BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30530.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473 2001 0.0
Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1 1016 0.0
Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359 1009 0.0
Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1 950 0.0
> Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473
Length=1365
Score = 2001 bits (1083), Expect = 0.0
Identities = 1266/1353 (94%), Gaps = 18/1353 (1%)
Strand=Plus/Plus
Query 259 ATGACCAAATTCTCCGAGCCAATCAGAGACTCCCACGTGGCAGTTCTCGCGTTTTTCCCC 318
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGATCAAATTATCCGAGCCAATCAGAGACTCCCACGTGGCAGTTCTCGCGTTCTTCCCC 60
Query 319 GTTGGCGCTCATGCCGGTCCTCTCTTAGCCGTCACTCGCCGTCTCGCCGCCGCTTCTCCC 378
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 61 GTTGGCGCTCATGCCGGTCCTCTCTTAGCCGTTACGCGCCGTCTCGCCGCCGCCGCTCCC 120
Query 379 TCCACCATCTTTTCTTTCTTCAACACCGCAAGATCAAACGCGTCGTTGTTCTCC-TC-T- 435
|||||||||||||||||||||||||||||| |||||||||| || ||||||||| | |
Sbjct 121 TCCACCATCTTTTCTTTCTTCAACACCGCACGATCAAACGCTTCCTTGTTCTCCGACATA 180
Query 436 GATCATCCCGAGAACATCAAGGTCCACGACGTCTCTGACGGTGTTCCGGAGGGAACCATG 495
|||||||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GATCATCCAGAAAACATCAGGGTCCACGACGTCGCTGACGGTGTTCCGGAGGGAACCATG 240
Query 496 CT---CGGGAATCCACTGGAGATGGTCGAGCTGTTTCTCGAAGCGGCTCCACGTATTTTC 552
|| ||||| ||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 241 CTAACCGGGAGTCCACTGGAGATGCTCGAGCTGTTTCTCGAAGCGGCTCCACGGAATTTC 300
Query 553 CGGAGCGAAATCGCGGCGGCAGAGA-TAGAAGTTGGAAAGAAAGTGACATGCATGCTAAC 611
||||| ||||| ||||||||||||| | ||||| || ||||||||||||| |||||||||
Sbjct 301 CGGAGAGAAATGGCGGCGGCAGAGACT-GAAGTCGGTAAGAAAGTGACATCCATGCTAAC 359
Query 612 AGATGCCTTCTTCTGGTTCGCAGCGGACATAGCGGCTGAGCTGAACGCGACTTGGGTTGC 671
||||||||||||||||||||||||||| || || |||||| |||| || |||||||||||
Sbjct 360 AGATGCCTTCTTCTGGTTCGCAGCGGATATGGCTGCTGAGATGAAGGCCACTTGGGTTGC 419
Query 672 CTTCTGGGCCGGCGGAGCAAACTCACTCTGTGCTCATCTCTACACTGATCTCATCAGAGA 731
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 GTTCTGGGCCGGCGGAGCGAACTCTCTCTGTGCTCATCTTTACACTGATCTCATCAGAGA 479
Query 732 AACCATCGGTC-TC-AA--AGATGTGAGTATGGAAGAGACATTAGGGTTTATACCAGGAA 787
||||||||| | || || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 AACCATCGG-CGTCAAAGTAGATGTGCGTATGGAAGAGACATTAGGGTTTATACCAGGAA 538
Query 788 TGGAGAATTACAGAGTTAAAGATATACCAGAGGAAGTTGTATTTGAAGATTTGGACTCTG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGAGAATTACAGAGTTAAAGATATACCAGAGGAAGTTGTATTTGAAGATTTGGACTCTG 598
Query 848 TTTTCCCAAAGGCTTTATACCAAATGAGTCTTGCTTTACCTCGTGCCTCTGCTGTTTTCA 907
