BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30590.1
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139 2543 0.0
Ahg482439 jgi|Araly1|482439|fgenesh2_kg.4__1499__AT2G34750.1 1068 0.0
Ahg321615 jgi|Araly1|321615|fgenesh1_pm.C_scaffold_4001672 920 0.0
Ahg934507 jgi|Araly1|934507|scaffold_402495.1 898 0.0
Ahg935382 jgi|Araly1|935382|scaffold_403370.1 124 2e-27
> Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139
Length=1833
Score = 2543 bits (1377), Expect = 0.0
Identities = 1696/1845 (92%), Gaps = 42/1845 (2%)
Strand=Plus/Plus
Query 307 ATGGGAGCAGAAGAATTTCCGAGTGTTCCGTTCAACTCAAATGCAATGGACAACGCTGAA 366
||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAGCAGAAGAAGTTCCGAGTGTTCCTTTCAGCTCAAATGCAATGGACAACGCTGAT 60
Query 367 TATACCGACACAGATTTGGTGTTTGCCGTTAGAAAGGCCCTTGCATCTGTCCAAAATGGA 426
|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATAGCGACACAGAATTGGTGCATGCCGTTAGAAAGGCCCTTGCATCTGTCCAAAATGGG 120
Query 427 GATACCGACGATTATAGTCAGCTTAAAACAGTGATGTGCCTTACAGAAGACGCTGATTTC 486
|||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 121 GATACCGACGATTATAGTCAGCTTAAAACAGTGATGTGCCATAAAGACTATTCTGATTTC 180
Query 487 GATGCAGTGGCACAGCT-TGAGACAGTCTTGAAAAGTCTATCAGTTTCCGTTGCTTGGAT 545
|||||||||||| | || |||||||||||||| || |||||||||||| |||||||| ||
Sbjct 181 GATGCAGTGGCA-AACTATGAGACAGTCTTGAGAATTCTATCAGTTTCTGTTGCTTGCAT 239
Query 546 AGATTTAGTTCATCATAAAGATCTTCTT-G-A--A-----GCTATGAGCTTGTGGTATCA 596
| || ||||||| ||| ||||||||||| | | | | ||||||||||||| |||
Sbjct 240 AAATGTAGTTCACCATGAAGATCTTCTTAGAACTATTTTTGGGATGAGCTTGTGGTTTCA 299
Query 597 TAGTCACAGACCTAGTGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTAC 656
| | | ||||| ||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 -A---A-A-ACCTAATGTCATGGATGCATCGGTGGGCCTAATCATATCACTGGCCGCTAC 353
Query 657 TAGTGGAAAATATCTGGATCCTTGTTTGAATATGCTCGTAAGAAATTTCAGT-CAACCTA 715
|||||||||||| |||||||||||||||||||||||| |||| ||||||| | |||||||
Sbjct 354 TAGTGGAAAATACCTGGATCCTTGTTTGAATATGCTCATAAGTAATTTCA-TACAACCTA 412
Query 716 CTTTTAAGCATAAAGTTTCACAAACCCAATTAGTCAAAAAGATGCAGGAAGTTCATCCAC 775
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 413 CTTTTAAGCATGAAGTTTCACAAACCCAGTTAGTCAAAAAGAAGCAGGAAGTTCTTCCAC 472
Query 776 GGGTGCATGCAGCCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAATTTAG 835
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 473 GGGTGCATGTAGCCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTCGAAATTAG 532
Query 836 TGTCTATACTTGCGCAGAACATGCGTAAAATTGACAAAAAGGACCCTTCTATAGTGACAT 895
|| ||||||||||||||||||||| || ||| || |||||| ||||||| |||||||||
Sbjct 533 TGCCTATACTTGCGCAGAACATGCCTAGTATTTACGAAAAGGGCCCTTCTGTAGTGACAT 592
Query 896 ATGTGGATAACCTGTTGAGGTTGGAGAATAGCTCAATCGGAGAAGTTGTTGGCAGCGTGA 955
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct 593 ATGTGGATAACCTGTTGAAGTTGGAGAATAGCTCAATCGGAAAAGTTGTTGGCAGTGTGA 652
Query 956 TTCTTATGATGGTAATGGAGAGGATGCTAGATTTAGATTTGGTAA---G-TG-GATG--- 1007
|||| |||||||| ||||||||||||| |||||| ||||||| || | || ||||
