BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30360.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value Ahg473259 jgi|Araly1|473259|fgenesh2_kg.1__3213__AT1G30360.1 3945 0.0 > Ahg473259 jgi|Araly1|473259|fgenesh2_kg.1__3213__AT1G30360.1 Length=2563 Score = 3945 bits (2136), Expect = 0.0 Identities = 2449/2595 (94%), Gaps = 41/2595 (2%) Strand=Plus/Plus Query 12 AACAATAGAAAAATATCTTCCTTTCTTTTTCTGTGAATACACCAATAAAGTGACAAAAG- 70 ||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| Sbjct 1 AACAATAGAAAAATATCTT-CTTTCTTTTTCTGTGAATACATCTATAAAGT-ACAAAAGA 58 Query 71 -AAAAAGCCTGTCTTCTCTCACCTGT---AATTACCAGAAGACAATAT-AAACTG-TTAC 124 |||||||||||| |||||||||||| |||||||||||| ||| | |||| | |||| Sbjct 59 AAAAAAGCCTGTCCTCTCTCACCTGTAAAAATTACCAGAAG--AATCTCAAACGGTTTAC 116 Query 125 TTTCCTTCTTTTGTTGTACCCCTTTAAAAACGGCTACTTTAGAGAACTTGAGAAGATTTA 184 ||||||||||||||| | | ||||||||||||||||| || | | ||| |||||| Sbjct 117 TTTCCTTCTTTTGTT-TTCACCTTTAAAAACGGCTAC-TT---G-A---GAG--GATTTA 165 Query 185 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCTAAACCCAGATGGAGTTTGGATCTTT 244 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 166 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCAAAACCCAGATGGAGTTTGGATCTTT 225 Query 245 TCTTGTGTCCTTAGGGACATCTTTTGTTATCTTCGTCATTCTCATGCTTCTCTTCACCTG 304 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || Sbjct 226 TCTTGTGTCCTTAGGGACATCTTTTGTTGTCTTCGTCGTTCTCATGCTTCTCTTCACATG 285 Query 305 GCTTTCTCGCAAATCTGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGCT 364 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 286 GCTTTCTCGCAAATCCGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGTT 345 Query 365 GGAGCCATGGGAAGGCACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 424 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 GGAGCCATGGGAAGGTACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 405 Query 425 GACTTCCTCTGAACAAGATGTCGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 484 |||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 406 GACTTCTTCTGAGCAAGACGTTGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 465 Query 485 CTTCTTGAGCACTGTTCTGGGGATATTTGCTTGTTCCAGTCTTCTTCTCCTACCAACTCT 544 |||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 466 CTTCTTGACCACTGTTCTGGGGATATTTGCTTGTTCCGGTCTTCTTCTCTTACCGACTCT 525 Query 545 ACTGCCTCTAGCCGCTACAGACAACAACATAAAGAACACAAAGAATGCGACAGATACCAC 604 |||||||||||||||||||||||||||| |||||||||| || || ||||||||||| Sbjct 526 ACTGCCTCTAGCCGCTACAGACAACAACTTAAAGAACAC-AA-AA----ACAGATACCAC 579 Query 605 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACaaaaaaaaG 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACAAAAAAAAG 639 Query 665 TTCGAGGCTGTGGGCGTTCCTAGGAGCTGTTTACTGGATATCTTTGGTCACATATTTCTT 724 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 640 TCCGAGGCTGTGGGCGTTCCTAGGAGCGGTTTACTGGATATCTTTGGTCACATATTTCTT 699 Query 725 CTTGTGGAAAGCTTATAAGCATGTCTCTTCATTGAGAGCTCAAGCTCTGATGTCTGCTGA 784 |||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| Sbjct 700 CTTGTGGAAAGCTTATAAGCATGTCTCTACGTTGAGGGCACAAGCTCTGATGTCTGCTGA 759 Query 785 TGTAAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTGCACCACCTGACGGGCA 844 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 760 TGTCAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTTCACCACCTGACGGGCA 819 Query 845 GACACAGAAAGAGTTTATTGATTCTTATTTCAGAGAAATATACCCTGAGACATTCTACAG 904 ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 820 GACACAGAAAGAGTTCATCGATTCTTATTTCAGAGAAATATACCCCGAGACATTCTACAG 879 Query 905 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAAATATGGGAAAAATTGGAAGGTTA 964 |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 880 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAGATATGGGGAAAGTTGGAAGGTTA 939 Query 965 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATA-TTAGCAGCAACTAATAACCGTCCCACGA 1023 ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 940 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATACTT-GCAGCAACTAATAACCGACCCACGA 998 Query 1024 ACAAAACCGGCTTCTGTGGGCTAGTCGGTAAACAAGTAGACAGCATTGAGTATTACACTG 1083 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 999 ACAAAACCGGCTTGTGTGGGCTAGTCGGTAAACAAGTTGACAGCATTGAGTATTACACCG 1058 Query 1084 AGCTAATCAACGAGTCTGTAGCCAAACTGGAAACAGAGCAGAAAGCGGTTCTTGCTGAGA 1143 ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 1059 AGCTAATCAACGAGTCTGTAGCCAATCTAGAAACAGAGCAGAAAGCGGTTCTTGCCGAGA 1118 Query 1144 AGCAGCAAACCGCAGCAGTGGTTTTCTTCACAACCAGGGTTGCTGCTGCATCAGCAGCTC 1203 ||||||||||||| |||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct 1119 AGCAGCAAACCGCGGCAGTGGTCTTCTTCACAACCCGGGTTGCCGCCGCATCAGCCGCTC 1178 Query 1204 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCTGAGCCACGGC 1263 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1179 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCCGAGCCTCGGG 1238 Query 1264 