BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30190.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922071 jgi|Araly1|922071|scaffold_103352.1 1016 0.0
Ahg952413 jgi|Araly1|952413|scaffold_70000001.1 1011 0.0
> Ahg922071 jgi|Araly1|922071|scaffold_103352.1
Length=869
Score = 1016 bits (550), Expect = 0.0
Identities = 759/853 (89%), Gaps = 41/853 (5%)
Strand=Plus/Plus
Query 1 ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTC--G-------AGCCAAAG 51
|||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 22 ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTCGAGCCTTACAAGCCAAAG 81
Query 52 AAACGACGTTATTACTCTTCTTCGATGCTTACCATCTTCTTACCGATCTTCACATACATT 111
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 82 AAACGACGTTATTACACTTCTTCGATGCTTACCATCTTCTTATCGATCTTCACATACATT 141
Query 112 ATGATCTTTCACGTTTTCGAAGTATCACTATCTTCGGTCTTTAAAGACACAAAGGTCTTG 171
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 142 ATGATCTTTTACGTTTTCGAAGTATCACCATCTTCGGTCTTCAAAGACACAAAGGTCTTG 201
Query 172 TTCTTCATCTCCAATACTCTCATCCTCATAATAGCCGCCGATTATGGTTCCTTCTCTGAT 231
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 202 TTCTTCATCTCCAATACTCTCATCCTCATAATCGCCGCCGATTATGGTGCCTTCTCTGAT 261
Query 232 AAAGAGAGTCAAGACTTTTACGGTGAATACACTGTCG-CAGCGGCAACGATGCGAAACCG 290
||||||||||| ||||||||| ||||||||| | || || | ||||||||| ||| |||
Sbjct 262 AAAGAGAGTCACGACTTTTACAGTGAATACAAAGCCGCCA-CCGCAACGATGAGAAGCCG 320
Query 291 AGCTGATAACTACTCTCCGATTCCCG--TCTTGACATACCGAGAAAACAC-TAAAGATGG 347
|||||| |||||||||||||||||| || |||| | |||||||| | || |||||
Sbjct 321 TGCTGATTACTACTCTCCGATTCCCGTTTCAAGACAGA--GAGAAAAC-CTTAGAGATGC 377
Query 348 AGAAATCAAGAACCCTAAAGATGTCGAATTCAGGAACCCTGAAGAAGAAGACGAACCGAT 407
| |||||||||||||| || | | | | ||| ||||||| || | ||||||
Sbjct 378 AAAAATCAAGAACCCT-AA-A----G-A---A-GAA----GAAGAAG--GA-GTACCGAT 419
Query 408 GGTGAAAGATATCATTTGCGTTTCTCCTCCCGAGAAAATAGT-ACGAGTGGTGAGTGAGA 466
||||||||| ||| ||| ||||| |||||||||||||||||| || |||||||| |||
Sbjct 420 GGTGAAAGAGATCGTTTACGTTTATCCTCCCGAGAAAATAGTGAC-AGTGGTGAACGAGG 478
Query 467 AGAAACAGAGAGATGATGTAGCTATGGAAGAA-TACAAACCA-GTTACAGAACAAACTCT 524
|||||| |||||| | | ||||||| | |||| | |||| || |||||||| |||||| |
Sbjct 479 AGAAACCGAGAGACGTTTTAGCTATCG-AGAATTTCAAA-CAGGTTACAGATCAAACTGT 536
Query 525 TGCTAGCGAAGAAGCTTGCAACACAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 584
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 537 TGCTAGCGAAGAAGCTTGTGACGCAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 596
Query 585 AAGTAAATCAGATAAGCCACGGAGAAAGAGGCTCAGCGTAGATACAGAGACGACCAAACG 644
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 597 AAGTAGATCAGATAAGCCACGGAGAAAGAGGCTCAGCGAAGGTACAGAGACGACCAAACG 656
Query 645 TAAAAGTTATGGTCGAAAGAAATCAGATTGCTCGAGATGGATGGTTATTCCGGAGAAGTG 704
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 657 TAAAAGTTATGGTCGAAGGAAATCAGATTGCTCGACAAGGATGGTTATTCCGGAGAAGTG 716
Query 705 GGAATATGTTAAAGAAGAATCTGAAGAGTTTTCAAAGTTGTCCAACGAGGAGTTGAACAA 764
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 717 GGAAAATGTTAAAGAAGAATCTGAAGAGTTTTCAAAATTGTCCAACGAGGAGTTAAACAA 776
Query 765 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCACCGCGAGT 824
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 777 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCATCACGAGT 836