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TTTTCCCAAAGGCTCTATACCAAATGAGTCTTGCTTTACCTCGTGCCTCTGCGGTTTTCA 658
Query 908 TCAGTTCCTTTGAAGAGTTAGAACCTACATTGAACTATAACCTAAGATCCAAACTTAAAC 967
|||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 659 TCAGTTCCTTTGAAGATTTAGAACCTACATTGACCCATAACCTAAGATCCAAACTTAAAC 718
Query 968 GTTTCTTGAACATCGCCCCTCTCACGTTATTATCTTCTACATCGGAGAAAGAGATGCGTG 1027
|||||||||||||||||||||||||||||||||||||||||||| | | || |||| |
Sbjct 719 GTTTCTTGAACATCGCCCCTCTCACGTTATTATCTTCTACATCG-ACACT-AG-TGCGGG 775
Query 1028 ATCCTCATGGCTGCTTTGCTTGGATGGGGAAGAGATCAGCTGCTTCTGTAGCGTACATTA 1087
||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 776 ATCCTCATGGCTGCTTTGCTTGGATGGAGAAGAGATCACCTGCTTCCGTAGCGTACATTA 835
Query 1088 GCTTCGGCACCGTCATGGAACCTCCTCCTGAAGAGCTTGTGGCGATAGCACAAGGGTTGG 1147
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 836 GCTTCGGCACCGTCATGGAACCGCCTCCTGTAGAGCTTGTGGCGATAGCACAAGGCTTGG 895
Query 1148 AATCAAGCAAAGTGCCGTTTGTTTGGTCGCTGAAGGAGAAGAACATGGTTCATCTACCAA 1207
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 AATCGAGCAAAGTGCCGTTTGTTTGGTCGCTTAAGGAGAAGAACATGGTTCATCTACCAA 955
Query 1208 AAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGTTCCTTGGGCTCCACAAGTGG 1267
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 956 AAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCTCCCCAAGTGG 1015
Query 1268 AACTGCTGAAACACGAGGCAATGGGTGTGAATGTGACACATTGTGGATGGAACTCAGTGT 1327
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1016 AACTGCTGAAACACGAGGCAACAGGTGTGAATGTGACACATTGTGGATGGAACTCGGTGT 1075
Query 1328 TGGAGAGTGTGTCGGCAGGTGTACCGATGATCGGCAGACCGATTTTGGCGGATAATAGGC 1387
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1076 TGGAGAGTGTGTCGGCAGGTGTACCGATGATTGGCAGACCGATTTTGGCTGATAATAGGC 1135
Query 1388 TCAACGGAAGAGCAGTGGAGGTTGTGTGGAAGGTTGGAGTGATGATGGATAATGGAGTCT 1447
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1136 TCAACGGAAGAGCAGTGGAGGTTGTGTGGAAGGTTGGAATGATGATGGATAATGGAGTCT 1195
Query 1448 TCACGAAAGAAGGATTTGAGAAGTGTTTGAATGATGTTTTTGTTCATGATGATGGTAAGA 1507
|||||||||| |||||||||||||||||| || | ||||| |||||||||||||||||||
Sbjct 1196 TCACGAAAGAGGGATTTGAGAAGTGTTTGCATCAAGTTTTGGTTCATGATGATGGTAAGA 1255
Query 1508 CGATGAAGGCTAATGCCAAGAAGCTTAAAGAAAAACTCCAAGAAGATTTCTCCATGAAAG 1567
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 1256 CGATGAAGGCTAATGCCAAGAAGCTTAAAGAAAAACTCCAAGAAGATGTCTCTAAGAAAG 1315
Query 1568 GAAGCTC-TTTAGAGAATTTCAAAATATTGTTG 1599
||||||| ||| |||||||||||| ||||||||
Sbjct 1316 GAAGCTCCTTT-GAGAATTTCAAAGTATTGTTG 1347
> Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1
Length=1387
Score = 1016 bits (550), Expect = 0.0
Identities = 1131/1403 (81%), Gaps = 73/1403 (5%)
Strand=Plus/Plus
Query 258 CATGACCAAATTCTCCGAGCCAATCAGAGACTCCCACGTGGCAGTTCTCGCGTTTTTCCC 317
|||| ||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 15 CATGGCCAAACCCTCCGAGCCAACCAGAGACTCCCACATGGCAGTTCTCGC---TTTCCC 71
Query 318 CGTT-GGCGCTCATGCCGGTCCTCTCTTAGCCGTCAC-TCGCCGTCTCGCCGCCGCTTCT 375
| || ||| ||||||| | ||||||| |||||||||| | ||||||||||| ||||| ||
Sbjct 72 C-TTCGGCACTCATGCAGCTCCTCTCCTAGCCGTCACGT-GCCGTCTCGCCACCGCTGCT 129
Query 376 CCCTCCACCATCTTTTCTTTCTTCAACACCGCAAGATCAAACGCGTCGTTGTTCTCCTCT 435
|||||||| |||| || ||||||| ||||||| |||| ||| ||||||| |||||||
Sbjct 130 CCCTCCACTGTCTTCTCCTTCTTCAGCACCGCACGATCCAACTCGTCGTTACTCTCCTCC 189
Query 436 GATCATCCCGAGAACA-TCAAGGTCCACGACGTCTCTGACGGTGTTCCGGAGGGAACCAT 494
|||| ||||| ||||| || | |||||| ||||| ||||||||||||| |||||| ||||
Sbjct 190 GATCTTCCCGCGAACATTCGA-GTCCACAACGTCGCTGACGGTGTTCCTGAGGGATCCAT 248
Query 495 GCT--CGGG-AATCCACTGG-AGATGGTCGAGCTGTTTCTCGAAGCGGCTCCACG-TATT 549
| | |||| ||||||| || || ||| ||||||||||| |||||||| || | |||
Sbjct 249 GTTGACGGGTAATCCACAGGAAG-CGGTTGAGCTGTTTCTTGAAGCGGCACC-GGAGATT 306
Query 550 TTCCGGAGCGAAATCGCGGCGGCAGAGATAGAAGTTGGAAAGAAAGTGACA-TGCATGCT 608
|||||||| |||||| |||||| |||| ||||||||| | |||||| | | ||||| ||
Sbjct 307 TTCCGGAGGGAAATCAAGGCGGCGGAGACAGAAGTTGGTAGGAAAGTCA-AGTGCATCCT 365
Query 609 AACAGATGCCTTCTTCTGGTTCGCAGC-G-GAC-ATAGCGGCTGAGCTGAACGCGACTTG 665
|| ||||| ||| ||||||||||||| | ||| ||||| ||| |||| ||| | ||
Sbjct 366 TACGGATGCGTTCCTCTGGTTCGCAGCGGAGACGGCGGCGGCGGAGATGAAAGCGTCGTG 425
Query 666 GGTTGCCTTCT-GGGCCGGCGGAGCAAACTCACTCTGTGCTCATCTCTACACTGATCTCA 724
|||||||| || || |||||||||||||| ||| ||||||||||||||| ||| |||
Sbjct 426 GGTTGCCTACTATGG-AGGCGGAGCAAACTCGCTCACTGCTCATCTCTACACAGATGTCA 484
Query 725 TCAGAGAAACCATCGGTCTCAAAGATGTGAGTATGGAAGAGACATTAGGGTTTATAC-CA 783
||||||||| | ||||| |||||| || | ||||||| ||||||||||||||||| | ||
Sbjct 485 TCAGAGAAAACGTCGGTGTCAAAGGTGGGCGTATGGAGGAGACATTAGGGTTTAT-CTCA 543
Query 784 GGAATGGAGAATTA-CAGAGTTAAAGATATACCAG-AGGAAGTTGTATTT-GAAGATTTG 840
||||||| ||| | |||||| ||||| | ||||| ||| |||||| ||| | | | ||
Sbjct 544 GGAATGGGGAA-GATCAGAGTCAAAGACACACCAGAAGG-AGTTGTGTTTGGGA-ACTTA 600
Query 841 GACTCTG-TTTTCCCAAAGGCTTTATACCAAATGAGTCTTGCTTTACCTCGTGCCTCTGC 899
||||||| |||| | ||| | || |||||||| ||| |||||||||||||||| ||
Sbjct 601 GACTCTGTTTTTTCTAAA-ACGTTGCACCAAATGGGTCGTGCTTTACCTCGTGCCAAAGC 659
Query 900 TGTTTTCATCAGTTCCTTTGAAGAGTTAGAACCTACATTGAAC-TATAACCTAAGATCCA 958
||||||||||| |||||||||||| || || |||||||| || || || | || || |