Sbjct 653 TTCTCATGATGGTGATGGAGAGGATGCGAGATTTGGATTTGGAAATTGGATGCGATGATA 712
Query 1008 ---T----GATGACTCTAATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAA 1060
| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTCTCCAAGATGACTCTAATAGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAA 772
Query 1061 GCACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTG 1120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 773 GCACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACATCAGATG 832
Query 1121 GAAATGTAGTCTCTGAACTGTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAAT 1180
||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| |||
Sbjct 833 GAAATGTGGTCTCTGAGCTGTTGGACAAATTGATGGTCCTAACTTTTGATCATCTTGAAA 892
Query 1181 CCTGTCAAAACTCTGATCGTTTGGATGAGGTATTTGAAATCCTCTTTAAGTCGTTCGAGA 1240
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 893 CCTGTCAAAACTCTGGTCGTTTGGATGAGGTATTTGAAATCCTCTTTCAGTCGTTTGAGA 952
Query 1241 ACTATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCT 1300
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 953 ATTATATTCTGAACACATACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCT 1012
Query 1301 CACTAGATCCTGAAAATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCT 1360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CACTAGATCCTGAATATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCT 1072
Query 1361 CCAGCAACACATGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTATTTGT 1420
|||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1073 CCAGAAACAAACCTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGT 1132
Query 1421 CTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACG 1192
Query 1481 AGTGTGCGGAATATTGCGGAACATGCAATGATGATGTGAAGCCAGAAGCACATCAAGTGT 1540
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATTGTGCGGAATATTGCAGAACATGCAATGATGATGTGAAGCCAGAAGCACATCAAGTGT 1252
Query 1541 TCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCC-GAATGAGATCCATAGTG 1599
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1253 TCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCAGA-TGAGATCCATACTG 1311
Query 1600 GAGATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCACAAACTA 1659
|| |||||||||||||| | |||| | | ||| |||||||||||||||||||||||||||
Sbjct 1312 GACATTCCTCGCTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTATCTCACAAACTA 1371
Query 1660 AACCCACT-ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC 1718
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AACCCACTGA-TGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC 1430
Query 1719 TGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGAGCT 1778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1431 TGGTGGTCTGTTCATTGTCTCAGAAGCCTTCATTTTCGATGACCTACACGAGTCTGAGCT 1490
Query 1779 CTCTCGTGCTTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTT 1838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CTCTTGTGCTTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTT 1550
Query 1839 GTTGAAAATGTCTAGCAGCTACATCTCCCCGAACTTCAACTTCTGGTCAATGGTGAAAAC 1898
