BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29890.2
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473199 jgi|Araly1|473199|fgenesh2_kg.1__3153__AT1G29890.2 2916 0.0
Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2 1105 0.0
> Ahg473199 jgi|Araly1|473199|fgenesh2_kg.1__3153__AT1G29890.2
Length=1833
Score = 2916 bits (1579), Expect = 0.0
Identities = 1751/1834 (95%), Gaps = 12/1834 (1%)
Strand=Plus/Plus
Query 66 GAAACTAATTGCAATTGGAGTGTAT-ATTGCAGTATCTAGTTTTTGAATCTCTGGGTATT 124
||| ||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||
Sbjct 1 GAATCTAATTGCAATTGGAGTGTGTAATTGCAGTATCTAGTATTTGAAGCTCTGGGTATT 60
Query 125 CCTTTATGGATCCAGTAGATATGGTTGTGTCACAGCCAATTACGCCTGGTCAGGTTTCGT 184
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 61 CCTTTATGGATCCAGTAGATATGGTGGTTTCACAGCCAATTACGCCTGGTCAGGTTTCGT 120
Query 185 TTCTGCTTGGAGTCATTCCTCTTATGATAGCATGGCTATACTCGGAATTTCTGGAGTATA 244
||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 121 TTCTGCTTGGAGTTATCCCTCTTATGATAGCATGGCTATACTCGGAATTTCTTGAATATA 180
Query 245 GGAGGTCTTCTTTTCACGCTAAAGTTCATTCAGATAAGAATTTGGTTGAACTGGAAATGG 304
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGAGGTCTTCTTTACACCCTAAAGTTCATTCAGATAAGAATTTGGTTGAACTTGAAATGG 240
Query 305 TGACGAACAAAGAGGATGAAGGAACAGTTTTAATGGAAGGAGGTCTTCCAAGATCTGCCT 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 241 TGACGAACAAAGAGGATGAAGGAACAGTTTTAATGGAAGGAGGGCTTCCAAGATCTGTCT 300
Query 365 CTTCAAAGTTTTATAGCTCACCAATCAAAACAAATTTGATTAGGTTTCTGACTTTGGAAG 424
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 301 CTTCAAAGTTTTATAGCTCATCAATCAAAACAAACTTGCTTAGGTTTCTGACTTTGGAAG 360
Query 425 ACTCTTTCTTGCTTGAAAACCGAGCAACCTTGAGAGCAATGGCTGAGTTTGGAGCAATTC 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTCTTTCTTGCTTGAAAATCGAGCAACCTTGAGAGCAATGGCTGAGTTTGGAGCAATTC 420
Query 485 TTTTATATTTTTATATTTGTGATCGAACTAGCTTGATCGGGCAGTCTCAAAAGAATTACA 544
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 TTTTATATTTTTATATTTGTGATCGAACTAGCTTGCTCGGGCAGTCTAAAAAGAATTACA 480
Query 545 GCCGAGACCTTTTTCTCTTTCTCTTCTGTCTTCTCATCATAGTGTCAGCTATGACGTCCT 604
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 ACCGAGACCTTTTCCTCTTTCTCTACTGTCTTCTCATCATAGTGTCAGCTATGACGTCCT 540
Query 605 TGAAGAAACACACTGACAAGTCACCAATAACAGGAAAGTCCATTCTGTATCTCAATCGTC 664
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 TGAAGAAACACACTGACAAGTCACCAATAACGGGAAAGTCCATTCTGTATCTCAATCGTC 600
Query 665 ACCAGACTGAAGAATGGAAAGGGTGGATGCAGGTTCTATTTCTGATGTATCATTATTTTG 724
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ACCAGACTGAAGAATGGAAGGGGTGGATGCAGGTTCTATTTCTAATGTATCATTATTTTG 660
Query 725 CGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCG 784
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 CTGCGGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTTTGGATGACCG 720
Query 785 GTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTC 844
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTTTGGAAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTC 780
Query 845 AGGTCAGATCAACTATTTT-C--GATCACCATAGTTTGTTCAGTTTACCATGTGATGTTC 901
||||||||| |||| |||| | ||||||||| |||||||||||||||||||||| | |
Sbjct 781 AGGTCAGATTAACTGTTTTACTACATCACCATACTTTGTTCAGTTTACCATGTGATATGC 840
Query 902 TTTTAGAGAGCACTATGTCTTTCAAAGCTCAAGATTTTTATGAAAGCTTTTACTTAATCC 961
