BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30280.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473251 jgi|Araly1|473251|fgenesh2_kg.1__3205__AT1G30280.1 2333 0.0
> Ahg473251 jgi|Araly1|473251|fgenesh2_kg.1__3205__AT1G30280.1
Length=1644
Score = 2333 bits (1263), Expect = 0.0
Identities = 1540/1666 (92%), Gaps = 50/1666 (3%)
Strand=Plus/Plus
Query 17 ACACTCTCTTTACTTCGTCGCtttttttttCTTTAGACTTTCCGGTGATCGGAGCC---- 72
|||||||||||||||||||| | |||||||||| ||| |||||||||| |||||||
Sbjct 1 ACACTCTCTTTACTTCGTCG-TCTTTTTTTCTTCAGAATTTCCGGTGACCGGAGCCAAAA 59
Query 73 aaaaaaaG----GAAAGA-TTCACCGGCGAAATGGACGAATCTTGGCGTATGAAGATGGG 127
|||||||| |||| | ||||||| |||||||||||||| |||||||||||||||||
Sbjct 60 AAAAAAAGAAAAGAAAAACATCACCGGGGAAATGGACGAATCGTGGCGTATGAAGATGGG 119
Query 128 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCAATGGATGCTCGTATCGACGC 187
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 120 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCCATGGATGCTCGAATCGACGC 179
Query 188 GGAAGACTTCGCTGATGTTTTCGGCGGTCCGCCGCGAAGCGT-T-CTCACCCGAAAATTT 245
|||||||||||| ||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 180 GGAAGACTTCGCCGATGTTTTCGGCGGTCCGCCGCGAA-C-TCTCCTCACCCGAAAATTT 237
Query 246 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGATTTTTCAGCCTCC-GGGAAC 304
||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||
Sbjct 238 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGGTTTTCCGGCCTCCGGGGAA- 296
Query 305 TTTCTCCTCCGGCGGCTCTCTTGCGTCTTCTAAATCTCACGGAAGAAACTTACCGGCATT 364
|| | |||||| ||||||||| | ||||||||||||||||||||||| ||||| | ||
Sbjct 297 -TT-T-CTCCGGGGGCTCTCTTCCATCTTCTAAATCTCACGGAAGAAATTTACCATCGTT 353
Query 365 CAGAATTCCGTCCGGCGGGGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGTTC 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 CAGAATTCCGTCCGGCGGAGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGGTC 413
Query 425 TGCGAAGGAAGGATCGAAAAAACAGAGCTCGATGACGAAACCAAGATCGAATTCATCGTC 484
||||| || |||||||||| ||||||||||||| ||||| | ||||| |||||||||||
Sbjct 414 GGCGAAAGAGGGATCGAAAATACAGAGCTCGATGGCGAAATCGAGATCAAATTCATCGTC 473
Query 485 GATGCTCTCTTCCGAGGAGGCCAGTCCTCACTATCCTCCACCAGCGGCAGCTTCCGGCGA 544
|||||| ||||||||||||| |||||||||| | ||||||||||| ||||||||||||||
Sbjct 474 GATGCTTTCTTCCGAGGAGGTCAGTCCTCACAACCCTCCACCAGCAGCAGCTTCCGGCGA 533
Query 545 CGACTCCGGATTCTCTTCTTTCACTTCTAGACTTAGACCGTTAAACGTCCCGTCGAGAAG 604
|||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 534 CGACTCCGGATTTTCTTCTTTCACATCTAGACTCAGACCGTTAAACGTCCCGTCAAGAAG 593
Query 605 TCATAAACGAGAGTCAAAGAAACAGAGTTTCTCGGCGGTTCCAAAAGCAAAAGATTCATT 664
||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||
Sbjct 594 TCATAAACGAGAGCCAAAGAAACAGAGTTTCTCGGCGTTTCCAACAGCCAAAGATTCATT 653
Query 665 TTCCGGCCAAAATAACACACCGGAAAAAGCTGATTTCTACTACaaaaaaaCACATTTCGG 724
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 654 TTCCGGCCAAAATAACACACCGGAAAAAGCTGATTTTTACTACAAAAAACCACATTTCGG 713
Query 725 CGGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCGAATTCCTTCAGAAGAAT 784
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 714 CGGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCAAATTCCTTCAGAAGAAT 773
Query 785 GGATGACTACGGACCAAGCTCCCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGA 844
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGATGATTACGGACCAAGCTCTCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGA 833
Query 845 AGAAGACGACAACACTCATGCTAAACAGAGAACAAACAGAGACTGTAAAGTCGAAGA-G- 902
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
Sbjct 834 AGAAGACGACAACACTCATGCAAAACAGAGAACCACCAGAGACTGTAAAGTCGAAGACGT 893
Query 903 -GTAGTAGTagaagatgaagaagacgaagaagaagaagagaTGAGCTCTTACGTCATCGA 961
||||| |||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 894 AGTAGTCGTAGAAGATGAAGAAGAC---GAAGAAGAAGAGATGAGCTCTTACGTAATTGA 950
Query 962 GATAAACTCAGATCGATTCGACCGATACAGAGAAG-A--aggaggaggaggaggaggaAA 1018
||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||
Sbjct 951 GATAAACTCAGATCGATTCGATCGTTACAGAGAAGAAGGAGGAGGAGGAGGAGGAGGAAA 1010
Query 1019 TTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCTAAAGAAAGATCTCAAAGACC 1078
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 1011 TTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCAAAAGAGAGATCTCAACGACC 1070
Query 1079 AGAAGCAAAGCAAACagaagaagatgtaatcgattcgagaagaagtgaagaagaacccaa 1138
||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1071 AGAAGCAAAACAAATAGAAGAAGACGTAATCGATTCAAGAAGAAGTGAAGAAGAACCCAA 1130
Query 1139 atcagaagaagagatggagatggagatgaaagatgaagagataagaaTCTGGTTAACCGG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATCAGAAGAAGAGATGGAGATGGAGATGAAAGATGAAGAGATAAGAATCTGGTTAACCGG 1190
Query 1199 AAAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTTCTT-TGGTCAAATA 1257
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1191 AAAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTT-TTGTGGTCAAATA 1249
Query 1258 GCAATTGGGATTCGATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTT 1317
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GCAATTGGCATTCAATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTT 1309
Query 1318 ATCAAAGAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCAC 1377
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 ATCAAAAAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCAC 1369
Query 1378 CGATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCATGGGCTGTGT 1437
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1370 CGATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCGTGGGCTGTGT 1429
Query 1438 ACGTAACAAATGAAGGACTCTCGAGCTAAACCGGAATCCGCAAACTACATTCTTTTGGTT 1497
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1430 ACGTAACAAATGAAGGTCTCTCGAGCTAAACCGGAATCCGCAAACAATATTCTTTTGGTT 1489
Query 1498 TATATTAAACCAGA-------AGAATCGGTTTATAATCATGTAAGAAGAATAAGAGCAAA 1550
||||||||||| || |||||||||||||||| |||||||||||| |||||||||
Sbjct 1490 TATATTAAACCGGAGGTGTTCAGAATCGGTTTATAATAATGTAAGAAGAACAAGAGCAAA 1549
Query 1551 GTTA-AAGGAAAA-GTTTGTTTGtttttttGTAAAAGACTAAAAGTCATATGAACATTCC 1608
|||| || |||| |||| ||| |||||||||||||| | ||||||||||||||
Sbjct 1550 GTTATAAAAAAAATGTTT-TTT-TTTTTTTGTAAAAG--T------CATATGAACATTCC 1599
Query 1609 CATGTGTTGCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1654
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CATGTGT-GCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5