BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29930.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 1629 0.0
Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 1371 0.0
Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 1007 0.0
Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 933 0.0
> Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1
Length=1002
Score = 1629 bits (882), Expect = 0.0
Identities = 965/1005 (96%), Gaps = 5/1005 (0%)
Strand=Plus/Plus
Query 1 ACCCATTTCTTGGCTTACAACAACAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCA 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1 ACCCATTTCTTGGCTTACAACAACAACTCTTAAACGTTTTACTTTGTGCT--AC-ACTCA 57
Query 61 ACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 58 ACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTC 117
Query 121 AAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACT 180
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 118 AAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACA 177
Query 181 GTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 237
Query 241 TTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 300
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 297
Query 301 GGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTA 360
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 298 GGATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTA 357
Query 361 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTT 417
Query 421 TTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATC 480
||||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 418 TTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATC 477
Query 481 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATT 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATC 537
Query 541 TTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 600
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 TTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 597
Query 601 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCA 657
Query 661 TTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 TTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 717
Query 721 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAG 777
Query 781 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCC 840
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCC 837
Query 841 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT-ATCTGTATTTTGCTTCAGT 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGTATTTTGCTTCAGT 897
Query 900 CTTTGCTTCGTGAGTGTGAGAGGAGAAAGAGAGCTTGTTTAGATGTAAAATTTGCAAGAC 959
|||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 898 CTTTGCTTCGTGTGAGTGAGAGGAGAAAGAGAGGTTGTATAGATGTAAAATTTGCAAGAC 957
Query 960 TTTGTAtt-tttttCATTAATCAAATAACTCGTTTTTCTCTCAAA 1003
||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTGTGTAATTTTTCATTAATCAAATAACTCGTTTTTCTCTCAAA 1002
> Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1
Length=1008
Score = 1371 bits (742), Expect = 0.0
Identities = 794/820 (97%), Gaps = 0/820 (0%)
Strand=Plus/Plus
Query 64 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAG 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 50 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAC 109
Query 124 CTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 169
Query 184 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 229
Query 244 GGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 303
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 289
Query 304 TGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAA 363
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 290 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 349
Query 364 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 350 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 409
Query 424 GCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTC 483
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 410 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTC 469
Query 484 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 543
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 470 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTG 529
Query 544 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 603
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 530 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 589
Query 604 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTG 663
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 590 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 649
Query 664 GGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 723
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 709
Query 724 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 783
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 710 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 769
Query 784 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTC 843
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 770 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 829
Query 844 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 883
||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 869
> Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1
Length=798
Score = 1007 bits (545), Expect = 0.0
Identities = 675/740 (91%), Gaps = 0/740 (0%)
Strand=Plus/Plus
Query 133 GCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 192
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60
Query 193 AAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 252
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120
Query 253 TCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACC 312
|| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACC 180
Query 313 GCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAAGTTATCCAC 372
||||| || || |||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 181 GCCGGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCAC 240
Query 373 AGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGAAAC 432
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 241 AGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAAC 300
Query 433 GGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGA 492
||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 301 GGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGGA 360
Query 493 GGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGG 552
|| | || |||||||| ||||| |||||||| |||||||||||||| || |||||||||
Sbjct 361 GGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGG 420
Query 553 GCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCA 612
|| || ||||| || | |||||||| |||||||||||||||||||| |||||||| |||
Sbjct 421 GCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCA 480
Query 613 TTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTTTGGCT 672
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 481 TTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCT 540
Query 673 ACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 732
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 541 ACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGCT 600
Query 733 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAG 792
||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 601 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAG 660
Query 793 AACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTCGCCACCAAC 852
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAAC 720
Query 853 TTTGTTCCCGGAAAGTGAGC 872
|| || |||||||||| |||
Sbjct 721 TTCGTCCCCGGAAAGTAAGC 740
> Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1
Length=987
Score = 933 bits (505), Expect = 0.0
Identities = 719/823 (87%), Gaps = 11/823 (1%)
Strand=Plus/Plus
Query 52 CACTACTCAACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCT-TCGCCGG 110
|||| ||| ||| ||||||||||||| ||||||||||||||||| |||| || | |||||
Sbjct 33 CACT-CTC-ACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGG 89
Query 111 TAAGGCCGTCAAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAAT 170
|||||||| ||||| ||||| ||||| || ||||| |||||| |||||| || || ||
Sbjct 90 AAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCAT 149
Query 171 GAG-GAAGACTGTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACC 229
| | ||| | | |||| || | || |||||||||||||||||||||||||| ||||
Sbjct 150 GCGCAAAG-C--CT-CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACC 205
Query 230 GTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCC 289
| ||||||||||||||||||||||| || || | ||||||||||| || ||||| ||||
Sbjct 206 GAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCC 265
Query 290 CCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGA 349
|||| |||||||| |||||||| ||||| || || || ||||||||||| ||||| ||||
Sbjct 266 CCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGA 325
Query 350 ACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCT 409
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 326 ACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTT 385
Query 410 TCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCG 469
|||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||| |
Sbjct 386 TCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTG 445
Query 470 GTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACG 529
||||||||||||||||||||||||| | || |||||||| || || |||||||| ||||
Sbjct 446 GTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACG 505
Query 530 CTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCT 589
|||||||||| || |||||||||||||| ||||| || | |||||||| ||||||||||
Sbjct 506 CTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCT 565
Query 590 ACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCA 649
|||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 566 ACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCA 625
Query 650 GCTTCGACCCATTGGG-TTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAG 708
|||| ||||||||||| || ||||| ||||| ||||| || || |||||||||||||||
Sbjct 626 GCTTTGACCCATTGGGCCTT-GCTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAG 684
Query 709 GAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATC 768
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 685 GAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATT 744
Query 769 GTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAAC 828
||||| || ||||||||| | ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 745 GTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAAC 804
Query 829 AACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 871
||||||||||||||||| |||||||| || |||||||||||||
Sbjct 805 AACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5