BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29390.1 Length=823 Score E Sequences producing significant alignments: (Bits) Value Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997 941 0.0 > Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997 Length=1449 Score = 941 bits (509), Expect = 0.0 Identities = 579/613 (94%), Gaps = 4/613 (1%) Strand=Plus/Plus Query 78 AAACCCTTTCTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCAC 137 |||||||||||| |||||||||||||||||||| | || || ||||| ||||||||||| Sbjct 646 AAACCCTTTCTCTCTCTTAAACTCCGGCCTCGTTCGTCCGATCTCTCCCGTCTAGGTCAC 705 Query 138 AGTACTAGTGTTGTTTGCTTCAATCCGT-TAAGGTTATCGGCTGATCGTCAGCGAACCGC 196 ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| || Sbjct 706 TGTACTAGTGCTGTTTGCTTCAATCC-TCTAAGGTTATCGGCTGATCGTCAGCGAATCGG 764 Query 197 TACGGTGTCGGCGAGGGCT-GAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 255 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 765 TACGGTGTCGGCGAGGG-TCGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 823 Query 256 CTACTCCAATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 315 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 CTACTCCGATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 883 Query 316 TGATGTTTGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTAC 375 ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 884 TGATGTTTGCAAGGGGTACTGCTATCCAGAAGTCCTTTGTTGTTCCACTATTTGCACTAC 943 Query 376 AAGCACCAATGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 435 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 AAGCACCATTGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 1003 Query 436 TGGCGCTTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTG 495 ||||||||||||| ||||| |||||| ||||||||| |||||||||||| || ||||||| Sbjct 1004 TGGCGCTTCTTACACGACTATTCTTCGCTTTTCCAGGTGAACTTGAGCTTCCATTCATTG 1063 Query 496 CTTTGCTTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAG 555 | || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1064 CATTACTTTTGGTGATTGTGGCGCCATATCAAGTTATGGGCATAAGAGGGAAACAAGAAG 1123 Query 556 GTGCTATCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 615 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1124 GTGCTATCCTTTCTTTAGCTATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 1183 Query 616 GCACCTTGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTG 675 ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1184 GCAACTTGCAGAGAGCATTTGATCAGAGTTCAGTTCTTGCCACTGTAGCCATAATTGGTG 1243 Query 676 TCACAGTTGTATC 688 ||||||||||||| Sbjct 1244 TCACAGTTGTATC 1256 Score = 737 bits (399), Expect = 0.0 Identities = 578/662 (87%), Gaps = 22/662 (3%) Strand=Plus/Plus Query 27 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 60 Query 87 CTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCACAGTACTAGT 146 || |||| |||||||||||||||||| || ||||||||||||||| || | | || ||| Sbjct 61 GTCTCTCTAAAACTCCGGCCTCGTCCTACAGATATCTCCGGTCTAGATCGCTGCACGAGT 120 Query 147 GTTGTTTGCTTCAATCCGT-TAAGGTTATC-GGCTGATCGTCAGCGAACCGCTACGGTGT 204 ||||||||||||||| | | || ||||| || |||||||||||||||| ||||||||| Sbjct 121 ACTGTTTGCTTCAATCC-TCTTAGATTATCAGG-TGATCGTCAGCGAACCTCTACGGTGT 178 Query 205 CGGCGAGGGCTGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTA-CTCCA 263 ||||||||| ||||||||||| || | | ||||||||| |||||||| | |||| Sbjct 179 CGGCGAGGGTTGAGAAGCGGC----GA-A--A--GAGTGTGGTTTGTTATGC-AGCTCCG 228 Query 264 ATGTTGTCTGTTC-ATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCATTGATGTT 322 | || |||| || ||| |||||||||||||||||| ||||||||| ||||||||||| | Sbjct 229 A--TT-TCTG-TCGATAGTCTACAATGGATCTCGACCATTTCTTGCCTTGCATTGATGCT 284 Query 323 TGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTACAAGCACC 382 |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct 285 TGCAAGGGGTACTGCTATCCATAAGTCCGTTGTTGTTCCACTATTCGCTCTACACGCACC 344 Query 383 AAT-GGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCTTGGCGC 441 || | |||| || | ||||| ||||| || |||||| ||||||||||||||||||||| Sbjct 345 -ATCGAGCATCATCACTTGGATAAAGGGAGAGTATGGCGTCTGGGCAGCATTCTTGGCGC 403 Query 442 TTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTGCTTTGC 501 || || |||||||||||||| ||||||||| |||||||||||||||||||||||| || | Sbjct 404 TTATTGCTCGACTGTTCTTCACTTTTCCAGGTGAACTTGAGCTGCCCTTCATTGCATTAC 463 Query 502 TTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAGGTGCTA 561 | ||||||||||||||||||||||||||||||| |||||||||||| || ||||| || | Sbjct 464 TCTTGGTGATTGTGGCGCCATATCAAGTTATGAACATAAGAGGGAAGCAAGAAGGGGCAA 523 Query 562 TCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAGGCACCT 621 || | || ||||||| |||||||||||||||||||| ||||||||| ||||||| | || Sbjct 524 TCATATCAATAGCAATATCTTGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCT 583 Query 622 TGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 681 || ||||||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 584 TGGAGAAAGCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 643 Query 682 TT 683 || Sbjct 644 TT 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30422087766 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5