BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30470.1 Length=2939 Score E Sequences producing significant alignments: (Bits) Value Ahg473272 jgi|Araly1|473272|fgenesh2_kg.1__3226__AT1G30470.1 3969 0.0 Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771 418 1e-115 > Ahg473272 jgi|Araly1|473272|fgenesh2_kg.1__3226__AT1G30470.1 Length=2954 Score = 3969 bits (2149), Expect = 0.0 Identities = 2398/2517 (95%), Gaps = 22/2517 (1%) Strand=Plus/Plus Query 11 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACA-TCCAATCTCTA 69 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACATTCC-ATCTCTT 59 Query 70 TCGATCTCAGATTCCAATTTCTGCGAATATTTTCTTCCCAGAGAGATTACAGATTCTAGG 129 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 60 TCGATCTCAGATTCCAATTCCTGCGAATTTTTTCTTCCCATAGAGATTACAGATTCTAGG 119 Query 130 GTTTCGAATAG-TTCTTTCCAATCTAGTCTTCTTCCTTTTGTTTCTCGGG-CGAAATTTC 187 |||||| |||| |||||||||||| ||| ||||| ||||| | ||| ||| ||||||||| Sbjct 120 GTTTCG-ATAGCTTCTTTCCAATCGAGTTTTCTT-CTTTTATCTCT-GGGACGAAATTTC 176 Query 188 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGACAATTCGACG---TCTTC-TTGA 243 |||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||| Sbjct 177 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGGCAATTCGACGTTTTTTTCTTTGA 236 Query 244 GCTGCAAAGATGTTCTGGCGAATGGCTGGATTATCAACGGCGTCTGCCGTTGAAGCAATT 303 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 237 GCTGCAAAGATGTTCTGGCGAATGGCGGGATTGTCAACGGCGTCTGCCGTTGAAGCAATT 296 Query 304 TTGGATAAAGATAGTTTCACATTAGAGGATCTTCTTGACGAGGATGAAATTATTCAAGAA 363 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 297 TTGGATAAAGATAGTTTCACATTAGAGGACCTTCTTGACGAGGATGAAATTATTCAAGAA 356 Query 364 TGCAAAGCCCTGAATGGACGACTCTTAAATTTCTTGAGAGAAAAAGTGCAAGTGGAACAA 423 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 357 TGCAAAGCCCTGAACGGACGACTCTTAAATTTCTTGAGAGAAAGAGTGCAAGTGGAACAA 416 Query 424 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGACGTGGAAAAGAAGCGAACATTCAAG 483 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 417 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGATGTGGAAAAGAAGCGAACATTCAAG 476 Query 484 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 536 Query 544 GTAGAAGATGAGGAGTTGATGTTATTATTGTTTTCGTTTTTGGAAGCTAAAGAAACCCAT 603 ||||| ||||||||||||||| || | |||||||||| || |||||||||||||||||| Sbjct 537 GTAGAGGATGAGGAGTTGATGCTAGTGCTGTTTTCGTTCTTAGAAGCTAAAGAAACCCAT 596 Query 604 AACTCATTACTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 663 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 597 AACTCATTGCTTGCCGGGTACTTCAGTAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 656 Query 664 ATCCCATTCATGCAATTTATAAAAGATCATCAAGAAATTCTGAAGCAGCTTGTTGATTTG 723 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 657 ATCCCTTTCATGCAATTTATAAAAGATCATCAAGAAATACTGAAGCAGCTTGTTGATTTG 716 Query 724 ATTGGTATTACATCTATTATGGAGGTTTTAAAACGCCTGGTTGGTACTGATGAACACCTA 783 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 717 ATTGGTATTACATCTATAATGGAGGTTTTAAAACGTCTGGTTGGTACTGATGAGCACCTA 776 Query 784 TATTCAAACTATACAAGTGCAATGCAGTGGATAGAAGATACGGATGTTTTAGAGATGATT 843 ||||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||| Sbjct 777 TATTCAAACTACACAAGTGCAATGCAGTGGGTAGAGGATACAGATGTGTTAGAGATGATT 836 Query 844 GTGGACAAGTTTGGCTCTTCGGAGTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTG 903 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 837 GTGGACAAGTTTGGCTCCTCGGATTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTT 896 Query 904 TGTACTGTTGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGCTGC 963 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 897 TGTACTGTAGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGTTGT 956 Query 964 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1016 Query 1024 TCGTTATCTGTATGCATATCTCTACTCGATCCTAAGAGGTTTACACTGGGCACTTATCAT 1083 || |||||||||||||||||||| || |||||||||||||||||| |||| ||||||||| Sbjct 1017 TCATTATCTGTATGCATATCTCTGCTGGATCCTAAGAGGTTTACATTGGGGACTTATCAT 1076 Query 1084 