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1551 GTTGAAAATGTCTAGCAGCTATATCTCCCCGAACTTCAACTTCTGGTTAATGGAGAAAAC 1610
Query 1899 GACTTATGGAG-AAGATGGTGACGAAGAGCTTTGTGATGAGGTCATAGTGAATGGAGATG 1957
|||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1611 GACTTATG-AGGAAGATGATGACGATGAGCTTTGTGATGAGGTCATAGTGAATGGAGATG 1669
Query 1958 CAGACAGTGCGGAGGAACC-TGACGATGACGTTGAACTTGATAGTGAGATGAACACGATG 2016
||||||||| |||||| | |||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1670 CAGACAGTGAGGAGGA-CTGTGACGATGACGTGGAACTTGATAGCGAGATGAATAAGATG 1728
Query 2017 TCTACAACTCCGAAACACTCTTTCATGCGAGAAACAGAGAGGCTCTTGAAGATGCCTTCA 2076
||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1729 TCTGTAACTCCGAAACACTCTTTCATGCAAGAAACGGAGAGGCTCTTGAAGATGCCTTCA 1788
Query 2077 AGAATCAGACCATCCACTAGTCCTCCTGAATCCTTCTTAATCTAA 2121
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 AGAATCAGACCATCCACTAGTCCTCCTGAATCCTTCTTAATCTAA 1833
> Ahg482439 jgi|Araly1|482439|fgenesh2_kg.4__1499__AT2G34750.1
Length=2134
Score = 1068 bits (578), Expect = 0.0
Identities = 1440/1838 (78%), Gaps = 131/1838 (7%)
Strand=Plus/Plus
Query 353 TGGACAACGCTGAATATA-CCGACACAGATTTGGTGTTTG-CCGTTAGAAAGGCCCTTGC 410
||||||||| || || || | ||||||||||||||| | |||| |||||||||||| |
Sbjct 220 TGGACAACGTTG-ATTTATCTGACACAGATTTGGTG-CAGACCGTGAGAAAGGCCCTTAC 277
Query 411 ATCTGTCCAAAA-TGGAGA-TACCGACGATTATAGTCAGCTTAAAACAGTGATGT-GC-C 466
|||||| ||||| ||| || | | ||| ||| ||| ||||| ||| || | |
Sbjct 278 ATCTGT-CAAAACTGGGGACT-CAGACCTTTACAGTGAGCTTGTTGGAGTTAT-TAACAA 334
Query 467 TTACA--GAAGACGCT---GATTTCGATGCAGTGGCACAGCTTGAGACAGTCTTGAAAAG 521
||| |||| | ||| |||||||||||| |||||||||||||||||| || |
Sbjct 335 GGACATCAAAGAATTTAGGGATCCCGATGCAGTGGCGCAGCTTGAGACAGTCTTG-AAGG 393
Query 522 -TCTATCAGTTTCCGTTGCTTGGATAGATTTAGTTCATCAT-AAAGATCTTCTTGAAGCT 579
||| |||| || || ||||| |||||| | ||||| ||| ||| | |||||| ||
Sbjct 394 CTCTGTCAGGCTCTGTGGCTTGCATAGATATCGTTCACCATCAAA-AGCTTCTT---TCT 449
Query 580 ATGAGC-TTGTGGTAT--CATAGT-----CACAGACCTAG-TGTAATGGATGCATTGGTG 630
| | | || ||| || || || ||||||||| | ||| |||||||||||||||
Sbjct 450 -TCA-CTTTTTGGAATGAAATTGTGGGACCACAGACCT-GTTGTCATGGATGCATTGGTG 506
Query 631 GACCTAATCATATCACTGGCCGCT-ACTAGTGGAAAATATCTGGATCCTTGTTTGAATAT 689
||||| ||||||||||||| | | ||| ||||||| |||||||| |||||| |||||||
Sbjct 507 AACCTAGTCATATCACTGGCTG-TCACTCGTGGAAAGTATCTGGACCCTTGTCTGAATAT 565
Query 690 GCTCGTAAGAAATTTCAG-T-CAACCTACTT---T--TAAGCATAAAGTTTCACAAACCC 742
||| ||||| || ||| | | | ||| ||| | ||| |||| |||| | | |||
Sbjct 566 GCTTGTAAGCAACTTC-GTTGC-GCCTCCTTCGGTAGTAA--ATAATCTTTCGC-ACCCC 620
Query 743 AAT-TAGTCAAA-AAGATGCA-GGAAGTTCATCCACGGGTGCATGCAGCCCTTCACAAGA 799
| || | ||| |||| | | ||||||| | | |||||||||||||| |||| || |
Sbjct 621 CGTGTACT-AAACAAGAAG-ATAGAAGTTCTTTCTCGGGTGCATGCAGCGCTTCTGAAAA 678
Query 800 TTTCTTA-TTTAATTCCTCTTGCTCCCTGGAA-TTTAGTGTCTATACT-TGCGCA-GAAC 855
| || || ||| |||||||| |||||| || |||||| | || || | || |||
Sbjct 679 TATC-TATTTTGGTTCCTCTTACTCCCT-CAAGATTAGTGCCAATGCTCT-TTCAGGAA- 734
