BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30220.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473243 jgi|Araly1|473243|fgenesh2_kg.1__3197__AT1G30220.1 2883 0.0
> Ahg473243 jgi|Araly1|473243|fgenesh2_kg.1__3197__AT1G30220.1
Length=1859
Score = 2883 bits (1561), Expect = 0.0
Identities = 1695/1762 (96%), Gaps = 0/1762 (0%)
Strand=Plus/Plus
Query 25 aaaaaaaaaTGGAGGGAGGAATAATACATGGAGGAGCAGATGAATCAGCTTTCAAAGAAT 84
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAAAAAAAATGGAGGAAGGAATAATACATGGAGGAGCTGATGAATCAGCTTTCAAAGAAT 60
Query 85 GTTTCTCTCTAACATGGAAGAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCCGGAATCG 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTTCTCTCTAACATGGAAGAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCCGGAATCG 120
Query 145 GTGGTCTTCTCTTTGGTTACGACACCGGAGTGATATCAGGTGCTCTGCTTTATATCAGAG 204
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 121 GTGGTCTTCTCTTTGGTTATGACACTGGAGTGATATCAGGAGCTCTGCTTTATATCAGAG 180
Query 205 ATGATTTCAAGTCTGTTGACAGAAATACTTGGTTACAGGAGATGATAGTGAGCATGGCAG 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATGATTTCAAGTCTGTTGACAGAAATACTTGGTTACAGGAGATGATAGTGAGCATGGCGG 240
Query 265 TTGCAGGAGCCATCGTTGGAGCCGCCATAGGAGGTTGGGCGAACGACAAATTAGGGAGGA 324
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 241 TTGCAGGAGCCATAGTTGGAGCCGCCATAGGAGGTTGGGCGAACGATAAATTCGGGAGGA 300
Query 325 GAAGCGCGATTCTCATGGCGGATTTCCTCTTTTTATTAGGAGCTATCATTATGGCGGCTG 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GAAGCGCGATTCTCATGGCGGATTTCCTCTTTTTATTAGGAGCTATCATTATGGCGGCAG 360
Query 385 CTCCTAACCCGTCCCTCCTTGTCGTTGGCCGTGTTTTTGTGGGCCTCGGGGTCGGGATGG 444
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 361 CTCCTAACCCGTCCCTCCTTGTCGTTGGCCGTGTATTTGTGGGACTCGGGGTTGGGATGG 420
Query 445 CCTCGATGACCGCTCCTCTATACATCTCAGAAGCTTCGCCTGCTAAGATCAGAGGAGCTT 504
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 421 CCTCGATGACCGCTCCTCTATACATCTCAGAAGCTTCTCCTGCCAAGATTAGAGGAGCTT 480
Query 505 TGGTCAGTACTAATGGGTTTCTCATTACCGGAGGACAGTTCTTGTCTTACCTCATAAACT 564
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TGGTCAGTACCAATGGGTTTCTCATTACCGGAGGACAGTTCTTGTCTTACCTCATCAACT 540
Query 565 TAGCCTTTACTGATGTGACCGGAACGTGGAGATGGATGCTCGGAATCGCCGGAATTCCAG 624
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 541 TAGCCTTTACTGATGTGACCGGAACGTGGAGATGGATGCTCGGAATCGCTGGAATTCCCG 600
Query 625 CTCTTTTACAGTTTGTCTTAATGTTTACACTCCCGGAGTCACCTCGATGGTTATACCGCA 684
||||||| |||||| || |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 601 CTCTTTTGCAGTTTATCCTAATGTTTACACTCCCGGAGTCTCCTCGTTGGTTATACCGCA 660
Query 685 AGGGAAGAGAAGAAGAGGCTAAAGCGATTCTAAGAAGAATATACTCAGCAGAAGATGTAG 744
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 661 AGGGAAGAGAAGAAGAGGCTAAAGCGATTCTGAGAAGAATATATTCAGCAGAAGATGTAG 720
Query 745 AACAAGAGATACGTGCACTTAAAGACTCAGTTGAAACAGAGATACTTGAAGAAGGGTCTT 804
| |||||||| ||||||||||||||||||||||| ||||||||| |||||||| || |
Sbjct 721 ACCAAGAGATTCGTGCACTTAAAGACTCAGTTGAGTTAGAGATACTCGAAGAAGGATCAT 780
Query 805 CCGAGAAAATCAACATGATCAAACTATGCAAAGCTAAAACCGTTAGACGAGGACTAATAG 864
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 781 CTGAGAAAATCAACATGATCAAACTATGCAAAGCCAAAACTGTTAGACGAGGACTAATAG 840