ATATATGGTCGTCAACTT-ACCCATGGAAGCATGGTAACTAATCCCGAGACAGTTGAGGG 1142 |||||||| |||||| || |||||||||||||||||||||||||| |||||||| ||||| Sbjct 1077 ATATATGGCCGTCAA-TTAACCCATGGAAGCATGGTAACTAATCCTGAGACAGTGGAGGG 1135 Query 1143 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGGTGT 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1136 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGATGT 1195 Query 1203 TTTGTTAACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1262 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TTTGTTGACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1255 Query 1263 AGAGTTTATTTCAGTCTTGCTCACTGTCGGTAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1322 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1256 AGAGTTTATTTCAGTCTTACTCACTGTCGGAAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1315 Query 1323 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTTGAGTATCCCTACAACAATTTTTT 1382 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1316 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTCGAGTATCCCTACAACAATTTTTT 1375 Query 1383 GCATCACCATGTGGAGAATGTAATTCTCTCATGTATGGAGAGCAAAAACTCTCAACTTGT 1442 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1376 GCATCACCATGTGGAGAATGTAATTCTCTCATGTTTGGAGAGCAAAAACTCTCAACTTGT 1435 Query 1443 TGACCATCTTCTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAGGACTC 1502 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1436 TGACCATCTTTTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAAGACTC 1495 Query 1503 CACATTAACTGCTGGTGATTCTGATAAGCTTCAGCCTACAGTCCCTGCAGAGGGTAAAAA 1562 ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||| Sbjct 1496 CACATTAACTGCTAGTGATTCTAATAAGCTTCAGCCGACAGTCCCTGCAGAGGGTAGAAA 1555 Query 1563 GCCACTCAGGATTGGAAACATCGGTCATTTGACTCGTATCTCCAACAAACTTCTTCAGCT 1622 ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 1556 GCCACTCAGGATTGGAAACATTGGTCATATGACTCGTATCTCGAACAAACTTCTTCAGCT 1615 Query 1623 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1675 Query 1683 GCAGACAGATGTCTTGTCGAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1742 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 GCAGACAGATGTATTGTCAAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1735 Query 1743 GAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1802 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 GAGGCCAACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1795 Query 1803 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCTTTTCGATATGGAATTTA 1862 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1796 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCCTTTCGGTATGGAATTTA 1855 Query 1863 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGCGATGATGAGGATGTCTA 1922 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1856 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGTGATGATGAGGATGTCTA 1915 Query 1923 CTTTGATGATGAATCTGCAGAAGTCGTCATATCCTCCTTGCGCCTTGGAGATGACCAGGA 1982 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1916 CTTTGATGATGAATCTGCAGAAGTCGTCATATCTTCCTTGCGCCTTGGAGATGATCAGGA 1975 Query 1983 GAGTGATTCTCTCTTCACAAATTCAAACTGGTTCGCATTCGATGATGATAAAGCTGCGAA 2042 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1976 GAGCGATTCTCTCTTCACAAATTCAAACTGGTTTGCATTCGATGATGATAAAGCTGCAAA 2035 Query 2043 TGAGCGCTCAATGACCTCAGCTGCTTCCCCTTCACCCAATGCTGATGGAGATGGTGAAGA 2102 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || Sbjct 2036 TGAGCGCTCAATGAGCTCAGCTACTTCCCCTTCACCCAATGCTGATGGAGATGGTGACGA 2095 Query 2103 TGATGATGATGTCGTCATAGGCGAAGCCGATGAATTCAACGCCACTGCAGCCTCTTCTCC 2162 |||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||| || Sbjct 2096 TGATGATG-T--CGTCATAGGCGAAGCCGATGAATTCAACGACACTGCAGCTTCTTCCCC 2152 Query 2163 ACCTGTTGATATGGAAACAGAGGATTCTACATCAAAGCATCCTTCTGAAAACCCGAGTGA 2222 ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2153 ACCTGGTGATATGGAAACAGAAGATTCTACATCAAAGCATCCTTCTGAAAATCCGAGTGA 2212 Query 2223 ACCAGAACCTGAAAAGTCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACCGC 2282 