BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30500.2 Length=970 Score E Sequences producing significant alignments: (Bits) Value Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2 1371 0.0 Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1 303 1e-81 Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2 291 9e-78 > Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2 Length=945 Score = 1371 bits (742), Expect = 0.0 Identities = 863/920 (94%), Gaps = 13/920 (1%) Strand=Plus/Plus Query 58 TCGTCAGAGAAAATTGCAGAGAGAATTCTGCTTCGGACATTAAGCTCATGAGTCATGACT 117 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 32 TCGTCATTGAAAATTGCAGAGAGAATTCTCCTTCGGACATTAAGCTCATGAGTCATGACT 91 Query 118 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 151 Query 178 TCTCATTTCCAACCACCAATCCCTTCTGCAAGAAATTATGAATCAATTGTTACAAGTTTA 237 |||||||||||||||||||| ||| ||| ||||||||||||||| || | |||||||||| Sbjct 152 TCTCATTTCCAACCACCAATTCCTCCTGGAAGAAATTATGAATCCATAGCTACAAGTTTA 211 Query 238 GTCTACTCAGACCCGGGGACT-ACAAATTCCATGGCACCTGGACAATATCCATATCCAGA 296 |||||||| || |||| || | ||| | | ||||||||||||||||||||||||||| Sbjct 212 GTCTACTCGGAACCGGTTCCTCAAAAACTGAA-GGCACCTGGACAATATCCATATCCAGA 270 Query 297 TCCTTACTACAGAAGCATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 356 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 271 TCCTTACTACAGAAGCATCTTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 330 Query 357 GTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAACCTGT 416 |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 331 GTTGATGGGAATGCAGCAACAAGGTGTTCCTTTACCATCTGATGCAGTTGAGGAACCTGT 390 Query 417 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACT 476 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 391 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGGCAATCTAGAGCAAGACT 450 Query 477 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCGTATTTGCATGAATCTCGGCATTT 536 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 451 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCATATTTACATGAATCACGGCATTT 510 Query 537 GCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGA-GG 595 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 511 GCATGCGATAAGACGACCAAGAGGATGTGGCGGTCGGTTTCTAAATGCCAAGAAGGACGG 570 Query 596 ATGAGCATCACGAAGACAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCG 655 ||||||||||||||||||| ||||||||||| |||||||| ||| ||| |||||||| Sbjct 571 C-GAGCATCACGAAGACAGTACTCATGAAGAAACTTCCAACCTCAGCTCTGATAAATCCG 629 Query 656 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCCTACAAGTAGCTTTGTTGTATTTT 715 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 630 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCATCCAAGTAGCTTTGTTGTATTTT 689 Query 716 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTTTAGTGTATGATATATACAAATCTTTGT 775 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 690 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTT-AGTGTATGATATATACAAATCTTTGT 748 Query 776 ATAAAGGTATAGATAGGTTCTTGGGAAGCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 835 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 749 AGAAAGGTATAGATAGGTTCTTGGGA-GCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 807 Query 836 TGTGATTATTAAATAAAACCCACCGAGGAA-AAAGGGAAATAAATAA-TGTCCATGATGT 893 ||||||||||||||||||||||| |||||| ||||| |||||||||| |||| || |||| Sbjct 808 TGTGATTATTAAATAAAACCCACTGAGGAAGAAAGG-AAATAAATAAATGTC-ATAATGT 865 Query 894 TTAGTTAAATA---CAATGCTACTGATATTGTTTTGTTATAAGAAATTTTGGTAATAAAA 950 ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 866 TTAGTTAAATAGTACAATGCTACTTATATTGTTTTGTTGTAAGAAATTTTGGTAATAAAA 925 Query 951 CGAAGAATGGAAGAATCCAC 970 | || ||||||||||||||| Sbjct 926 CAAAAAATGGAAGAATCCAC 945 > Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1 Length=968 Score = 303 bits (164), Expect = 1e-81 Identities = 400/508 (79%), Gaps = 39/508 (8%) Strand=Plus/Plus Query 102 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 161 ||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| ||| Sbjct 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAA 160 Query 162 GCAAGAACAG-AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGA 218 | |||||| | |||||| || | | |||| || || ||||| | | ||| || || Sbjct 161 GAAAGAAC-GTCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGA 217 Query 219 ATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGG 278 ||| |||| ||||| | |||| | | ||| || | ||||||||| ||| Sbjct 218 ATCTATTGATACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGG 265 Query 279 ACAATATCCATATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCC 329 | ||| || |||||||||||||||||||||||||| ||| ||| | || | ||| Sbjct 266 GCTATACCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCC 325 Query 330 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCT 387 ||| || ||| || ||||| | || | ||||| |||||| |||| || | ||| ||||| Sbjct 326 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCA 383 Query 388 TTACCAT-CTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 446 || | || | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 TTGCAATGC-GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 442 Query 447 ACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCA 504 ||| |||||||| ||||| | |||| ||||||| | | ||| | | || ||||||| || Sbjct 443 ACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCA 500 Query 505 C-GTAAGCCGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATG 563 | ||||| || ||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 501 AAG-AAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATG 559 Query 564 TGGCGGGCGGTTTCTAAATGCCAAGAAG 591 |||||| |||||||| |||||||||||| Sbjct 560 TGGCGGACGGTTTCTCAATGCCAAGAAG 587 > Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2 Length=519 Score = 291 bits (157), Expect = 9e-78 Identities = 391/498 (79%), Gaps = 39/498 (8%) Strand=Plus/Plus Query 112 ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAG 171 |||||||||||| | |||||||| |||||||||| || |||||||| |||| |||||| | Sbjct 1 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAAC-G 59 Query 172 -AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGAATCAATTGTT 228 |||||| || | | |||| || || ||||| | | ||| || ||||| |||| | Sbjct 60 TCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGAATCTATTGAT 117 Query 229 ACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCA 288 |||| | |||| | | ||| || | ||||||||| ||| | ||| || Sbjct 118 ACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGGGCTATACCCG 165 Query 289 TATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCCACAACCGTAT 339 |||||||||||||||||||||||||| ||| ||| | || | |||||| || ||| Sbjct 166 TATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCCACATCCCTAT 225 Query 340 ACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCAT-CT 396 || ||||| | || | ||||| |||||| |||| || | ||| ||||| || | || | Sbjct 226 -CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCATTGCAATGC- 282 Query 397 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGC 456 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 283 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTCAGGCGC 342 Query 457 AGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCAC-GTAAGCCG 513 || ||||| | |||| ||||||| | | ||| | | || ||||||| || | ||||| Sbjct 343 AGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCAAAG-AAGCCA 399 Query 514 TATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGG 573 || ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 400 TACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTGGCGGACGG 459 Query 574 TTTCTAAATGCCAAGAAG 591 ||||| |||||||||||| Sbjct 460 TTTCTCAATGCCAAGAAG 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36026156565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5