BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29450.1 Length=549 Score E Sequences producing significant alignments: (Bits) Value Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 678 0.0 Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 361 4e-99 > Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 Length=508 Score = 678 bits (367), Expect = 0.0 Identities = 435/467 (93%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 1 CTTCACCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAGTTAA-AATCTCCTTCT 59 ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || | Sbjct 1 CTTCATCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAG-TAACAATCTCTTTGT 59 Query 60 GCTTTCGGATCTACAAAATATTTTCCTGAAAAGAATGATGAACACAAAAAAGCTAATCAA 119 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 60 GCTTTCGGATCTACAAAATATTTTCTTGAAAAGAATGATGAACACCAAAAAGCTAATCAA 119 Query 120 GATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GATGGCCAAGAAATGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179 Query 180 ATCAAGTAGTGCTACTAGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGTTTACACGAC 239 |||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 ATCAAGTACTGCTACCAGCTCAACCGCTGCAGAGAAGGGTTGCTTTGTGGTTTACACGAC 239 Query 240 AGACAGCACACGCTTTGCTTTTCCGCTAAGTTACCTGAGTAACTCTGTTTTCCAAGAACT 299 ||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 240 AGATAGCGCACGCTTTGCTTTTCCTCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCT 299 Query 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGT-GGACCTATCACATCGCCA 357 ||||||||||||||||||||||||||||||| ||| | || ||||| || |||| |||| Sbjct 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTCTCCA-C-GGAAGGACCAATAACATTGCCA 357 Query 358 TTCGATTC-AGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAATGGATGCAGA 416 |||||||| | ||||| |||||||||| ||||||||| || ||||||||||||||| ||| Sbjct 358 TTCGATTCGA-TTTTCATGGAGTATCTTATCAAATTGATCGAAAGACGAATGGATGGAGA 416 Query 417 CACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTT 463 ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 417 CACAGAAAAGGCTTTATTAATGTCAATCTCTAGTGCTAGATGTTCTT 463 > Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 Length=573 Score = 361 bits (195), Expect = 4e-99 Identities = 325/385 (84%), Gaps = 20/385 (5%) Strand=Plus/Plus Query 118 AAGATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCA-CA-GGAAAAGGATCTCATTTC 175 |||||||||||||| |||||||||||||||| ||| || || ||||||| |||||| ||| Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAG-CCTTCAGCATGGAAAAGAATCTCACTTC 235 Query 176 A-AAGATCAAGTAG-TGCTACT---AGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGT 230 | | | |||||| | | ||||| ||||||||| ||| ||||||| ||||||| ||||| Sbjct 236 AGACG-TCAAGT-GCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGT 293 Query 231 TTACACGACAGACAGCA-CACGCTTTGCTTTT-CCGCTAAGTTACCTGAGTAACTCTGTT 288 ||||||| |||| | | |||| |||| |||| || ||| |||||||| ||||||||| Sbjct 294 TTACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT 351 Query 289 TTCCAAGAACTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGTGGACCTAT 347 |||||||| |||||||||| ||||||||||||||||||||| ||| | | |||| | || Sbjct 352 TTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAAT 410 Query 348 CACATCGCCATTCGATTCAGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAAT 407 ||||| | |||||||||| ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 411 CACATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAAT 470 Query 408 GGATGCAGACACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTTC-CC 466 ||| | ||| |||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 471 GGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCTAAACC 530 Query 467 A-ATGCTCTTTGAAACTACAAGAAC 490 | || || ||| || | |||||||| Sbjct 531 ATATTCT-TTTCAA-CAACAAGAAC 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20031684225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5