |||||| | Sbjct 715 CCTGTGAAAGATGAATGGCCCTCGATGGAGAAGCCAG-TGGCTGCTAGCACTTCTTCTGT 773 Query 921 ATCAGTAGCACCAGCAGAATCAGA-AGTACGCAATGGTCCAGCTGATTTCCAATCC-GAT 978 ||||||||||||| | || ||||| | || ||||| ||||||| |||||||||||| | | Sbjct 774 ATCAGTAGCACCAACTGAGTCAGAGA-TATGCAATAGTCCAGCAGATTTCCAATCCAG-T 831 Query 979 AGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATATAGCAGAAAGTGG-CCC 1037 ||| |||||||| ||| ||||| || ||| ||| | | ||| || ||||| ||| ||| Sbjct 832 AGAAGAGATCAACATCCGAAGGGCCAGTTGGAAGACACACATTTAAAAGAAAATGGTCCC 891 Query 1038 TT-------CT-G-AA-AG-TC--GTA-AGGTTGATCA-TGT-GCAAGCCGACTCTGTTC 1081 || || | || || || || || ||| || ||| || | || |||||| Sbjct 892 TTTGGGAATCTTGGAAGAGATCATGTGCAGCCTGA-CACTGTAGCTGGTGGAG-CTGTTC 949 Query 1082 AAGAAGATGAATCTGTAGTTTCGTCAGAA-ATTGATGATAATCCATA----T-C-AGACA 1134 | |||||||| |||| ||| || || || || ||||||||||| || | | | ||| Sbjct 950 AGGAAGATGACTCTGGAGTGTCATCTGAGTAT-GATGATAATCCTTACAGATACCAAACA 1008 Query 1135 CAGAGCCATCCAGTAGAGCACCAC-AAAGATGAAGATGATGTTTCATCTGGTT-CAGCCA 1192 |||| | || || |||| || | ||||||||||| || |||| |||| || | |||| Sbjct 1009 CAGAAAAACCCTGTTGAGCCCC-CGAAAGATGAAGACGAAGTTTTGTCTG-TTGCTGCCA 1066 Query 1193 GTTTTCAACAACT--AG-ATAGT---C-ATGATCAAGAAGTC-TCACATGAAAAGGATAG 1244 ||||| | || || |||| | |||||||| | || || ||||| | ||||| Sbjct 1067 ACCTTCAAGA-CTTGAGCATAGAGAACCATGATCAATAC-TCCTCTCATGATGATGATAG 1124 Query 1245 ACCTGCTGTTGTAATTCCAAACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAG 1304 ||||||||| || |||||| | ||| ||| |||||| |||||||| ||| | || ||||| Sbjct 1125 ACCTGCTGTCGTGATTCCAGATCATCTGCAAATTCATACAGAAGAGTGCTCACAGTTAAG 1184 Query 1305 TTTTGGAAGCTTTGGAGGTTTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTC 1364 |||||||| |||||||| ||||||||||||||||||||||||||| |||||| | |||| Sbjct 1185 CTTTGGAAGTTTTGGAGGCTTTGGATCAAGGCCTTTGAGCAACAGCTTAGAAGAGGCTTC 1244 Query 1365 TGATGTAGCTCCACAAATCGAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGA 1424 ||||||||||||||| || |||| | | ||||| |||||| | ||||||||||||||||| Sbjct 1245 TGATGTAGCTCCACAGATTGAACGTACTGATGCTAGAAATTCGGAGTTCTATGGAGATGA 1304 Query 1425 ACATCTGGGAAGTACAACCAATGGAAATATGGTCCACACACCTGCTACTGGA-AATTATG 1483 |||||| ||||| | ||||||| |||||||||| | || || ||| | ||||||| Sbjct 1305 ACATCTAGGAAGCATGTCCAATGGGCATATGGTCCATGCGTCTACTGCTG-ACAATTATG 1363 Query 1484 ATGATTCTTTAGAA-A-CGAGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCA 1541 ||||||||| |||| | | || |||||||| ||| || ||||||| |||| |||||| Sbjct 1364 ATGATTCTTCAGAATATC-AG-CGAGAGGTTTTGTTGCCAGAAAACCCTGAAACCGCTCA 1421 Query 1542 ---GGAGCACCAGTACACATTTACCCAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAA 1598 |||| |||| ||| | ||| | ||||| || | || ||||| ||||||||| | || Sbjct 1422 TCAGGAGAACCATTACTCGTTTGCTCAGTCGGATCCAGATTATGCATATGAAAATACCAA 1481 Query 1599 GCAGCAGCAG-ATGAATTCTGCATATGATGCCTCACACACAA--ATTCAC-AGAATCAGA 1654 |||||||| | || ||| |||| |||||||||||| |||| || || | || |||| Sbjct 1482 GCAGCAGCTGGAT-AAT---GCATTTGATGCCTCACAGACAAGCATG-ACTA-AA-CAGA 1534 Query 1655 TGCATAATCTTGATTCATTATCAAATGTGATGCAGGGGTATTCACACTCAGTTCCCAACA 1714 |||| |||||| ||||||| ||||||||||||| ||||||||| ||||| |||| |||| Sbjct 1535 