Query 856 ATGCGTAAAATTGACAAAAAGGACCCTTCTATAGTGACATATGTGGATAACCTGTTGAGG 915
|||| |||| ||||||||||||| ||| ||||||| ||||||||| | | | || | |
Sbjct 735 ATGCCCAAAAAAGACAAAAAGGACCATTCGATAGTGATATATGTGGAGAGCTTATTAAAG 794
Query 916 TTGGAGAATAGCTCAATCGGAG-AAGTTGTTGGCAGCGTGATTCTT-ATGATGGTAATGG 973
|||||||||||| ||||||| | |||||| ||||||| |||||||| || |||| ||||
Sbjct 795 TTGGAGAATAGCCCAATCGG-GCAAGTTGGTGGCAGCATGATTCTTGGTG-TGGTGATGG 852
Query 974 AGAGGATGCTAGATTTAGATTT-G-G-TAAG-T-GGATG----T------GATGACTCTA 1018
||||| ||| |||||| ||||| | | | | | ||||| | ||||||||||
Sbjct 853 AGAGGCTGCGAGATTTGGATTTAGAGATTGGATGGGATGATATTCCACAAGATGACTCTA 912
Query 1019 ATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCACTATGAATGAAGGAG 1078
| |||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||
Sbjct 913 GTAGAGGCATGTTTGATATGGAACTTGAAGACGCAGTTGAAGGCTTTATAAATGAAGGAG 972
Query 1079 ACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGAAATGTAGTCTCTGAAC 1138
||||| |||| ||||| ||||||| || || | |||| ||||| |||| ||||| ||
Sbjct 973 ACGAGCTTCCTGTGGGACCTCTAAAGCAGGATTCATCAGATGGAAGTGTATTCTCT-AAG 1031
Query 1139 T-GTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAATCCTGTCAAAACTC-TGA 1196
| ||||||||||||||||||| || |||| | ||||| |||||||||||||| | ||
Sbjct 1032 TTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTTGAATCCTGTCAAAA-TGATGG 1090
Query 1197 TCGTTTGGATGAGGTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTAT-ATTCTGAACA 1255
|||||||||| |||| |||||||||||||| |||| || ||||||| | |||||||| |
Sbjct 1091 TCGTTTGGATCAGGTGTTTGAAATCCTCTTGGAGTCATTTGAGAACT-TCATTCTGAATA 1149
Query 1256 CATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCTCACTAGATCCTGAAA 1315
|||||||| ||||||| | |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1150 CATACAAATCAAAATTCACCCAGTTTCTGATGTTCTATGCCTGCTCACTGGATCCTGAAA 1209
Query 1316 ATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCTCCAGCAACA--CATG 1373
|||||||||||| |||||| ||||||||| |||| || | |||||||||||||| |||
Sbjct 1210 ATTGTGGTGTGAAATTTGCAAGTAAGCTGGTGGAGATTTTTCTCTCCAGCAACAAGCATC 1269
Query 1374 TCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTAT-TTGTCTCGTGGAAAGT 1432
| | || ||||| |||||||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct 1270 TAG-CT-ACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCT-TCTTGGCTCGTGGAAAGT 1326
Query 1433 TTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGAGTGTGCGGAAT 1492
||||||| | ||| ||||||||||||||||||||||| ||| | || ||||||| || |
Sbjct 1327 TTTTGCCGGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATAGATGAGTGTGTGGGTT 1386
Query 1493 ATTGCGGAACATGCAATGATGATGTGAAGCCAGAAGCACATCA-AGTGTTCTAT-TCTGG 1550
| ||| |||| |||||||||||| | | ||| ||||||||||| | | |||| | || ||
Sbjct 1387 ACTGCAGAACTTGCAATGATGATATTAGGCCTGAAGCACATCAGATT-TTCT-TCTCCGG 1444
Query 1551 ATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAGTGGA-GATTCCTC 1609
||||||||||||| |||||||||| |||||||| ||||| ||||| |||| | ||||||
Sbjct 1445 ATGTCAGGCAATCATGTATGTGCTCTGCTTCCGGATGAGGTCCATCCTGGATG-TTCCTC 1503
