BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29920.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 1604 0.0 Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 1271 0.0 Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 985 0.0 Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 933 0.0 > Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 Length=1008 Score = 1604 bits (868), Expect = 0.0 Identities = 965/1012 (95%), Gaps = 5/1012 (0%) Strand=Plus/Plus Query 16 ACTCTCACTCACAAGTTAGTCATaaaaaaaaaaaaaacacaaaaaaGTTTCAATGGCCGC 75 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1 ACTCTCACTCACAAGTTAGTCACCAAAAAAAAAAAAACACAAAAAATTTTCAATGGCCGC 60 Query 76 CTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACCTTTCCCCTGC 135 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 61 CTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGC 120 Query 136 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 180 Query 196 GGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTC 255 |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 181 GGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTC 240 Query 256 TGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACACAGC 315 ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 241 TGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGC 300 Query 316 TGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 375 || || || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 360 Query 376 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAACGG 435 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGG 420 Query 436 AGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGG 495 ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 421 AGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGG 480 Query 496 GCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGGGC 555 ||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 481 GCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGC 540 Query 556 CACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCCATT 615 ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 CACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATT 600 Query 616 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGCTAC 675 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 601 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTAC 660 Query 676 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTAT 735 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 661 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTAT 720 Query 736 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAGAA 795 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 721 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAA 780 Query 796 CCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAACTT 855 ||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||| Sbjct 781 CCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTT 840 Query 856 TGTTCCCGGAAAGTGAGCCAAGTTCTATCTGTTTGTAATTTACTTTTCTTTCAATCTTTT 915 |||||||||||||||||||||||| |||| ||||||||||| ||||| || ||||||||| Sbjct 841 TGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTTTT 898 Query 916 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGTAGGTTTGTGTTTGTGGTGGATGGTA-GA 974 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 899 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTTGA 958 Query 975 GACTTTCAGATGTAAATTTGCAAAGACTTTGTATGATTTGTCATTAATCAAA 1026 |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 GACTTTCA-ATGTAAATTTGCAA-GACTTTGTATGATTTGTCATTAATCAAA 1008 > Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 Length=1002 Score = 1271 bits (688), Expect = 0.0 Identities = 779/824 (95%), Gaps = 1/824 (0%) Strand=Plus/Plus Query 65 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAAC 124 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || Sbjct 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120 Query 125 CTTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 184 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180 Query 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244 |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240 Query 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304 || ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300 Query 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364 |||||||| || || || || || |||||||||||||||||||||||||||||||||||| Sbjct 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360 Query 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420 Query 425 GCCAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTC 484 |||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||| Sbjct 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480 Query 485 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 544 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540 Query 545 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGA 604 || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600 Query 605 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTG 664 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660 Query 665 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGA 724 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 720 Query 725 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 784 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 721 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 780 Query 785 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTT 844 |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct 781 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 840 Query 845 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTCT-ATCTGT 887 ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 841 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGT 884 > Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 Length=798 Score = 985 bits (533), Expect = 0.0 Identities = 672/741 (91%), Gaps = 2/741 (0%) Strand=Plus/Plus Query 134 GCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 193 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60 Query 194 AAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTC 253 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120 Query 254 TCTGGCGAGTCACCC-AGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACAC 312 || |||||| | ||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 121 TCCGGCGAGCC-CCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACAC 179 Query 313 AGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCA 372 || ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 180 CGCCGGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCA 239 Query 373 CAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAA 432 |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 240 CAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAA 299 Query 433 CGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGG 492 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| || Sbjct 300 CGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGG 359 Query 493 AGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTG 552 ||| | || |||||||| ||||| |||||||| |||||||||||||| || |||||||| Sbjct 360 AGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTG 419 Query 553 GGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCC 612 ||| || ||||| || | |||||||| |||||||| ||||||||||| |||||||| || Sbjct 420 GGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCC 479 Query 613 ATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGC 672 |||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | || Sbjct 480 ATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGC 539 Query 673 TACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGC 732 ||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct 540 TACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGC 599 Query 733 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGA 792 |||||||||||||||||||||||||||||||||||||||||| || |||||||| | || Sbjct 600 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGA 659 Query 793 GAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAA 852 |||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 660 GAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAA 719 Query 853 CTTTGTTCCCGGAAAGTGAGC 873 ||| || |||||||||| ||| Sbjct 720 CTTCGTCCCCGGAAAGTAAGC 740 > Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 Length=987 Score = 933 bits (505), Expect = 0.0 Identities = 711/811 (88%), Gaps = 11/811 (1%) Strand=Plus/Plus Query 66 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACC 125 ||||||||||||| ||||||||||||||||| |||||| | ||||||||||| || || | Sbjct 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGC 103 Query 126 TTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGTT 184 | ||||| ||||| || ||||| |||||| |||||| || || ||| | ||| | | Sbjct 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--CT 160 Query 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244 |||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161 -CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 219 Query 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304 ||||||||||| || ||| | || |||||||| || ||||| ||||| || |||||||| Sbjct 220 GGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGG 279 Query 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364 |||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 280 TGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAA 339 Query 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 340 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTG 399 Query 425 GC-CAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 483 || | | || |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 400 GCTC-GCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458 Query 484 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTT 543 |||||||||||| | || |||||||| || || |||||||| |||||||||||||| || Sbjct 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518 Query 544 GGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGG 603 |||||||||||||| ||||| || | |||||||| |||||||| ||||||||||| || Sbjct 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578 Query 604 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAG-TTTCGACCCAT 662 |||||| |||||||||||||| ||||||||||||||||| |||||||| ||| ||||||| Sbjct 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTT-GACCCAT 637 Query 663 TGGGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAAC 721 |||| ||| |||| ||||| ||||| || || ||||||||||| ||||||||||||||| Sbjct 638 TGGGCCTTG-CTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAGGAGCTCAAGAAC 696 Query 722 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 781 ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 697 GGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAG 756 Query 782 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCC 841 |||||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 757 GGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCC 816 Query 842 TTTGCCACCAACTTTGTTCCCGGAAAGTGAG 872 || || |||||||| || ||||||||||||| Sbjct 817 TTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5