TGCAGCATCTTGCTTCATTAACAAATGTGATGCAAGGGTATTCAAACTCAATTCCAAACA 1594 Query 1715 CTTTATTGGCACAAACAGCACAAAATGCGAGGGAACTTGA-CTTCCAGTATTCAC-CTTT 1772 || |||||||||| |||||||| | ||| ||||| ||||| |||| ||||||| | |||| Sbjct 1595 CTCTATTGGCACAGACAGCACAGAGTGCAAGGGAGCTTGAACTTC-AGTATTC-CTCTTT 1652 Query 1773 CTCAG-C-TCAACAGTCTATGCAATCAAGAACTAGCAACAATGCCTCATCACTTGGTGGC 1830 | ||| | | | |||||||||| ||||||| ||||| || || | |||| |||||| Sbjct 1653 CCCAGGCGT-A-CAGTCTATGCCGTCAAGAA---GCAACGATACC--A-CACTAGGTGGC 1704 Query 1831 CAAAGCATTTCAATGCCAGAGGCGCTCCGAGGCAGTGGAATTCCG--GCAACA-C--AGC 1885 ||||||||||| ||||||||||| ||| |||| |||| | | | |||||| | || Sbjct 1705 CAAAGCATTTCCATGCCAGAGGCACTCAGAGGTGGTGG--TGCTGTTGCAACAACCCAGT 1762 Query 1886 CAACCCAGCAAACACT-ACCTGGTGCTAATATCGCTACTGGACCTGCTCTTCCTCAGCAG 1944 ||| |||||| | ||| ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 1763 CAAGCCAGCAGA-ACTTACCCGGTGCCAATATTGCAACTGGACCAGCAATTCCTCAGCAG 1821 Query 1945 CTTCCAATGCAT---TACTCTCAACCCACATTACCTCTAACACACTATGCAAACATGATC 2001 || |||||||| ||||||||||||||||| ||||| || |||||| | ||||||||| Sbjct 1822 ATTGCAATGCATCCATACTCTCAACCCACATTGCCTCTGACTCACTATCCCAACATGATC 1881 Query 2002 GGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCATCTG-CTTTCCAGCAAACATT 2060 |||||||| | |||||||||| || || ||||| ||||| | ||||||||||| |||| Sbjct 1882 AGTTATCCTTTGATGCCTCAGAGCTACCCTTACATTCCATC-GACTTTCCAGCAAGCATT 1940 Query 2061 TGCTGGTAATAG-TGCATACCACCAG-CAACTAGCTGCAT-TGCTTCCGCAGTACAAAAC 2117 ||||||||| | | ||||||||||| || || ||||| | ||||||| || || |||| Sbjct 1941 TGCTGGTAACAACT-CATACCACCAGTCA-CTTGCTGC-TCTGCTTCCACATTATAAAAA 1997 Query 2118 CAATGTCTCTCC-CG-GTAATTTGCCTCAGTCTGCAACAGCGCCTGC--C-TC-T--GCT 2169 ||| || ||| | |||||||||||||||| ||||| | ||||| | || | || Sbjct 1998 CAACA-CT-TCCGCCAGTAATTTGCCTCAGTCAGCAACTTCCCCTGCTTCCTCCTCTGCC 2055 Query 2170 TATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTTAACCAACA- 2228 ||||| |||| ||||||| |||||| | | ||||||||||||| |||||||||||| Sbjct 2056 TATGGGGTTGGGAACTCGAGCAATGTTGAA---GCCGGAAACTTCCTTCTTAACCAACAA 2112 Query 2229 ---GTCTGCTACTACCGGTACAACGCTTGGTTATGACGATGTTCTTAGTTCT-CAATACA 2284 ||| ||| |||| || |||| || ||||||| || | || ||| || ||||||| Sbjct 2113 CATGTC-GCTCCTACTGGGGCAACATTTAGTTATGAAGACGCCCTGAGT-CTACAATACA 2170 Query 2285 AAGAGAAT--C-ATCTGTTGGCA-CTTCAGCAGCAGCAGCAACAACAGCAACATCAACAA 2340 || |||| | |||| ||| | ||||||||||||||||| ||||| || || |||||| Sbjct 2171 AACAGAACAACTATCTATTGT-ATCTTCAGCAGCAGCAGCATCAACAACAGCAGCAACAA 2229 Query 2341 CA 2342 || Sbjct 2230 CA 2231 Score = 99.0 bits (53), Expect = 2e-19 Identities = 96/116 (83%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 2311 CAGCAGCAGCAACAACAGCAACATCAACAACAGAACGAAAACTCGGCGATGTGGCAT-CA 2369 ||||||||||||||||| ||||| ||||||||||| ||||||| | ||||||| | | Sbjct 2269 CAGCAGCAGCAACAACAACAACAACAACAACAGAATGAAAACTTTCCTATGTGGC-TAAA 2327 Query 2370 GGGTCATGGTTC-CAGAACCATGTCAGGTGTCCCGA-CTAACACGTATTacaacct 2423 || | ||| || || ||||||||| |||||||||| | ||||| ||||||||||| Sbjct 2328 TGGACCTGGCTCTCA-AACCATGTCGGGTGTCCCGAGC-AACACATATTACAACCT 2381 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107947754330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5