BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30380.1 Length=755 Score E Sequences producing significant alignments: (Bits) Value Ahg922093 jgi|Araly1|922093|scaffold_103374.1 686 0.0 > Ahg922093 jgi|Araly1|922093|scaffold_103374.1 Length=439 Score = 686 bits (371), Expect = 0.0 Identities = 417/439 (95%), Gaps = 3/439 (1%) Strand=Plus/Plus Query 108 TTTGTAGAATCAACTAAGAAAATGGCTAGCACTATGATGACTACATTGCCTCAGTTCAAT 167 |||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 1 TTTGTAGATTCAGCTAAGAAAATGGCGAGCACTGTGATGACTACATTGCCTCAGTTCAAT 60 Query 168 GGTCTTCGAGCCACCAAAATCTCTGCAGCTCCTGTACAAGGCCTGGCAAGTGTTCAGCCC 227 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GGTCTTCGAGCCACCAAGATCTCTGCAGCTCCTGTTCAAGGCCTGGCAAGTGTTCAGCCC 120 Query 228 ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAA--GT-GTGACTTCATCGGTTCATCA 284 ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| Sbjct 121 ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAAGTGTGGTGACTTCATTGGTTCATCA 180 Query 285 ACAAATCTGATAATGGTAACGTCGACGACCCTGATGTTGTTCGCGGGGAGATTCGGACTT 344 |||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct 181 ACAAATCTGATAATGGTAACATCTACGACGCTGATGTTGTTTGCGGGGAGATTCGGACTT 240 Query 345 GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCAGGT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCGGGT 300 Query 405 CTACAAACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT 464 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTACAGACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT 360 Query 465 GGTCATATCATCGGTGTAGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTGAAGT 524 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 361 GGTCATATCATCGGTGTTGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTAAAAT 420 Query 525 TCCTAAAGCTCTTTTATTT 543 | ||| |||||||||||| Sbjct 421 TATTAATGCTCTTTTATTT 439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829729410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5