||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 841 TTTTAGAAAGCATTATGTCTTTCAAAGCTCAAGAATTTCATGAAAGCTTTTACTTTATCC 900
Query 962 AGATGATGTGGCGGCTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGACT 1021
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGATGATGTGGCGACTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGACT 960
Query 1022 ATATGCTGTACTACATCTGTCCAATGCACACTCTATTCACGCTGATGGTCTATGGAGCCC 1081
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 961 ATATGCTGTACTACATTTGTCCAATGCACACTCTATTCACTCTGATGGTCTATGGAGCAC 1020
Query 1082 TTGGTATTTACAGTCAGTATAACGAAATAGCATCAGTGATGGCTCTGAAGATTGCTTCAT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGGTATTTACAGTCAGTATAACGAAATAGCATCAGTGATGGCTCTGAAGATTGCTTCAT 1080
Query 1142 GCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCTGGAGTTTTTGAGATTTTCTGGAGTC 1201
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1081 GCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCAGGAGTTTTTGAGATCTTCTGGAGTC 1140
Query 1202 CTCTGGCATTCTTACTGGGGTACACAGATCCAGCTAAACCAGACCTTCCACGTCTACACG 1261
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1141 CTCTGGCATTCTTACTGGGGTATACAGATCCAGCTAAACCAGACCTTCCACGTCTACATG 1200
Query 1262 AATGGCATTTCAGATCTGGACTTGATCGCTACATATGGATCATCGGCATGATATATGCAT 1321
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 AATGGCATTTCAGATCCGGGCTTGATCGCTACATATGGATCATTGGCATGATATATGCAT 1260
Query 1322 ATTTTCATCCCACTGTA------GAAAGATGGATGGAGAAATTGGAGGAGTGTGATGCTA 1375
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTTTCACCCCACTGTAATTCTAGAAAGATGGATGGAGAAATTGGAGGAGTGTGATGCTA 1320
Query 1376 AGAGAAGGATGTCAATCAAGACAAGCATAATAGGAATTTCTTCATTCGCTGGTTACCTTT 1435
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAAGAAGGATGTCAATCAAGACTAGCATAATAGGAATTTCTTCATTCGCTGGTTACCTTT 1380
Query 1436 GGTATGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACAT 1495
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1381 GGTATGAATACATCTACAAGCTAGACAAGGTTACATACAACAAATATCATCCCTACACAT 1440
Query 1496 CTTGGATTCCAATAACTGTCTACATCTGTCTGCGAAATTGCACCCAACAGCTACGGAGAT 1555
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1441 CTTGGATTCCAATAACTGTCTACATCTGTCTGCGAAATTGCACACAACAGCTACGGAGTT 1500
Query 1556 TTTCCCTGACACTCTTTGCGTGGCTGGGCAAGATAACTCTCGAGACCTACATTTCACAGT 1615
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1501 TTTCCCTAACACTCTTTGCGTGGCTCGGCAAAATAACTCTCGAGACCTACATTTCACAGT 1560
Query 1616 TTCACATCTGGTTAAGATCGAGTGTGCCAAATGGGCAGCCAAAGTTGCTATTATCAATCA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TTCACATCTGGTTAAGATCGAGTGTGCCAAATGGGCAGCCAAAGTTGCTATTATCAATCA 1620
Query 1676 TCCCAGAATACCCAATGCTCAACTTCATGCTCACCACGGCCATCTACGTCTTGGTATCTG 1735
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1621 TCCCGGAATACCCAATGCTCAACTTCATGCTCACCACGGCCATCTATGTCTTGGTATCTG 1680
Query 1736 TTCGACTTTTCGAGCTAACCAATACATTAAAATCAGTTTTCATACCCACGAAAGACGACA 1795
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1681 TTCGACTTTTCGAGCTTACCAATACACTAAAATCAGTTTTCATACCCACGAAAGACGACA 1740
Query 1796 AACGGCTGCTCCACAACGTGATTGCTATGGCTGCGATATCATTTTGTTTATATATT-ATC 1854
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| || ||
Sbjct 1741 AACGGCTACTCCACAACGTCATTGCTATGGCTGCGATATCATTGTGTTTATAT-TTGATT 1799