Query 1610 GCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTA-TCTCACAAACTAAACCCACT- 1667
|| ||| || ||| ||| | ||||||||||||||||| | ||||| ||||||||| |
Sbjct 1504 GCCTTCGGTCCCAGCTTACACCATTGGAGTCAATTTTAATG-CACAAGCTAAACCCATTG 1562
Query 1668 ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGCTGGTGGTCT 1727
| ||| || |||||||| |||||| | |||||||||| |||||| ||||| ||||||||
Sbjct 1563 AG-GGTATGCCTTCCATCAGTAGTTGCGGAGTTCCTTAGACAAGCTAAAGCAGGTGGTCT 1621
Query 1728 GTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGAGCTCTCTCGTGC 1787
|||||| |||||||| || ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1622 GTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAGCTCTCCCGTGC 1681
Query 1788 TTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTTGTTGAAAAT 1847
|||||| || | ||| |||||||| || |||||||| |||||||| |||||| | ||||
Sbjct 1682 TTTTGGCGGGTGTGAGAGGCTTGATACGTTCTTCCCATTTGACCCTTGCTTGCTCAAAAC 1741
Query 1848 GTCTAGCAGCTACATCTCCCCGAACTTCAACTTCTGGTCAATGGTGAAAACGACTTATGG 1907
|| | ||||| ||||||| ||| |||| || |||||||||||||| |||| ||||
Sbjct 1742 CTCAAACAGCTTTATCTCCCGGAATTTCATCTACTGGTCAATGGTGAGTGCGACCTATG- 1800
Query 1908 A-GAAGATGGTGACGAAGA-GCTT-TG-TGATGAGGTCATAGTGAATGGAGATGCAG-AC 1962
| ||| ||| || || || | || || || |||||| || ||||| ||||||| || ||
Sbjct 1801 ATGAATATGAAGAAGATGATGATTATGATGCTGAGGTGATCGTGAACGGAGATG-AGGAC 1859
Query 1963 AGTG-CGGAGGAACCTGACGATGACGTTGAACTTGA-TAGTGAGATGAACACGATGTCTA 2020
|||| || ||| ||||| | | | || ||||| || || |||||| ||||| |
Sbjct 1860 AGTGACGAAGGG----GACGAGG-C-T-GATCTTGACTA-TGCCCTGAACAAAATGTCCA 1911
Query 2021 CAACTCCGAAACACTCTTTCATG--C--GA-G-AAACAGAGAGGCTCTTGAAGA-TGCCT 2073
||| || || |||||||||| | | || | ||| ||| || ||||| |||| |||||
Sbjct 1912 TAACGCCTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTCTT-AAGAATGCCT 1970
Query 2074 TCAAGAATCAGACCATCCACTAGTCCTCCTGAATCCTT 2111
|| ||||||||||| |||||||||||| ||||||||
Sbjct 1971 TCCAGAATCAGACCCTCCACTAGTCCT---GAATCCTT 2005
> Ahg321615 jgi|Araly1|321615|fgenesh1_pm.C_scaffold_4001672
Length=1755
Score = 920 bits (498), Expect = 0.0
Identities = 995/1221 (81%), Gaps = 90/1221 (7%)
Strand=Plus/Plus
Query 612 TGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTACTAGTGGAAAATATCT 671
||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 324 TGTAATGTATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGTATCT 383
Query 672 GGATC-CTTGTTTGAATATGCTCGTAAGAAATTTCAGTCAACCTACTTTTAAGCATAAAG 730
|||| ||||||| ||||||||||| | || | || ||| || || ||
Sbjct 384 -GATCTCTTGTTTAAATATGCTCGT-----A--TC--T-AATTTAC-GTT-CGC---AA- 426
Query 731 TTTCACAAACCCAATTAGTCAA-AAAGATGCAGGAAGTTC-ATCCACGGGTGCATGCAGC 788
| || || | | | ||| || || ||||||||||| ||| |||||||| |||||
Sbjct 427 CCCCGCATACTC-A--A--CAATAAGGA-GCAGGAAGTTCTTTCC-CGGGTGCACGCAGC 479
Query 789 CCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAAT-TTAGTGTCTATACTTG 847
|||||||| ||||| |||||| |||| |||||||||| ||| ||| || | ||||| |
Sbjct 480 TCTTCACAAAATTTCGTATTTAGTTCCCCTTGCTCCCT-CAATATTACTGCCCATACTCG 538
