BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30135.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value Ahg912827 jgi|Araly1|912827|Al_scaffold_0001_3081 566 7e-161 > Ahg912827 jgi|Araly1|912827|Al_scaffold_0001_3081 Length=396 Score = 566 bits (306), Expect = 7e-161 Identities = 355/378 (94%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 34 CAGCAAAA-TTGTGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTCTGATTCTTC 92 ||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4 CAG-AAAACTTGCGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTGTGATTCTTC 62 Query 93 AGATACAACCTCTGTTGTAGAATCAACCAGTTCTGGAAATCCACAACCAAATGAAGAATC 152 ||||||||||||||| | ||||||||| |||||||||||| ||||||||| |||||||| Sbjct 63 AGATACAACCTCTGTCGCAGAATCAACTAGTTCTGGAAATTTACAACCAAAGGAAGAATC 122 Query 153 TCAAAGAATAACAATTTTCTACAATGGAAAAATGTGTTTTTCTTCAGATGTTACCCATCT 212 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 123 TCAAAGAATAACAATTTTCTACAACGGAAAAATGTGTTTTTCTTCAGATGTTACACATCT 182 Query 213 TCAGGCAAGATCGATAATATCGATCGC-AAGCAGAGAAAT-GAAAACCAAGTCATCCTCA 270 |||||||| |||||||||||||||||| || ||||||||| ||||| |||||||||||| Sbjct 183 TCAGGCAAAATCGATAATATCGATCGCGAA-CAGAGAAATGGAAAA-GAAGTCATCCTCA 240 Query 271 AACGGGTCGGATCCTCCAAACAAGTCGACCTCATTTCATCATAATCAGCTTCCAAATCCA 330 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 AACGGGTCGGATCCTCCAAACAAGTCGACCCCATTTCATCATAATCAGCTTCCAAATCCA 300 Query 331 AAAGCATCAATGAAAAAATCTCTCCAAAGTTTTCTTCAGAAACGGAAAATTCGAATTCAA 390 || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 301 AAGGCATCAATGAAAAAATCTCTCCAAAGCTTTCTTCAGAAACGGAAAAGTCGAATTCAA 360 Query 391 GCTACTTCACCGTACCAT 408 ||||||||||| |||||| Sbjct 361 GCTACTTCACCTTACCAT 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20604018060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5