Query 865 CTGGTGTTGGTCTCCAAGTGTTTCAACAGTTCGTTGGGATCAACACAGTTATGTATTACA 924
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 CTGGTGTTGGTCTCCAAGTGTTTCAACAGTTCGTTGGAATCAACACAGTTATGTATTACA 900
Query 925 GTCCAACCATTGTTCAGCTTGCCGGTTTCGCTTCAAACAGAACAGCTCTTCTCTTGTCTC 984
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GTCCAACCATTGTTCAGCTCGCCGGTTTCGCTTCAAACAGAACAGCTCTTCTCTTATCTC 960
Query 985 TAGTTACCGCAGGACTTAATGCATTTGGTTCTATAATTAGCATTTACTTCATTGATAGAA 1044
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 961 TAGTTACCGCAGGACTTAACGCATTTGGTTCCATCATTAGCATTTACTTCATTGATAGAA 1020
Query 1045 TCGGAAGGAAAAAGCTTTTGATCATTAGCCTTTTCGGAGTCATTATCTCGCTAGGAATAC 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCGGAAGGAAAAAGCTTTTGATCATTAGCCTTTTCGGAGTCATTATCTCGCTAGGAATAC 1080
Query 1105 TAACCGGTGTTTTTTATGAAGCGGCTACTCACGCTCCTGCGATTAGCTCACTCGAGACAC 1164
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1081 TAACCGGTGTTTTCTATGAAGCGACTACTCACGCTCCTGCGATTAGCTCTCTCGAGACAC 1140
Query 1165 AAAGGTTCAATAATATTAGTTGTCCGGATTATAAGTCAGCTATGAATACCAATGCTTGGG 1224
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGGTTCAATAATATTACTTGTCCTGATTATAAGTCAGCTATGAATACCAATGCTTGGG 1200
Query 1225 ATTGTATGACTTGTTTGAAAGCTTCTTCTCCATCTTGTGGCTATTGTTCCTCTCCCATTG 1284
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 1201 ATTGTATGACTTGTTTGAAAGCTTCTTCTCCATCTTGTGGCTACTGTTCTTCTCCCACTG 1260
Query 1285 GAAAGGAACATCCCGGGGCATGTTGGATCTCTGATGATTCGGTTAAGGACTTATGTCATA 1344
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAAAGGAACATCCCGGGGCTTGTTGGATCTCTGATGATTCGGTTAAGGACTTATGTCATA 1320
Query 1345 ACGAAAACCGGCTTTGGTACACGAGAGGATGTCCTAGCAATTTTGGTTGGTTTGCTCTTC 1404
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1321 ACGAAAACCGGCTTTGGTACACGAGAGGATGTCCTAGTAATTTTGGTTGGTTTGCTCTTC 1380
Query 1405 TTGGATTGGGACTTTATATCATCTTCTTCTCTCCTGGAATGGGGACTGTTCCATGGATAG 1464
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTGGATTGGGACTTTATATCATTTTCTTCTCTCCTGGAATGGGGACTGTTCCATGGATAG 1440
Query 1465 TTAACTCAGAGATTTATCCATTGAGATTCAGAGGAATATGTGGAGGAATAGCTGCAACTG 1524
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1441 TTAACTCAGAGATTTATCCATTGAGATTCAGAGGAGTCTGTGGAGGAATAGCTGCAACTG 1500
Query 1525 CAAATTGGATATCAAATTTGATTGTGGCTCAATCTTTTTTGTCATTGACCGAAGCTATTG 1584
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1501 CAAATTGGATATCGAATTTGATTGTGGCTCAATCTTTTTTGTCACTGACTGAAGCTATTG 1560
Query 1585 GGACTTCTTGGACTTTTCTCATCTTTGGAGTGATCTCAGTCATTGCTCTTCTCTTTGTTA 1644
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1561 GGACTTCTTGGACTTTTCTCATATTTGGAGTGATCTCAGTCATTGCTCTTCTCTTTGTTG 1620
Query 1645 TGGTTTGTGTTCCGGAGACAAAAGGAATGCCAATGGAGGAGATTGAGAAGATGCTTGAAC 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGGTTTGTGTTCCGGAGACAAAAGGAATGCCAATGGAGGAGATTGAGAAGATGCTTGAAG 1680
Query 1705 GAAGATCGATGGAGTTTAAGTTTTGGAAGAAAAAATCAAAACTTGTTGAGAAACAAAACC 1764
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1681 GAAGATCTATGGAGTTTAAGTTTTGGAAGAAAATATCAAAACCTGTTGAGAAACAAAACC 1740
Query 1765 AGAGTGCATGAGAGAAACTCTT 1786
||||||||||||||||||||||
Sbjct 1741 AGAGTGCATGAGAGAAACTCTT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5