Sbjct 660 TGTTTTCATCAATTCCTTTGAAGAATTGGATCCTACATT-TACAAATGACTTCAGTTCGA 718
Query 959 AACTT-AAACGTTTCTTGAA-CATCGCCCCTCTCACGTTATTATCTTCTACATCGGAGA- 1015
|| || | ||||| | | || ||||| |||||| | |||||||||||| ||||| | |
Sbjct 719 AA-TTCACACGTTACCT-AAGCATCGGTCCTCTCGCTTTATTATCTTCTCCATCGCAAAC 776
Query 1016 A---AGA--GATGCGTGATCCTCATGGCTGCTTTGCTTGGATGGGGAAGAGATCAGCTGC 1070
| | | |||| |||||||| || ||||| |||||||| | |||| |||| ||||
Sbjct 777 ATCCACACTAATGCACGATCCTCACGGTTGCTTGGCTTGGATCGAGAAGCGATCCCCTGC 836
Query 1071 TTCTGTAGCGTACATTAG-CTTCGGCACCGTCATGGAACCTCCTCCTGAAGAGCTTGTGG 1129
||||||||||||||| | |||||| | ||| | ||| ||||||| |||||||| ||
Sbjct 837 ATCTGTAGCGTACATT-GCCTTCGGTAGAGTCGCGTCACCGCCTCCTGGAGAGCTTGAGG 895
Query 1130 CGATAGCACAAGGGTTGGAATCAAGCAAAGTGCCGTTT-GTTTGGTCGCTGA-AGGAGAA 1187
||||||||||||| ||||| || || |||||||| ||| ||||||||||| | | ||||
Sbjct 896 CGATAGCACAAGGATTGGAGTCGAGTAAAGTGCC-TTTCGTTTGGTCGCT-ACAAGAGAT 953
Query 1188 GAACATGGTTCATCTACCAAAAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGT 1247
||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct 954 GAACATGGTTCATTTACCAAAAGGGTTTCTGGAACGGACAAGAGAGCAAGGGATGGTGGT 1013
Query 1248 TCCTTGGGCTCCACAAGTGGAACTGCTGAAA-CACGAGGCAATGGGTGTGAATGTGACAC 1306
|| ||||| || |||||||| ||||| ||| || || |||| ||||||| |||| | |
Sbjct 1014 CCCATGGGCACCTCAAGTGGAGCTGCT-AAACCATGAAGCAACGGGTGTGTTTGTGTCGC 1072
Query 1307 ATTGTGGATGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATCGGCAGAC 1366
|| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1073 ATGGTGGGTGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGCAGAC 1132
Query 1367 CGATTTT-GGCGGATAAT--AGGCTCAACGGAAGAGCAGTGGAGGTTGTGTGG-AAGGTT 1422
||||||| || |||| || || |||| | |||| | ||||||| ||||||| || ||
Sbjct 1133 CGATTTTCGG-GGATCATGCAG--TCAATGCAAGATCTGTGGAGGCTGTGTGGGAAA-TT 1188
Query 1423 GGAGTGATGATGGATA-ATGGAGTCTTCACGAAAGAA-GGATTTGAGAAGTGTTTGAAT- 1479
||| ||| ||| || ||||||| ||||| |||| | |||||| || || ||||| ||
Sbjct 1189 GGAATGACGATT-ATTGATGGAGTTTTCAC-AAAGGATGGATTTAAGGAGAGTTTGGATC 1246
Query 1480 GATGTTTTTGTTCATGATGATGGTAAGACGATGAAGGCTAATGCCAAGAAGCTTAAAGAA 1539
| ||||| ||||| |||||||| |||| |||||||| |||| | |||||||||||||||
Sbjct 1247 GG-GTTTTGGTTCAAGATGATGGCAAGAAGATGAAGGTTAATTCTAAGAAGCTTAAAGAA 1305
Query 1540 AAA-CTCCAAGAAGATTTCTCCATGAAAGGAAGCTC-TTTAGAGAATTTCAAAA-TATTG 1596
| | | |||| | | |||| | | |||||||||| |||| ||||||||||| | |||
Sbjct 1306 CTAGCAC-AAGACGCTGTCTCTACGGAAGGAAGCTCCTTTA-AGAATTTCAAAGGT-TTG 1362
Query 1597 TTGGACGAAATTGTGAAAGTTTA 1619
||||||||| |||||||||||||
Sbjct 1363 TTGGACGAAGTTGTGAAAGTTTA 1385
> Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359
Length=1386
Score = 1009 bits (546), Expect = 0.0
Identities = 1121/1389 (81%), Gaps = 77/1389 (6%)
Strand=Plus/Plus
Query 259 ATGACCAAATTCTCCGAGCCAATC-AGAGACTCCCACGTGGCAGTTCTCGCGTTTTTCCC 317
||||||||| ||| ||||||| | |||||||| ||||||||||||||||| |||| |
Sbjct 1 ATGACCAAACCCTCGGAGCCAA-CTAGAGACTCACACGTGGCAGTTCTCGC--TTTT--C 55
Query 318 CGTT-GGCGCTCATGCCGGTCCTCT-CTTAGCCGTCACTCGCCGTCTCGCCGCCGCTTCT 375
| || || |||| || | |||||| || | ||||||| ||||| |||||| ||||| ||
Sbjct 56 CTTTCGGTACTCACGCAGCTCCTCTCCTCA-CCGTCACGCGCCGCCTCGCCTCCGCTGCT 114
Query 376 CCCTCCACCATCTTTTCTTTCTTCAACACCGC-AAGATCAAACGCGTCG-T-TGTTCTCC 432
|| |||||| |||| || |||||||||||||| | ||| ||| | ||| | | ||| ||
Sbjct 115 CCTTCCACCGTCTTCTCCTTCTTCAACACCGCGCA-ATCCAACTCTTCGTTATTTTCCCC 173
Query 433 --TC--TG-ATC--ATC--C-CGAGAACATCAAG-GTCCACGACG-TCTCTGACGGTGTT 480
| | | | ||| | ||||||||| || ||| |||| | || | |||||||||
Sbjct 174 AGGCGACGAAGCAGATCGTCTGGAGAACATC-AGAGTCTACGATGTTC-CCGACGGTGTT 231
Query 481 CCGGAGGGA-ACCATG--C-TCGGGA-ATCCACTGGAGATGGTCGAGCTGTTTCTCGAAG 535
||||||||| | | || | ||||| | |||| |||| | ||||||||||||| ||||
Sbjct 232 CCGGAGGGATA-CGTGTTCACCGGGAGA-CCACAGGAGGCGATCGAGCTGTTTCTAGAAG 289
Query 536 CGGCTCCACG-TATTTTCCGGAGCGAAATCGCGGCGGCAGAGATAGAAGTTGGAAAGAAA 594
| || || | | ||||||||| |||||||||||||| |||| || ||||| | | |
Sbjct 290 CTGCGCC-GGAGAATTTCCGGAGAGAAATCGCGGCGGCGGAGACGGAGGTTGGTAGGGAC 348
Query 595 GTGACATGCATGCTAACAGATGCCTTCTTCTGGTTCGCAGCGGACATAGCGGCTGAGCTG 654
|||| ||| || | || ||||| || ||||||||||| || || || ||| | ||| ||
Sbjct 349 GTGAAATGTTTGTTGACTGATGCGTTTTTCTGGTTCGCGGCTGATATGGCGACGGAGATG 408
Query 655 AACGCGA-CTTGGGTTGCCTTCTGGGCCGGCGGAGCAAACTCACTCTGTGCTCATCTCTA 713
|| || | | ||| |||| || ||| ||| |||||||||||| ||| ||||||||||||
Sbjct 409 AATGC-ATCGTGGATTGCGTTTTGGACCGCCGGAGCAAACTCGCTCACTGCTCATCTCTA 467
Query 714 CACTGATCTCATCAGAGAAACCATCGGTCTCAAAG-A-T--GT--GAGTATGGAAGAGAC 767
||| |||||||||||||||||||||||| |||||| | | || | ||||||| |||||
Sbjct 468 CACAGATCTCATCAGAGAAACCATCGGTGTCAAAGAAGTAGGTGGGCGTATGGAGGAGAC 527
Query 768 ATTAGGGTTTATACCAGGAATGGAGAATTA-CAGAGTTAAAGATATACCAG-AGGAAGTT 825
|||||||||||| ||||||||||||| | |||||| ||||| | ||||| ||| ||||
Sbjct 528 ATTAGGGTTTATTTCAGGAATGGAGAA-GATCAGAGTCAAAGACACACCAGAAGG-AGTT 585
Query 826 GTATTT-GAAGATTTGGACTCTGTTTTC-CCAA-AGGCTTTATACCAAATGAGTCTTGCT 882
|| ||| | | |||| |||||||||||| |||| | || | |||||||| | ||||||
Sbjct 586 GTGTTTGGTA-ATTTAGACTCTGTTTTCTCCAAGATGC--TGCACCAAATGGGACTTGCT 642
Query 883 TTACCTCGTGCCTCTGCTGTTTTCATCAGTTCCTTTGAAGAGTTAGAACCTACATTGAAC 942
|||||||||||| |||| |||||||||| ||| |||||||| | || |||||||||| |
