BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30550.1 Length=2047 Score E Sequences producing significant alignments: (Bits) Value Ahg336158 jgi|Araly1|336158|fgenesh1_pg.C_scaffold_1002723 1131 0.0 > Ahg336158 jgi|Araly1|336158|fgenesh1_pg.C_scaffold_1002723 Length=702 Score = 1131 bits (612), Expect = 0.0 Identities = 673/703 (96%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 685 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAA-GAGGTAAAATCAAC 743 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAAGGA-ATAAAATCAAC 59 Query 744 GATAGAGAAAGATAATGGTAGGAGACATAAAATCACTAAGTACTGGATTCAACGTTACGA 803 |||| ||||||| |||||| ||| ||||| ||||||||||||||||||||||| ||||| Sbjct 60 GATAAAGAAAGAAAATGGTTCGAGTCATAAGATCACTAAGTACTGGATTCAACGATACGA 119 Query 804 TCTCTTCTCAAGATATGACCAAGGTATCGAAATGGATGAAGAAGGATGGTACTCTGTGAC 863 ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 120 TCTCTTCTCAAGATACGACCAAGGTATCGAATTGGATGAGGAAGGATGGTACTCTGTGAC 179 Query 864 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATATCGTGGCAAAGTGGTGATTGATTG 923 ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| Sbjct 180 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATGTCGTGGTAAAGTGGTCATTGATTG 239 Query 924 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTTGCTAAAGTATGTTCTTCTGTTGTTGC 983 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 240 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTCGCTAAAGTATGTTCTTCTGTTGTTGC 299 Query 984 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCCATGGTTTATGGAGT 1043 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 300 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCAATGGTTTATGGAGT 359 Query 1044 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATACAATTAGCTCCTTCTCTCAAAGG 1103 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 360 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATCCAATTAGCTCCATCTCTTAAAGG 419 Query 1104 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATTTTGAGAGTTA 1163 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 420 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATGTTGAGAGTTA 479 Query 1164 CAATTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 1223 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TAAGTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 539 Query 1224 TACACCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCACAAGTGGAAGAACT 1283 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 TACGCCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCGCAAGTGGAAGAACT 599 Query 1284 AGCTTGGCTCTCGTCGCCTCCGTTAAATCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 1343 ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 600 AGCTTGGCTCTCGTCCCCTCCGCTAACTCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 659 Query 1344 AATGAAAGCTGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 1386 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 660 AATGAAAGCCGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76980385145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5