Query 848 CGCA-GAACATGCGTAAAATTGAC-AAAAAGGACCCTTC-TATAGTGACATATGTGGATA 904
| || | | |||| || | ||| | ||| || || || | ||||| |||||||||| |
Sbjct 539 CCCAGGGA-ATGCCTAGCGTAGACGACAAA-GA-CCATCTTGTAGTGCCATATGTGGAGA 595
Query 905 ACCTGTTGAGGTTGGAGAATAGCTC-A--ATCGGAGAAGTTGTTGGCAGCGTGATTCTTA 961
|| |||||| ||||||||| ||||| | |||||| |||||||||||| || ||||||||
Sbjct 596 ACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCAACGGGATTCTTA 655
Query 962 TGATGGTAATGGAGAGGATGCTAGATTTAGATTTG--G--TAAGT-GGATG------T-- 1008
| | |||||||||||| ||| |||| | |||||| | | || ||||| |
Sbjct 656 GGGTTGTAATGGAGAGGTTGCGAGATCTCGATTTGAAGATTGGGTGGGATGATATACTCC 715
Query 1009 --GATGACTCTA--ATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCAC 1064
|||||||| | || || ||||||||||||||||||||| |||||||||| ||||
Sbjct 716 AAGATGACTCCACCAT--AGCCATGTTTGATATGGAACTTGACCTTGCAGTTGAAGGCAC 773
Query 1065 TATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGAAA 1124
|| ||||||||||| |||||| |||| || ||||||| | || | | ||||||
Sbjct 774 TACCAATGAAGGAGAGGAGTTTTCAGTTCGGTCTCTAAATC--AA-A----A--TGGAAA 824
Query 1125 TGTAGTCTCTGAACT-GTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAATCCT 1183
|||||||||| || | ||||||| | ||||||||||||| |||||||||||| |||| ||
Sbjct 825 TGTAGTCTCT-AAATCGTTGGACGATTTGATGGTCCTATCTTTTCATCATCTTGAATTCT 883
Query 1184 GTCAAAACT-CTGATCGTTTGGATGAGGTATTTG-AAATCCTCTTTAAGTCGTTCGAGAA 1241
| ||| | | ||| |||| |||||||||| |||| |||| || || |||||| |||||
Sbjct 884 GCCAAGA-TGCTGGTCGTCTGGATGAGGTGTTTGAAAAT-CTGTTCGTGTCGTTTGAGAA 941
Query 1242 C-TATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCT 1300
| || ||||||||||| | ||||||||| |||||||||| |||||||||||||| ||||
Sbjct 942 CTTA-ATTCTGAACACGCAAAAAACAAAAATTTCACAGTTCCTGATGTTCTATGCGTGCT 1000
Query 1301 CACTAGATCCTGAAAA-TTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTC 1359
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1001 CACTAGATCCT-AAAAGTTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTC 1059
Query 1360 TCCAGCAACACATGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTATTTG 1419
|||||||||| | || | ||||||||| || |||||||||||||||||||||||| |||
Sbjct 1060 TCCAGCAACAAACATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTG 1119
Query 1420 TCTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAC 1479
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1120 GCTCGTGCAAAGTTTTTGCCTACTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAG 1179
Query 1480 GAGTGTGCGGAATATTGCGGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCAAG- 1537
|| |||||||| || ||| |||||||||||||||||| | | ||| |||| ||||||||
Sbjct 1180 GATTGTGCGGATTACTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGAACATCAAGA 1238
Query 1538 TGTTCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAG 1597
| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1239 T-TTTTATTCAGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCAATCC 1297
Query 1598 TGGA-GATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTT-ATCTCACAA 1655
| | | |||||||||| | ||||||| ||| | |||||||||| |||| |||||||||