Sbjct 643 TTACCTCGTGCCACTGCGGTTTTCATCAATTCTTTTGAAGAACTGGATCCTACATTGACC 702
Query 943 TATAACCTAAGATCCAAACTT-AAACGTTTCTTGAACATCGCCCCTCTCACGTTATTATC 1001
||||||| ||||| ||| || ||||||| | ||||||| | |||||| |||||||||
Sbjct 703 AATAACCTCAGATCGAAA-TTCAAACGTTACCTGAACATTGGTCCTCTCGGGTTATTATC 761
Query 1002 TTCTACATCGGAGAAAGAGATGCGTGATCCTCATGGCTGCTTT-GCTTGGATGGGGAAGA 1060
|||||||| | || || ||| |||||||| ||||| ||| |||||||| |||||||
Sbjct 762 TTCTACAT-TG-CAACTAG-TGCACGATCCTCACGGCTG-TTTGGCTTGGATTGGGAAGA 817
Query 1061 GATCAGCTGCTTCTGTAGCGTACATTAGCTTCGGCACCGTCATGGA-ACCTCCTCCTGAA 1119
|||| |||||||||| |||||||||||||| || || ||||| || ||| ||||||| |
Sbjct 818 GATCCCCTGCTTCTGTGGCGTACATTAGCTTTGGTACGGTCAT-GACACCGCCTCCTGGA 876
Query 1120 GAGCTTGTGGCGATAGCACAAGGGTTGGAATCAAGCAAAGTGCCGTTTGTTTGGTCGCTG 1179
||||||| |||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 877 GAGCTTGCGGCGATAGCAGAAGGGTTGGAATCGAGTAAAGTGCCGTTTGTTTGGTCGCTT 936
Query 1180 AAGGAGAAGAACATGGTTCATCTACCAAAAGGGTTTTTGGATCGGACAAGAGAGCAAGGG 1239
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 937 AAGGAGAAGAACTTGGTTCATTTACCAAAAGGGTTTTTGGATAGGACAAGAGAGCAAGGG 996
Query 1240 ATAGTGGTTCCTTGGGCTCCACAAGTGGAACTGCTGAAACACGA-GGCAATGGGTGTGAA 1298
||||||||||| ||||| || |||||||||||||||||||| || ||||| |||||||
Sbjct 997 ATAGTGGTTCCATGGGCACCGCAAGTGGAACTGCTGAAACA-GAAGGCAACGGGTGTGTT 1055
Query 1299 TGTGACACATTGTGGATGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGAT 1358
|||||| ||||||||||||||||| |||||||||||||| |||| |||||| | ||||||
Sbjct 1056 TGTGACGCATTGTGGATGGAACTCGGTGTTGGAGAGTGTTTCGGGAGGTGTTCTGATGAT 1115
Query 1359 CGGCAGACCGATTTT-GGCGGATAATAGGCTCAACGGAAGAGCAGTGGAGGTTGTGTGGA 1417
|||| ||| |||| || |||| | || | |||||||||||||||||||||||||||
Sbjct 1116 TTGCAGGCCGTTTTTTGG-GGATCAGAGATTGAACGGAAGAGCAGTGGAGGTTGTGTGGG 1174
Query 1418 AGGTTGGAGTGATGATGGAT-AATGGAGTCTTCACGAAAGAAGGATTTGAGAAGTGTTTG 1476
|| ||||| || ||| || |||||||||||||| ||||| || |||||||||||||||
Sbjct 1175 AGATTGGAACGACGATT-ATCAATGGAGTCTTCACAAAAGATGGTTTTGAGAAGTGTTTG 1233
Query 1477 AAT-GATGTTTTTGTTCATGATGATGGTAAGACGATGAAG-GCTAATGCCAAGAAGCTTA 1534
|| || ||||| ||||| ||||||||||||| |||||| | |||||| ||||||||||
Sbjct 1234 GATCGA-GTTTTGGTTCAAGATGATGGTAAGAAGATGAAATG-TAATGCTAAGAAGCTTA 1291
Query 1535 AAGAAAAACTCCAAGAAGATTTCTCCAT-GAAAGGAAGCTCTT-TAGAGAATTTCAAAAT 1592
|||| | || |||| | |||| | ||||||||| || | | ||||||||| |
Sbjct 1292 AAGAGCTAGGACACGAAGCTGTCTCT-TCGAAAGGAAGTTCCTCT-GAGAATTTCGGAGG 1349
Query 1593 ATTGTTGGA 1601
|||||||||
Sbjct 1350 ATTGTTGGA 1358
> Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1
Length=1406