Query 1855 GGTCTTATTCTTCTCTTGATCCCACATTAACTTT 1888
||||||||||||||||||||||||||||||||||
Sbjct 1800 GGTCTTATTCTTCTCTTGATCCCACATTAACTTT 1833
> Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2
Length=2321
Score = 1105 bits (598), Expect = 0.0
Identities = 822/931 (88%), Gaps = 12/931 (1%)
Strand=Plus/Plus
Query 961 CAGATGATGTGGCGGCTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGAC 1020
|||||||||||||| |||||||| |||||||||||| | |||||||||||||| |||||
Sbjct 963 CAGATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAGCTGCATTATTCTCAATAATGAT 1022
Query 1021 TATATGCTGTACTACATCTGTCCAATGCACACTCTATTCACGCTGATGGTCTATGGAGCC 1080
|||||| | |||||||||||||||||||||||||| ||||| || ||||| |||||||||
Sbjct 1023 TATATGTTATACTACATCTGTCCAATGCACACTCTGTTCACTCTCATGGTGTATGGAGCC 1082
Query 1081 CTTGGTAT-TTACAGTCAGTATAACGAAATAGCATCAGTGATGGCTCTGAAGATTGCTTC 1139
|||||||| || ||||| ||| ||||||||| ||||||| |||||| |||||||||||||
Sbjct 1083 CTTGGTATCTT-CAGTCGGTACAACGAAATACCATCAGTAATGGCTTTGAAGATTGCTTC 1141
Query 1140 ATGCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCTGGAGTTTTTGAGATTTTCTGGAG 1199
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 ATGCTTTCTCGTGGTTATCGTGATGTGGGAGATCCCTGGAGTTTTTGAGATTTTCTGGAG 1201
Query 1200 TCCTCTGGCATTCTTACTGGGGTACACAGATCCAGCTAAACCAGACCTTCCACGTCTACA 1259
|||||| ||||||||||||| ||||| ||||| ||||||||||| || |||| | ||||
Sbjct 1202 TCCTCTAACATTCTTACTGGGATACACTGATCCGGCTAAACCAGATCTACCACTTTTACA 1261
Query 1260 CGAATGGCATTTCAGATCTGGACTTGATCGCTACATATGGATCATCGGCATGATATATGC 1319
|||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 1262 TGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGC 1321
Query 1320 ATATTTTCATCCCACTGTAGAAAGATGGATGGAGAAATTGGAGGAGTGTGATGCTAAGAG 1379
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1322 CTATTTCCATCCCACTGTAGAGAGATGGATGGAGAAATTGGAGGAGTGTGATGCCAAGAG 1381
Query 1380 AAGGATGTCAATCAAGACAAGCATAATAGGAATTTCTTCATTCGCTGGTTACCTTTGGTA 1439
|| ||||||||| |||||||||||||| | | |||| ||||| | ||||||||| |||||
Sbjct 1382 AAAGATGTCAATAAAGACAAGCATAATTGCACTTTCCTCATTTGTTGGTTACCTATGGTA 1441
Query 1440 TGAATACATCTACAAGCTGGACAAGGTTACGTACAACAAATATCATCCCTACACATCTTG 1499
||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1442 TGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCACCCCTACACATCGTG 1501
Query 1500 GATTCCAATAACTGTCTACATCTGTCTGCGAAATTGCACCCAACAGCTACGGAGATTT-T 1558
|||||||||||| |||||||||||||||||||||| ||| |||||||| |||| |||| |
Sbjct 1502 GATTCCAATAACCGTCTACATCTGTCTGCGAAATTCCACACAACAGCTGCGGA-ATTTCT 1560
Query 1559 CCCTGACACTCTTTGCGTGGCTGGGCAAGATAACTCTCGAGACCTACATTTCACAGTTTC 1618
|||||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||||||
Sbjct 1561 CCCTGACACTCTTTGCGTGGCTCGGCAAGATTACTCTGGAAACCTATATTTCTCAGTTTC 1620
Query 1619 ACATCTGGTTAAGATCGAGTGTGCCAAATGGGCAGCCAAAGTTGCTATTAT-CAATCATC 1677
|||||||||||||||||| |||||||||||| ||||| |||| |||||||| || | ||
Sbjct 1621 ACATCTGGTTAAGATCGAATGTGCCAAATGGACAGCCTAAGTGGCTATTATGCATT-ATT 1679
Query 1678 CCAGAATACCCAATGCTCAACTTCATGCTCACCACGGCCATCTACGTCTTGGTATCTGTT 1737
|||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| |
Sbjct 1680 CCAGAATACCCAATGCTCAACTTCATGCTCGTCACGGCCATCTATGTCTTGGTGTCTCAT 1739
Query 1738 CGACTTTTCGAGCTAACCAATACATTAAAATCAGTTTTCATACCCACGAAAGACGACAA- 1796
|||||||||||||| || ||||| ||||| || ||||||||||| || |||||||||||