Sbjct 1298 TAGCTG-TTCCTCGCTTCCTATCGCAGCTTACACCATTGGAGTCGGTTTTTATCTCACAA 1356
Query 1656 ACTAAACCCACTACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAA 1715
|||| |||| | |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1357 ACTAGACCC------G-TGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTAAACAAGCCAA 1409
Query 1716 AGCTGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGA 1775
|||||||||| || |||||||||| ||| |||||||||| |||||||||| |||||||||
Sbjct 1410 AGCTGGTGGTATGATCATTGTCTCGGAAGCCTTCATTTTTGATGACCTACCCGAGTCTGA 1469
Query 1776 GCTCTCTCGTGCTTTTGGTGG 1796
|||||||||||||||||||||
Sbjct 1470 GCTCTCTCGTGCTTTTGGTGG 1490
> Ahg934507 jgi|Araly1|934507|scaffold_402495.1
Length=1525
Score = 898 bits (486), Expect = 0.0
Identities = 995/1228 (81%), Gaps = 86/1228 (7%)
Strand=Plus/Plus
Query 612 TGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTACTAGTGGAAAATATCT 671
||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 221 TGTAATGTATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGCATCT 280
Query 672 GGATC-CTTGTTTGAATATGCTCGTAAGAAATTTCAGTCAACCTACTTTTAAGCATAAAG 730
|| | ||||||| ||||||||| | | || | || ||| ||| || ||
Sbjct 281 -GAGCTCTTGTTTAAATATGCTC----G---TCTC--T-AATTTAC-TTT-CGC---AA- 323
Query 731 TTTCACAAACC-CA-ATTAGTCAAAAAGATGCAGGAAGTTC-ATCCACGGGTGCATGCAG 787
| | || || | | | ||| ||||||| |||| ||| ||| |||||||| ||||
Sbjct 324 ---C-C---CCGCATACTCGACAATAAGATGCTGGAACTTCTTTCC-CGGGTGCACGCAG 375
Query 788 CCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAAT-TTAGTGTCTATACTT 846
| |||||||||||||||| |||| |||| |||||||||| | || || || | |||||
Sbjct 376 CTCTTCACAAGATTTCTTTTTTAGTTCCCCTTGCTCCCTCG-ATACTACTGCCCATACTC 434
Query 847 GCGCAGAACATGCGTAAAATTGAC-AAAAAGGACC-C-TT---C-TATAGTGACATATGT 899
|| |||| ||| || | || | ||| |||| | || | | ||||| |||| ||
Sbjct 435 GCCCAGAGTTTGCCTAGCGTACACGACAAA-GACCGCTTTCAGCTTGTAGTGCCATACGT 493
Query 900 GGATAACCTGTTG-AGGTTGGAGAATAGCTCAATCGGAGAAGTTGTTGGCAGCGTGATTC 958
||| ||| ||||| | |||||| || |||||||||||| ||||| |||||| ||| ||||
Sbjct 494 GGAGAACTTGTTGCA-GTTGGAAAACAGCTCAATCGGAAAAGTTTTTGGCAACGTCATTC 552
Query 959 TTATGATGGTAATGGAGAGGATGCTAGATTTAGATTTGGTA-AGTGGATGTGATG--A-- 1013
||| | |||||||||||||| |||||||| | ||||||| | | ||| || |||| |
Sbjct 553 TTAGGGTGGTAATGGAGAGGTTGCTAGATCTCGATTTGG-AGATTGGGTGGGATGATATT 611
Query 1014 CT-CTA-ATG-----G--A--GGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGC 1062
|| | | ||| | | | ||||||||||||||||||||| |||||||||| ||
Sbjct 612 CTCCAAGATGACTCCGCCATTGCCATGTTTGATATGGAACTTGACCTTGCAGTTGAAGGC 671
Query 1063 ACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGA 1122
|||| ||||||||||| ||||||||||| || ||||||| | || | | ||||
Sbjct 672 ACTACCAATGAAGGAGAGGAGTTTCCAGTTCGGTCTCTAAATC--AA-A----A--TGGA 722
Query 1123 AATGTAGTCTCTGAAC-TGTTGGACAAATTGATGGTCCTATTTTTTCATCATC-TAGAAT 1180
|||| ||||||| || |||||||| | || |||||||||| |||| |||||| || |||
Sbjct 723 AATGCCGTCTCTG-ACTTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTTA-AAT 780
Query 1181 CCTGTCAAAACTCTGATCGTTTGGATGAGGTATTTG-AAATCCTCTTTAAGTCGTTCGAG 1239
