BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30135.1

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912827 jgi|Araly1|912827|Al_scaffold_0001_3081                    566    7e-161


> Ahg912827 jgi|Araly1|912827|Al_scaffold_0001_3081
Length=396

 Score =  566 bits (306),  Expect = 7e-161
 Identities = 355/378 (94%), Gaps = 6/378 (2%)
 Strand=Plus/Plus

Query  34   CAGCAAAA-TTGTGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTCTGATTCTTC  92
            ||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  4    CAG-AAAACTTGCGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTGTGATTCTTC  62

Query  93   AGATACAACCTCTGTTGTAGAATCAACCAGTTCTGGAAATCCACAACCAAATGAAGAATC  152
            ||||||||||||||| | ||||||||| ||||||||||||  ||||||||| ||||||||
Sbjct  63   AGATACAACCTCTGTCGCAGAATCAACTAGTTCTGGAAATTTACAACCAAAGGAAGAATC  122

Query  153  TCAAAGAATAACAATTTTCTACAATGGAAAAATGTGTTTTTCTTCAGATGTTACCCATCT  212
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  123  TCAAAGAATAACAATTTTCTACAACGGAAAAATGTGTTTTTCTTCAGATGTTACACATCT  182

Query  213  TCAGGCAAGATCGATAATATCGATCGC-AAGCAGAGAAAT-GAAAACCAAGTCATCCTCA  270
            |||||||| |||||||||||||||||| || ||||||||| |||||  ||||||||||||
Sbjct  183  TCAGGCAAAATCGATAATATCGATCGCGAA-CAGAGAAATGGAAAA-GAAGTCATCCTCA  240

Query  271  AACGGGTCGGATCCTCCAAACAAGTCGACCTCATTTCATCATAATCAGCTTCCAAATCCA  330
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  241  AACGGGTCGGATCCTCCAAACAAGTCGACCCCATTTCATCATAATCAGCTTCCAAATCCA  300

Query  331  AAAGCATCAATGAAAAAATCTCTCCAAAGTTTTCTTCAGAAACGGAAAATTCGAATTCAA  390
            || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct  301  AAGGCATCAATGAAAAAATCTCTCCAAAGCTTTCTTCAGAAACGGAAAAGTCGAATTCAA  360

Query  391  GCTACTTCACCGTACCAT  408
            ||||||||||| ||||||
Sbjct  361  GCTACTTCACCTTACCAT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20604018060


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5