BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30610.1
Length=3021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922127 jgi|Araly1|922127|scaffold_103408.1 2198 0.0
> Ahg922127 jgi|Araly1|922127|scaffold_103408.1
Length=2785
Score = 2198 bits (1190), Expect = 0.0
Identities = 1337/1407 (95%), Gaps = 14/1407 (1%)
Strand=Plus/Plus
Query 753 TGTGAAATGGAGTAATAGTGGTGAATCTTCAGTGACTATGCCTA-AAGATGAGAGCTTTA 811
||||||||||||||| |||||||| |||||||||||| || | | |||||||||||||||
Sbjct 557 TGTGAAATGGAGTAAGAGTGGTGAGTCTTCAGTGACTGTG-CAAGAAGATGAGAGCTTTA 615
Query 812 GGAGAAGATACTCTAAGCAGGAGCATCACCGTTCCTCTGATACATCCAGAGGGATTGCAA 871
||||||| ||||| |||||||||||||||||||||||||| | | | | | | |
Sbjct 616 GGAGAAGGTACTCGAAGCAGGAGCATCACCGTTCCTCTGA-A-A--C------A-T-CGA 663
Query 872 GAGGTTCAAAAGGTGATGAATTGGAGCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAG 931
||||||| | || |||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 664 GAGGTTCCACAGTTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGATTTCCCAGAATAG 723
Query 932 CCAAAGATGTAAGATGGAGTAAGAGTGATGAATCTTTAGTGCCTGTGTCAGAAGATGAGA 991
||||||||| ||||||||||||||||| ||||||||||||| || |||||||| ||||||
Sbjct 724 CCAAAGATGCAAGATGGAGTAAGAGTGGTGAATCTTTAGTGACTTTGTCAGAATATGAGA 783
Query 992 GTTTCAGGAGAGGGAATCCGAAGCAGGAGATGGTGAGGTATCAGCGTGTCTCTGATACAT 1051
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 784 GTTTCAGGAGACGGAATCCCAAGCAGGAGATGGTGAGGTATCAGCGTGCCTCTGACACAC 843
Query 1052 CGAGAGGGATTGAGAGAGGTTCCAAAGGAGATGGATTGGATCTTCTTGCTGAAGAAAGGC 1111
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 844 CGAGAGGGATTGAGAGAGGTTCCAAAGGAAATGGATTGGATCTCCTTGCTGAAGAAAGGC 903
Query 1112 GGATTGAGAGATTAGCCAATGAGAGGCATGAGATAAGAAGTAGCAAATTGAGTGGAACCA 1171
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 904 GAATTGAGAGATTAGCCAACGAGAGGCATGAGATAAGAAGTAGCAAATTGAGTGGAACCG 963
Query 1172 GGAGAATTGGTGCTAAGAGAAatgatgatgatgatgatAGCTTGTTTGCCATGGAAACTC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GGAGAATTGGTGCTAAGAGAAATGATGATGATGATGATAGCTTGTTTGCCATGGAAACTC 1023
Query 1232 CTGCCTTTAGGTTTTCTGATGAGTCCAGTGACATAGTGGACAAGCCAGCTACTTCACGAG 1291
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTGCCTTTAGGTTTTCCGATGAGTCCAGTGACATAGTGGACAAGCCAGCTACTTCACGAG 1083
Query 1292 TCGAAATGGAAGACAGAATCGAGAAGTTAGCAAAAGTGTTGAATGGTGCAGACATCAATA 1351
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1084 TCGAAATGGAAGATAGAATCGAAAAGTTAGCAAAAGTGTTGAATGGTGCAGACATCAATA 1143
Query 1352 TGCCTGAGTGGCAGTTTTCCAAGGCGATCAGGAGTGCAAAAATCAGATATACGGATTACA 1411
||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||
Sbjct 1144 TGCCTGAGTGGCAGTTTTCCAAGGCGATCCGAAGTGCAAAAATCAGATACACAGATTACA 1203
Query 1412 CAGTAATGAGACTGATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAG 1471
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CTGTAATGAGACTGATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAG 1263
Query 1472 TCATTGAGTGGCTTCAAAGGCAAGACCGTTACAAATCTAACAAGATAAGAATCATCTATA 1531
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1264 TCATCGAGTGGCTTCAAAGGCAAGACCGTTACAAATCGAACAAGCTAAGAATCATCTATA 1323
Query 1532 CAACTGCACTAAATGTTCTTGGTAAATCAAGGAGGCCTGTGGAAGCTCTCAATGTATTCC 1591
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1324 CAACTGCACTAAACGTTCTTGGTAAATCAAGGAGGCCTGTGGAAGCCCTCAATGTATTCC 1383
Query 1592 ACGCTATGCTGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACGCTATGCTGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 1443
Query 1652 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGAGGT 1711
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 1444 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCCATGTGATTGATACAATGCGAT 1503