Score = 950 bits (514), Expect = 0.0
Identities = 1108/1383 (80%), Gaps = 88/1383 (6%)
Strand=Plus/Plus
Query 287 ACTCCCACGTGGCAGTTCTCGCGTTTTTCCCCGTT-GGC-GCTCATGCCGGTC---CTCT 341
|||||||||| ||||||||||| |||| || || ||| | ||| ||||| || |
Sbjct 15 ACTCCCACGTCGCAGTTCTCGC--TTTT--CCATTCGGCAG-TCA---CGGTCAGGCTAT 66
Query 342 CTTAGCCGTCACTCGCCGTCTCGCCGCCGCTTCTCCCTCCACCATCTTTTCTTTCTTCAA 401
| | || ||||| | ||| |||||| |||| ||||| |||||| |||| || ||||||||
Sbjct 67 CCTCGCTGTCACCCACCGCCTCGCCTCCGCATCTCCTTCCACCGTCTTCTCCTTCTTCAA 126
Query 402 CACCGCA-AGATCAAACGCGTCGTTGTTCTCCTCTGATCATCCCGAGAACA-TCAAGGTC 459
|||| || | ||| ||| || || |||||||| |||| ||| | ||||| || ||||
Sbjct 127 CACCTCACA-ATCCAACTTTTCATTATTCTCCTCCGATCGTCCGGCGAACATTC-GGGTC 184
Query 460 CACGACGTCTCTGACGGTGTTCCGGAGGGA-ACCATG--CT-CGGGAATCCACTGGAGAT 515
|| ||||| |||||||||||||| |||||| | | || || | | ||||||| ||||
Sbjct 185 CATGACGTGTCTGACGGTGTTCCCGAGGGATA-CGTGCTCTCCAGAAATCCACAGGAGGC 243
Query 516 GGTCGAGCTGTTTCTCGAAGCGGCTCC-ACGTATTTTCCGGAGCGAAATCGCGGCGGCAG 574
||||||||||||||| |||||||| || | | ||||| ||||| ||| |||||| ||| |
Sbjct 244 GGTCGAGCTGTTTCTTGAAGCGGCGCCGAAG-ATTTTTCGGAGAGAACTCGCGGTGGCGG 302
Query 575 AGA-TAGAAGTTGGAAAGAAAGTGACATGCATGCTAACAGATGCCTTCTTCTGGTTCGCA 633
||| | || ||| | | |||||||||||||||||| || ||||| ||| ||||||||||
Sbjct 303 AGACT-GAGGTTAGTAGGAAAGTGACATGCATGCTTACGGATGCGTTCATCTGGTTCGCT 361
Query 634 GCGGACATAGCGGCTGAGCTGAACGCGACTTGGGTTGCCTTCTGGGCCGGCGGAGC-AAA 692
||||| || ||||| ||| |||| | | | |||||||| |||||| || |||| | |||
Sbjct 362 GCGGATATGGCGGCGGAGATGAAAGTGTCGTGGGTTGCTTTCTGGACCTCCGGA-CAAAA 420
Query 693 CTCACTCTGTGCTCATCTCTACACTGATCTCATCAGAGAAACCATCGGTCTCAAAG-A-T 750
||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||| | |
Sbjct 421 CTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGGTGTCAAAGAAGT 480
Query 751 -G-T--GAGTATGGAAGAGACATTAGGGTTTATACCAGGAATGGAGAATTA-CAGAGTTA 805
| | | ||||||| || |||||||||||||| ||||||||||||| | |||||| |
Sbjct 481 AGATGGGCGTATGGAGGAAACATTAGGGTTTATTTCAGGAATGGAGAA-GATCAGAGTCA 539
Query 806 AAGATATACCA-GAGGAAGTTGTATTT-GAAGATTTGGACTCTGTTTTCCCAA--AGGCT 861
|||| |||||| |||| |||||| ||| | | |||| |||||||||||| ||| | ||
Sbjct 540 AAGACATACCAGGAGG-AGTTGTGTTTGGGA-ATTTAGACTCTGTTTTCTCAACTACGC- 596
Query 862 TTATACCAAATGAGTCTTGCTTTACCTCGTGCCTCTGCTGTTTTCATCAGTTCCTTTGAA 921
| |||||||| | |||||||| ||||| || |||| |||| ||| | ||||||||||
Sbjct 597 -TGCACCAAATGGGACTTGCTTTGCCTCGGGCGACTGCGGTTTACATGAATTCCTTTGAA 655
Query 922 GAGTTAGAACCTACATTGAACTAT-AACCTAAGATCCAAACTT-AAACGTT-TCTTGAAC 978
|| ||||| ||||||||| ||| | ||||| || || ||| || ||||||| | |||| |