Sbjct 1740 CGACTTTTCGAGCTTACAAATACGTTAAAGTCTGTTTTCATACCAACAAAAGACGACAAG 1799
Query 1797 ACGGCTGCTCCACAACGTGATTGCTATG-GCTGCGATATCATTTTGTTTATATATTATCG 1855
| | ||||||||||| || ||||| | ||||| || || || ||||||||| ||| |
Sbjct 1800 A-GACTGCTCCACAATGTTCTTGCTG-GAGCTGCCATCTCGTTCTGTTTATAT-TTAACA 1856
Query 1856 G-TCTTATTCTTCTCTTGATCCCACATTAAC 1885
| ||| ||||||||| ||||||||| ||||
Sbjct 1857 GCTCTCATTCTTCTCCAGATCCCACACTAAC 1887
Score = 750 bits (406), Expect = 0.0
Identities = 620/723 (86%), Gaps = 15/723 (2%)
Strand=Plus/Plus
Query 131 TGGATCCAGTAGATATGGTTG-TGTCACAGCCAATTACGCCTGGTCAGGTTTCGTTTCTG 189
|||||||| || | |||| | | || |||||||| |||||||||||||||||||||||
Sbjct 251 TGGATCCAATATA-ATGGCGGAT-TCTCAGCCAATCACGCCTGGTCAGGTTTCGTTTCTA 308
Query 190 CTTGGAGTCATTCCTCT-TATGATAGCATGGCTATACTCGGAATTTCTGGAGTATAGGAG 248
|| |||||||||||| | | | ||||||||| ||||||| || ||||| ||||||| |||
Sbjct 309 CTCGGAGTCATTCCTGTCT-TCATAGCATGGATATACTCAGAGTTTCTAGAGTATAAGAG 367
Query 249 GTCTTCTTTTCACGCTAAAGTTCATTCAGATAAGAATTTGGTTGAACT-GG-AAATGGTG 306
|||||| || ||| ||||||| ||||||||||| |||||||| ||| | || || |||
Sbjct 368 GTCTTCATTGCACTCTAAAGTCCATTCAGATAATAATTTGGTGGAATTGGGTGAA--GTG 425
Query 307 ACGAACAAAGAGGATGAAGGAACAGTTTTAATGGAAGGAGGTCTTCCAAGATCTGCCTCT 366
| ||||| || ||||||||| |||||||| | |||||||||||| ||||||||| |||
Sbjct 426 AAAAACAAGGAAGATGAAGGAGCAGTTTTACTTGAAGGAGGTCTTGCAAGATCTGTATCT 485
Query 367 TCAAAGTTTTATAGCTCACCAATCAAAACAAATTTGATTAGGTTTCTGACTTTGGAAGAC 426
|||||||||||| |||||| ||||||||||| ||||||||||||||||| | ||||||
Sbjct 486 ACAAAGTTTTATAACTCACCTATCAAAACAAACTTGATTAGGTTTCTGACGCTCGAAGAC 545
Query 427 TCTTTCTTGCTTGAAAACCGAGCAACCTTGAGAGCAATGGCTGAGTTTGGAGCAATTCTT 486
||||||||| ||||| | ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 546 TCTTTCTTGATTGAACATCGAGCAACCTTGAGAGCGATGGCTGAGTTTGGGGCGATTCTT 605
Query 487 TTATATTTTTATATTTGTGATCGAACTAGCTTGATCGG-GCAGTCTCAAAAGAATTACAG 545
|| || ||||||||| | |||||||| |||||| | || | ||||| ||||||||||||
Sbjct 606 TTTTACTTTTATATTAGCGATCGAACAAGCTTGCTTGGAG-AGTCTAAAAAGAATTACAA 664
Query 546 CCGAGACCTTTTTCTCTTTCTCTTCTGTCTTCTCATCATAGTGTCA-GCTATGACGTCCT 604
| |||| ||||| |||||||||| ||||||||||||||||||| || | ||||| ||||
Sbjct 665 CAGAGATCTTTTCCTCTTTCTCTACTGTCTTCTCATCATAGTGGCATAC-ATGACATCCT 723
Query 605 TGAAGAAACACACTGACAAGTCACCAATAACAGGAAAGTCCATTCTGTATCTCAATCGTC 664
|||||||||||| |||||| ||||| || |||||||| |||||||| ||||| |||||||
Sbjct 724 TGAAGAAACACAATGACAAATCACCTATTACAGGAAAATCCATTCTCTATCTTAATCGTC 783
Query 665 ACCAGACTGAAGAATGGAAAGGG-TGGATGCAGGTTCTATTTCTGATGTATCATTATTTT 723
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 784 ACCAGACTGAAGAGTGG-AAGGGATGGATGCAGGTTCTATTTCTGATGTATCATTACTTT 842
Query 724 GCGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACC 783
|| || | |||| | || |||||||||||||| ||||| |||| ||| || ||||||||
Sbjct 843 GCTGCGGCTGAGATATATAATGCAATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACT 902
Query 784 GGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACT 843
|| |||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||
Sbjct 903 GGGTTTGGGAACTTCTCGTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACT 962
Query 844 CAG 846
|||
Sbjct 963 CAG 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71419209375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5