BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30380.1

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922093 jgi|Araly1|922093|scaffold_103374.1                        686    0.0  


> Ahg922093 jgi|Araly1|922093|scaffold_103374.1
Length=439

 Score =  686 bits (371),  Expect = 0.0
 Identities = 417/439 (95%), Gaps = 3/439 (1%)
 Strand=Plus/Plus

Query  108  TTTGTAGAATCAACTAAGAAAATGGCTAGCACTATGATGACTACATTGCCTCAGTTCAAT  167
            |||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  1    TTTGTAGATTCAGCTAAGAAAATGGCGAGCACTGTGATGACTACATTGCCTCAGTTCAAT  60

Query  168  GGTCTTCGAGCCACCAAAATCTCTGCAGCTCCTGTACAAGGCCTGGCAAGTGTTCAGCCC  227
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GGTCTTCGAGCCACCAAGATCTCTGCAGCTCCTGTTCAAGGCCTGGCAAGTGTTCAGCCC  120

Query  228  ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAA--GT-GTGACTTCATCGGTTCATCA  284
            |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||
Sbjct  121  ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAAGTGTGGTGACTTCATTGGTTCATCA  180

Query  285  ACAAATCTGATAATGGTAACGTCGACGACCCTGATGTTGTTCGCGGGGAGATTCGGACTT  344
            |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct  181  ACAAATCTGATAATGGTAACATCTACGACGCTGATGTTGTTTGCGGGGAGATTCGGACTT  240

Query  345  GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCAGGT  404
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCGGGT  300

Query  405  CTACAAACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT  464
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTACAGACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT  360

Query  465  GGTCATATCATCGGTGTAGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTGAAGT  524
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct  361  GGTCATATCATCGGTGTTGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTAAAAT  420

Query  525  TCCTAAAGCTCTTTTATTT  543
            |  ||| ||||||||||||
Sbjct  421  TATTAATGCTCTTTTATTT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829729410


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5