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1298 Query 1324 TCTACTTCTTTGTTGCAGTGACCATTCTGTTTTACATGATACCAATCGCGTTCGTCTCTG 1383 |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1299 TCTACTTCTTTGTTGCTCTGACCATTCTGTTTTATATGATCCCAATCGCGTTCGTCTCTG 1358 Query 1384 CCATCACCACTCTTAAGAATCTTCAGAGGATTATTCCGTTCATAAAGCCGGTTGTGGAGA 1443 | |||||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||| Sbjct 1359 CAATCACCACTCTTGAGAATCTTCAGAAGATTATCCCGTTCATAAAGCCGATTGTGGAGA 1418 Query 1444 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAGATTGCGCTCATTGTTTTCT 1503 |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| Sbjct 1419 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAAATTGCGCTCCTCGTTTTCT 1478 Query 1504 TGGCCATGTTGCCGAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGGATTCCTTCACAGA 1563 |||| |||||||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct 1479 TGGCGATGTTGCCTAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGAATTCCGTCGCAGA 1538 Query 1564 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCGGTCTTTAATGTCTTCA 1623 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1539 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCAGTCTTTAATGTCTTCA 1598 Query 1624 TTGGTGTTACCCTTGCTGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1683 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 TTGGTGTTACCCTTGCGGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1658 Query 1684 AACTCGACATGATTATTAACCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCC 1743 ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1659 AACTCGACATGGTCATTAATCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCT 1718 Query 1744 TGACCTACGTTGCTCTCAAGTTCTTTATCGGTTATGGCCTTGAGCTGTCTCGGATCATAC 1803 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1719 TGACCTACGTTTCTCTCAAGTTCTTTATCGGTTATGGCCTTGAACTGTCTCGGATCATAC 1778 Query 1804 CTTTGATAATCTTCCACCTGAAAAAGAAGTATCTCTGCAAAACCGAAGCGGAGGTCAAAG 1863 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1779 CTTTGATAATCTTCCACCTGAAAAAGAAGTATGTCTGCAAAACCGAAGCGGAGGTCAAAG 1838 Query 1864 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACATGCTCATCC 1923 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1839 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACCTGCTCATCC 1898 Query 1924 TCACAATCACGTTCTGCTATTCAGTCATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1983 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1899 TCACAATCACGTTCTGCTATTCTGTAATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1958 Query 1984 ACTTTGGTTTAGGCTGGCTAGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2043 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1959 ACTTCGGTTTAGGCTGGCTGGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2018 Query 2044 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGCATACTAGCAGCGTTGTTTC 2103 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2019 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGGATACTAGCAGCGTTGTTTC 2078 Query 2104 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTTG 2163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2079 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTCG 2138 Query 2164 TGATCCCTCTCATTATCACCTCTCTCATCTTCGGATATGTGTGCCGCCAGAAATTCTACG 2223 ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| Sbjct 2139 TGATCCCTCTCATCATCACCTCTCTCATCTTCGGTTACGTGTGCCGCCAGAAATTCTACG 2198 Query 2224 GAGGGTTCGAACACACAGCTCTCGAGGTAGCTTGCCGTGAGCTGAAGCAGAGTCCAGACC 2283 |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 2199 GAGGGTTCAAACACACAGCTCTGGAGGTGGCTTGCCGTGAGCTGAAGCAGAGTCCGGACC 2258 Query 2284 TAGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAACCAGAAGAAC 2343 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2259 TCGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAAGCAGAAGAAC 2318 Query 2344 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAACGCAATAGCAGGCGTTTAAA 2403 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 2319 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAATGCAATAGGAGGCGTTTAAA 2378 Query 2404 ATTTGAATCCAATCCCCAAATTATCTCATAGAtttgttttgctggttttttagaagcttt 2463 ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | Sbjct 2379 GTTTGAATCCAATCCC-AA-TTATCTCATAGATTTGTTTTGTTGGTTTTTTAGAAGCTGT 2436 Query 2464 tattgttatgtgtgtgaattttagggtttgtttaGGATTCTTCTTTGTATGTGTTCCATG 2523 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 2437 TATTGTTGTGTGTGTGAATTTTAAGGTTTGTTTAGGATTCTTCTTTGTATGTGTTCT-TG 2495 Query 2524 GTTGTTGTAACTTGTAACTTTGTAAGCTACTTTTAAACATCAACTTGATTTTTCATCATT 2583 | ||||| | |||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2496 G--GTTGT---T-GTAACTTTGTAAGCTACTTTTAAATATCAACTTGATTTTTCATCAGT 2549 Query 2584 AAT-ATTCTTCTACT 2597 | | ||||||||||| Sbjct 2550 A-TGATTCTTCTACT 2563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98044290630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5