Query 825 TTCGTCTACTTGA 837
|||||||||||||
Sbjct 837 TTCGTCTACTTGA 849
> Ahg952413 jgi|Araly1|952413|scaffold_70000001.1
Length=870
Score = 1011 bits (547), Expect = 0.0
Identities = 758/853 (89%), Gaps = 41/853 (5%)
Strand=Plus/Plus
Query 1 ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTC--G-------AGCCAAAG 51
||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 23 ATGACAGAAATGCCCTCATACATGATCGAGAACCCAAAGTTCGAGCCTTACAAGCCAAAG 82
Query 52 AAACGACGTTATTACTCTTCTTCGATGCTTACCATCTTCTTACCGATCTTCACATACATT 111
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 83 AAACGACGTTATTACACTTCTTCGATGCTTACCATCTTCTTATCGATCTTCACATACATT 142
Query 112 ATGATCTTTCACGTTTTCGAAGTATCACTATCTTCGGTCTTTAAAGACACAAAGGTCTTG 171
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 143 ATGATCTTTTACGTTTTCGAAGTATCACCATCTTCGGTCTTCAAAGACACAAAGGTCTTG 202
Query 172 TTCTTCATCTCCAATACTCTCATCCTCATAATAGCCGCCGATTATGGTTCCTTCTCTGAT 231
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 203 TTCTTCATCTCCAATACTCTCATCCTCATAATCGCCGCCGATTATGGTGCCTTCTCTGAT 262
Query 232 AAAGAGAGTCAAGACTTTTACGGTGAATACACTGTCG-CAGCGGCAACGATGCGAAACCG 290
||||||||||| ||||||||| ||||||||| | || || | ||||||||| ||| |||
Sbjct 263 AAAGAGAGTCACGACTTTTACAGTGAATACAAAGCCGCCA-CCGCAACGATGAGAAGCCG 321
Query 291 AGCTGATAACTACTCTCCGATTCCCG--TCTTGACATACCGAGAAAACAC-TAAAGATGG 347
|||||| |||||||||||||||||| || |||| | |||||||| | || |||||
Sbjct 322 TGCTGATTACTACTCTCCGATTCCCGTTTCAAGACAGA--GAGAAAAC-CTTAGAGATGC 378
Query 348 AGAAATCAAGAACCCTAAAGATGTCGAATTCAGGAACCCTGAAGAAGAAGACGAACCGAT 407
| |||||||||||||| || | | | | ||| ||||||| || | ||||||
Sbjct 379 AAAAATCAAGAACCCT-AA-A----G-A---A-GAA----GAAGAAG--GA-GTACCGAT 420
Query 408 GGTGAAAGATATCATTTGCGTTTCTCCTCCCGAGAAAATAGT-ACGAGTGGTGAGTGAGA 466
||||||||| ||| ||| ||||| |||||||||||||||||| || |||||||| |||
Sbjct 421 GGTGAAAGAGATCGTTTACGTTTATCCTCCCGAGAAAATAGTGAC-AGTGGTGAACGAGG 479
Query 467 AGAAACAGAGAGATGATGTAGCTATGGAAGAA-TACAAACCA-GTTACAGAACAAACTCT 524
|||||| |||||| | | ||||||| | |||| | |||| || |||||||| |||||| |
Sbjct 480 AGAAACCGAGAGACGTTTTAGCTATCG-AGAATTTCAAA-CAGGTTACAGATCAAACTGT 537
Query 525 TGCTAGCGAAGAAGCTTGCAACACAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 584
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCTAGCGAAGAAGCTTGTGACGCAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 597
Query 585 AAGTAAATCAGATAAGCCACGGAGAAAGAGGCTCAGCGTAGATACAGAGACGACCAAACG 644
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 598 AAGTAGATCAGATAAGCCACGGAGAAAGAGGCTCAGCGAAGGTACAGAGACGACCAAACG 657
Query 645 TAAAAGTTATGGTCGAAAGAAATCAGATTGCTCGAGATGGATGGTTATTCCGGAGAAGTG 704
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 658 TAAAAGTTATGGTCGAAGGAAATCAGATTGCTCGACAAGGATGGTTATTCCGGAGAAGTG 717
Query 705 GGAATATGTTAAAGAAGAATCTGAAGAGTTTTCAAAGTTGTCCAACGAGGAGTTGAACAA 764
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 718 GGAAAATGTTAAAGAAGAATCTGAAGAGTTTTCAAAATTGTCCAACGAGGAGTTAAACAA 777
Query 765 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCACCGCGAGT 824
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 778 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCATCACGAGT 837
Query 825 TTCGTCTACTTGA 837
|||||||||||||
Sbjct 838 TTCGTCTACTTGA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5