|||||||| | |||| |||| |||||||||| |||| |||| || || ||||||| | |
Sbjct 781 CCTGTCAAGATTCTGGTCGTCTGGATGAGGTGTTTGAAAAT-CTGTTCGAGTCGTTTGTG 839
Query 1240 AAC-TATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATG 1298
||| || ||||||||| | | ||||||||| |||||||||| |||||||||||||| ||
Sbjct 840 AACTTA-ATTCTGAACGCGCAAAAAACAAAAATTTCACAGTTCCTGATGTTCTATGCGTG 898
Query 1299 CTCACTAGATCCTGAAAATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCT 1358
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 899 CTCACTAGATCCTGAAAATTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCT 958
Query 1359 CTCCAGCAAC-AC-A-TGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTA 1415
| ||||||| || | || | ||||||||| || ||||||||||||||||||||||||
Sbjct 959 CAACAGCAACAACAACAATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTA 1018
Query 1416 TTTGTCTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGT 1475
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTGGCTCGTGCAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGT 1078
Query 1476 GGACGAGTGTGCGGAATATTGCGGAACATGCAATGATGATG-TGAAGCCAGAAGCACATC 1534
||| ||||||||||| || ||| |||||||||||||||||| | | ||| |||| |||||
Sbjct 1079 GGATGAGTGTGCGGATTACTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGAACATC 1137
Query 1535 AAGTGTTCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCA 1594
|||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1138 AAGTTTTCTATTCAGGATGTCAGGCAATCTTGTATTTGTTATGCTTCCGAATGAGATCAA 1197
Query 1595 TAGTGGA-GATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCAC 1653
| | || | |||||||||| | ||||||| ||| | |||||||||| |||||||||||
Sbjct 1198 TCCTAGATG-TTCCTCGCTTCCGATCGCAGATTACACCATTGGAGTCGGTTTTATCTCAC 1256
Query 1654 AAACTAAACCCACT-ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGC 1712
|||||| |||| | | |||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1257 AAACTAGACCCGTTGAA-GGTGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTTATCAAGC 1315
Query 1713 CAAAGCTGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACAC-GAGT 1771
|||||| |||||||||||||||||||| || |||||||||| |||||||||| | ||||
Sbjct 1316 CAAAGCCGGTGGTCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTAC-CTGAGT 1374
Query 1772 CTGAGCTCTCTCGTGCTTTTGGTGGCTT 1799
||||||| ||||||||||| ||||||||
Sbjct 1375 CTGAGCTTTCTCGTGCTTTAGGTGGCTT 1402
> Ahg935382 jgi|Araly1|935382|scaffold_403370.1
Length=590
Score = 124 bits (67), Expect = 2e-27
Identities = 96/110 (87%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 1556 AGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAGTGGA-GATTCCTCGCTTT 1614
||||||||||||||||||||||||||||| ||||||| || | || | | ||||||||
Sbjct 174 AGGCAATCTTGTATGTGCTATGCTTCCGAGTGAGATCAATCCTAGATGCT-CCTCGCTTC 232
Query 1615 CAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCACAAACTAAACCC 1664
|||||| || ||| | ||||||||||| ||||||||||||||||||||||
Sbjct 233 CAATCGTAGCTTACACCATTGGAGTCAGTTTTATCTCACAAACTAAACCC 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5