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 2213 ACCAGAACCTGAAAAATCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACTGC 2272 Query 2283 ACCACCTTCTTCCAACCCAGAGGAGACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2342 ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 2273 ACC---TTCTTCCAACCCAGATGAAACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2329 Query 2343 GAAAGAGGATAatgatgatgatgatgatACTGATAACAAAAGTGCAGTGAAAACACCAGG 2402 ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 2330 GAAAGAGGATAATGATGATGATGAT-AC-C-GATAACAAAAGTGCAGTGAAAACACCAGG 2386 Query 2403 TGTACCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2462 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2387 TGTATCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2446 Query 2463 GAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAGCTCACCAAAAGCGAGTGG 2519 || |||| ||||||| ||||||||||||||||| |||| |||||| ||||| ||||| Sbjct 2447 GAGCTCATCAAAAGCGAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGG 2503 Score = 760 bits (411), Expect = 0.0 Identities = 471/499 (94%), Gaps = 7/499 (1%) Strand=Plus/Plus Query 2442 GAGTGGTGTTGAACCCACTGAGAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAG 2501 |||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 2462 GAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGGCATTGAACCCACGGAGAC 2521 Query 2502 CTCACCAAAAGCGAGTGGAGCTGAAGTAACTGGA-AACTTGAGAGATTCCGATCCTGCTG 2560 |||||| ||||| |||||||||||||||||| || ||||||||||||| ||||||||||| Sbjct 2522 CTCACCTAAAGCTAGTGGAGCTGAAGTAACT-GAGAACTTGAGAGATTACGATCCTGCTG 2580 Query 2561 AATCTCATGCGGATGCTAAAAGCTCTGAACCTGAAAGCCCTCATGGGACAAAAGAAACAG 2620 |||| ||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||| Sbjct 2581 AATCGCATGCAGATGCGAAAAGCTCTGAACCTGAAAGCCCCCATGAGACAAAAGAAACAG 2640 Query 2621 AGGTTGCAGCAGAAGCAGATACCAAAGAGACCGAAGAGGCTGTGAAGGAACCAGAGAAGG 2680 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 2641 AGGTTGCAGCAGAAGCAGATACCAAAGAGAAAGAAGAAGCTGTGAAGGAACCAGAGAAGG 2700 Query 2681 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2701 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2760 Query 2741 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCTAtttttttCT 2800 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2761 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCT-TTTTTT-CT 2818 Query 2801 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2819 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2878 Query 2861 ATTGTCGACCAAAATTTGTTACTAGCTTTTCATATTTTATTAGTATAATCTTTTACCTCA 2920 ||||||| ||||||| |||| ||||||||||||| | || ||||||||||||||||||| Sbjct 2879 ATTGTCGTCCAAAAT--GTTAGTAGCTTTTCATATCT-ATCAGTATAATCTTTTACCTCA 2935 Query 2921 GCTAGACTCATCAAGTGTC 2939 ||||||||||||||||||| Sbjct 2936 GCTAGACTCATCAAGTGTC 2954 > Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771 Length=2166 Score = 418 bits (226), Expect = 1e-115 Identities = 254/268 (95%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 480 CAAGTTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAAC 539 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 894 CAAGTTTCCTTTCATTGCCTGTGAAATCTTCACATGTGAGATTGAAATGATACTGAAAAC 953 Query 540 ACTAGTAGAAGATGAGGAGTTGATGTTATTATTGTTTTCGTTTTTGGAAGCTAAAGAAAC 599 |||||| || ||||||||||||||| |||| |||||||||| || |||| ||||||||| Sbjct 954 ACTAGTCGAGGATGAGGAGTTGATGCTATTGCTGTTTTCGTTCTTAGAAGATAAAGAAAC 1013 Query 600 CCATAACTCATTACTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAA 659 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 CCATAACTCATTGCTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAA 1073 Query 660 GACGATCCCATTCATGCAATTTATAAAAGATCATCAAGAAATTCTGAAGCAGCTTGTTGA 719 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1074 GACGATCCCTTTCATGCAATTTATAAAAGATCATCAAGAAATACTGAAGCAGCTTGTTGA 1133 Query 720 TTTGATTGGTATTACATCTATTATGGAG 747 ||| ||||||||||||||||| |||||| Sbjct 1134 TTTAATTGGTATTACATCTATAATGGAG 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110956883685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5