BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29660.1 Length=1353 Score E Sequences producing significant alignments: (Bits) Value Ahg473169 jgi|Araly1|473169|fgenesh2_kg.1__3123__AT1G29660.1 2111 0.0 > Ahg473169 jgi|Araly1|473169|fgenesh2_kg.1__3123__AT1G29660.1 Length=1340 Score = 2111 bits (1143), Expect = 0.0 Identities = 1284/1350 (95%), Gaps = 17/1350 (1%) Strand=Plus/Plus Query 11 CACAACGACCACCACTCCTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 70 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACAACTACCACCACTACTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 60 Query 71 CATAAAATTCAGTTCCTAAGTATTTTTGTTT-TGTTTTGTGAGATCGATGGAGAGTTACT 129 ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| Sbjct 61 CATAAAATTCAGTTCCTAAGTATTTTT-TTTATG-GTTGTGAGATCGATGGAGAGTTACT 118 Query 130 TGAGGAAATGGTGTTTAGTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTAA 189 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 119 TGAGGAAATGGTGTTTACTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTCA 178 Query 190 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 238 Query 250 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 298 Query 310 GCGGCCCCACCGGCCGTTTTTCCAACGGCAGAACCACCGTCGACGTTCTCACTGAGCTAC 369 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 299 GCGGCCCCACCGGCCGTTTTTCCAACGGAAAAACCACCGTCGACGTTCTCACTGAGCTAC 358 Query 370 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCAAG-AGATACTTCAA 428 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 359 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCA-GCAGATACTTCAA 417 Query 429 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 477 Query 489 CAAAGGATAACATTTAGTGGGCAAGTAGAGAATTATAAGAACACAGTGGCA-CAAGTGGT 547 ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct 478 GAAAGGATAACATTTAATGGGCAAGTAGAGAATTATAAGAACACAGTGGCAGCA-GTGGT 536 Query 548 GGAGA-TTCTTGGAGACGAGTACACTGCAGCAGATTACCTTAAGAGATGCATTTACTCTG 606 ||| | |||||||||||||| ||||||||||||||||||| | ||||||||||||||||| Sbjct 537 GGA-ACTTCTTGGAGACGAGAACACTGCAGCAGATTACCTGAGGAGATGCATTTACTCTG 595 Query 607 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACTCCACTA 666 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 596 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACCCCACTA 655 Query 667 GCAGACAGTACACTCCCGAACAGTATGCTGACGATCTTATCAGTCGTTACAGGGACCAGC 726 |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| Sbjct 656 GCAGACAGTACACTCCTGAACAGTATGCTGACGATCTTGTCAGTCGTTACAGGGAGCAGC 715 Query 727 TTAATGCACTGTACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 786 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TTAATGCACTATACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 775 Query 787 GATGTAGTCCGAATGCGCTCGCACAGGGCAGCCAAGACGGAACAACTTGTGTGGAGCGTA 846 ||||||| |||||||||||||||||||| |||| || |||||||||||||||||||||| Sbjct 776 GATGTAGCCCGAATGCGCTCGCACAGGGAAGCCCCGATGGAACAACTTGTGTGGAGCGTA 835 Query 847 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTAAACA 906 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 836 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTCAATA 895 Query 907 ACGCTCATTCCGATGCTA-GTTTCACTTACATCAATGCTTATGGCGCTTTTCAGGATATA 965 || ||||||||||| | ||| |||||| |||||||||||||||||||| ||||| ||| Sbjct 896 GCGAACATTCCGATGCCAAGTT-CACTTATATCAATGCTTATGGCGCTTTCCAGGACATA 954 Query 966 ATCGCCAATCCCTCTGCTTATGGGTTTACGAATACGAACACTGCGTGTTGCGGAATTGGA 1025 |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 955 ATCGCCAATCCCTCTGCTTATGGGTTTACGGTTACGAACACAGCGTGTTGCGGAATTGGA 1014 Query 1026 AGGAACGGAGGTCAGCTAACATGTTTACCGGGAGAACCCCCGTGCTTGAACCGAGATGAG 1085 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1015 AGGAACGGAGGTCAGCTAACATGTTTACCGGGACAACCCCCGTGCCTGAACCGAGATGAG 1074 Query 1086 TACGTGTTTTGGGATGCATTTCATCCTTCGGCTGCTGCAAACACGGCCATTGCAAAAAGA 1145 ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||| Sbjct 1075 TACGTGTTTTGGGATGCATTTCATCCTTCAGCTGCCGCAAACACGGTCATTGCACAAAGA 1134 Query 1146 TCTTACAATGCACAAAGATCTTCCGACGTTTATCCGATTGATATCTCGCAATTAGCACAG 1205 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1135 TCTTACAATGCACAAAGATCTTCCGACGTTAATCCGATTGATATCTCGCAATTGGCACAG 1194 Query 1206 CTTTGAAAGGACAGAGAATAGGAGAGTTTT-ACAACAATTGTATGCTTTTCAGGTTATAA 1264 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| Sbjct 1195 CTTTGAAAGGACAGAGAATAGGAGAGTTTTTA-AACAATTGTATGCTTTTCAGGTTCTAA 1253 Query 1265 ATTGAATTATTGGAAATGATT-CTGATGTTATGTGTGTACCCAAAGTGTTCAACTTTATa 1323 |||||||| |||||||| ||| |||| ||||| |||||||||||| ||||| |||||||| Sbjct 1254 ATTGAATTCTTGGAAAT-ATTTCTGAAGTTATATGTGTACCCAAATTGTTCTACTTTATA 1312 Query 1324 aaaaaaaaTAGGGATTGCATTATCTGAGTT 1353 |||||||| ||| |||||||| |||||||| Sbjct 1313 AAAAAAAA-AGG-ATTGCATTCTCTGAGTT 1340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50627233776 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5