Sbjct 656 GAATTAGATCCTACATTG-ACTGTAAACCTCAGGTCTAAA-TTCAAACGTTAT-TTGAGC 712
Query 979 ATCGCCCCTCTCA-CGTTATTATCTTCTACATCG----GAGAAAGA-GA-TGCGTGATCC 1031
|| | ||||| | |||| |||| |||| ||||| |||||| | | ||| ||||||
Sbjct 713 ATTGGTCCTCT-AGCGTTGTTATTTTCTCCATCGCAAAGAGAAACACCATTGCATGATCC 771
Query 1032 TCATGGCTGCTTTGCTTGGATGGGGAAGAGAT-CAGCTGCTTCTGTAGCGTACATTAG-C 1089
||| | |||||| |||||||| | |||| | | || || |||||||||||||||| | |
Sbjct 772 TCACGCCTGCTTAGCTTGGATCGAGAAGCGGTCCA-TTGATTCTGTAGCGTACATT-GCC 829
Query 1090 TTCGGCACCGTCATGGA-ACCTCCTCCTGAAGAGCTTGTGGCGATAGCACAAGGGTTGGA 1148
||||| | ||||| || ||| ||||||| |||||||||||| ||||||||||| |||||
Sbjct 830 TTCGGTAGAGTCAT-GACACCGCCTCCTGGAGAGCTTGTGGCAATAGCACAAGGATTGGA 888
Query 1149 ATCAAGCAAAGTGCCGTTTGTTTGGTCGCTGA-AGGAGAAGAACATGGTTCATCTACCAA 1207
||| || |||||||| |||||||||||||| | | |||| ||||||||||||| ||||||
Sbjct 889 ATCGAGTAAAGTGCCTTTTGTTTGGTCGCT-ACAAGAGATGAACATGGTTCATTTACCAA 947
Query 1208 AAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGTTCCTTGGGCTCCACAAGTGG 1267
|||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||
Sbjct 948 AAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATGGTGGTCCCATGGGCACCTCAAGTGG 1007
Query 1268 AACTGCTGAAAC-ACGAGGCAATGGGTGTGAATGTGACACATTGTGGATGGAACTCAGTG 1326
| ||||| |||| | || |||||||||||| |||| | ||| |||| ||||||||||||
Sbjct 1008 AGCTGCT-AAACCATGAAGCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTG 1066
Query 1327 TTGGAGAGTGTGTCGGCAGGTGTACCGATGATCGGCAGACCGATTTT-GGCGGATAAT-- 1383
|||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||
Sbjct 1067 TTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGCAGACCGATTTTCGG-GGACCATGC 1125
Query 1384 AGGCTCAACGGAAGAGCAGTGGAGGTTGTGTGGAAGGTTGGAGTGATGATGGAT-AATGG 1442
|| |||| | |||| | ||||||| ||||||| || ||||| ||| ||| || || |
Sbjct 1126 AG--TCAATGCAAGATCCGTGGAGGCTGTGTGGGAGATTGGAATGACGATT-ATTAAAGA 1182
Query 1443 A-GTCTTCACGAAAGAAGGATTTGAGAAGTGTTT-GAAT-GATGTTTTTGTTCATGATGA 1499
| || ||||| || || ||||||||| || |||| || | | ||||| ||||| |||||
Sbjct 1183 AAGT-TTCACCAAGGATGGATTTGAGGAGAGTTTAGA-TCGG-GTTTTGGTTCAAGATGA 1239
Query 1500 TGGTAAGACGATGAAGGCTAATGCCAAGAAGCTTAAAGAAAAA-CTCCAAGAAGATTTCT 1558
||| |||| |||||||| |||| | ||||||||||||||| | | | |||| | | |||
Sbjct 1240 TGGCAAGAAGATGAAGGTTAATTCTAAGAAGCTTAAAGAACTAGCAC-AAGACGCTGTCT 1298
Query 1559 CCATGAAAGGAAGCTC-TTTAGAGAATTTCAAAA-TATTGTTGGACGAAATTGTGAAAGT 1616
| | | |||||||||| |||| ||||||||||| | |||||||||||| ||||||||||
Sbjct 1299 CTACGGAAGGAAGCTCCTTTA-AGAATTTCAAAGGT-TTGTTGGACGAAGTTGTGAAAGT 1356
Query 1617 TTA 1619
|||
Sbjct 1357 TTA 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5