Query 1712 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 1563
Query 1772 CAGATGTTGTTGTTTACAATGCGGTGCTCAACGCATGTGTTCAACGAAAGCAATGGGAAG 1831
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 CAGATGTTGTTGTTTATAATGCGGTGCTCAACGCATGTGTTCAACGAAAGCAATGGGAAG 1623
Query 1832 GAGCATTCTGGGTATTGCAACAGTTGAAGCAACGAGGGCAAAAACCTTCTCCTGTAACCT 1891
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 GAGCATTCTGGGTATTGCAACAGTTGAAGCAACGTGGGCAAAAACCTTCTCCTGTAACCT 1683
Query 1892 ATGGCCTCATCATGGAGGTAATGTTAGCATGTGAGAAGTACAATTTAGTTCATGAATTCT 1951
|||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 ATGGTCTTGTCATGGAGGTGATGTTAGCATGTGAGAAGTACAATTTAGTTCATGAATTCT 1743
Query 1952 TCAGGAAGATGCAGAAATCTTCTATCCCTAATGCTCTAGCATATAGAGTTCTTGTTAATA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TCAGGAAGATGCAGAAATCTTCTATCCCTAATGCTCTAGCATATAGAGTTCTTGTTAATA 1803
Query 2012 CTCTATGGAAAGAAGGTAAAAGCGACGAGGCCGTACATACGGTTGAGGATATGGAAAGCC 2071
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1804 CTCTATGGAAAGAAGGTAAAAGCGATGAGGCCATACATACGGTTGAGGATATGGAAAGCC 1863
Query 2072 GTGGTATTGTTGGATCAGCTGCTCTTTACTACGACCTTGCTCGCTGTCTATGTAGCGCAG 2131
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1864 GTGGTATTGTTGGATCAGCTGCTCTTTACTACGACCTTGCTCGCTGTCTTTGTAGCGCAG 1923
Query 2132 GAAGGTGTAATGAAGGGCTCAATATGG 2158
|||||||||||||||| ||||||||||
Sbjct 1924 GAAGGTGTAATGAAGGTCTCAATATGG 1950
Score = 1273 bits (689), Expect = 0.0
Identities = 765/802 (95%), Gaps = 4/802 (0%)
Strand=Plus/Plus
Query 2212 GCTGATCTTGTTCATACCATCCAATTTCAGCTTAAGAAGATATGTAGAGTTGCAAATAAA 2271
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1950 GCTGATCTTGATCATACCATCCAATGTCAGCTTAATAAGATATGTAGAGTTGCAAATAAA 2009
Query 2272 CCTCTCGTGGTGACTTACACTGGCCTGATCCAAGCATGCGTCGACTCGGGAAACATCAAG 2331
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2010 CCTCTCGTGGTGACTTACACTGGCCTGATCCAAGCATGCCTCGACTCGGGAAACATCAAG 2069
Query 2332 AATGCAGCTTACATCTTCGATCAGATGAAGAAGGTCTGCAGCCCTAACCTAGTCACTTGC 2391
||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 2070 AATGCAGCTTACATCTTCGATCACATGAAGAAGGTCTGCAGCCCGAACTTGGTCACTTGT 2129
Query 2392 AACATAATGCTAAAAGCTTATCTACAAGGCGGATTGTTTGAAGAAGCAAGGGAACTTTTC 2451
||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 2130 AACATAATGTTAAAAGCTTATCTACAAGGTGGGTTCTTTGAAGAAGCAAGGGAACTTTTC 2189
Query 2452 CAGAAGATGTCAGAAGACGGAAATCATATAAAAAACAGCTCGGATTTCGAATCAAGAGTA 2511
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2190 CAGAAGATGTCAGAAGACGGAAATCATATAAAAATCAGCTCGGATTTCGAATCAAGAGTA 2249
Query 2512 TTGCCAGACACGTACACGTTCAACACGATGCTAGAC-ACGTGTGCTGAACAAGAAAAGTG 2570
|||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||
Sbjct 2250 TTGCCAGACACGTACACGTTTAACACGATGCTAGACGA-GTGTGCTGAACAAAAAAAGTG 2308
Query 2571 GGATGATTTTGGTTATGCGTATCGGGAGATGTTGCGTCATGGATACCATTTCAATGCGAA 2630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2309 GGATGATTTTGGTTATGCGTATCGGGAGATGTTGCGTCATGGATACCATTTCAATGCGAA 2368
Query 2631 ACGCCATCTCAGAATGGTACTTGAAGCTAGCAGAGCAGGAAAGGAGGAGGTGATGGAAGC 2690
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2369 ACGGCATCTCAGAATGGTACTTGAAGCTAGCAGAGCAGGAAAGGAGGAAGTGATGGAAGC 2428
Query 2691 GACATGGGAACACATGAGACGAAGTAATAGAATTCCGCCATCGCCTCTAATCAAAGAAAG 2750
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2429 GACATGGGAACACATGAGACGAAGTAATAGAATTCCGCCAGCGCCTCTAATCAAAGAAAG 2488
Query 2751 ATTCTTCAGGAAACTCGAGAAAGGCGATCATATTTCGGCTATATCATCTCTTGCTGATCT 2810
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2489 ATTCTTCAGGAAACTCGAGAAAGGCGATCATATTTCGGCTATCTCGTCTCTTGCTGATCT 2548
Query 2811 TAATGGAAAAATTGAGGAGACTGAGTTACGAGCATTTTCAACTTCCGCATGGTCCAGAGT 2870
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 2549 TGATGGAAAAATTGAGGAGACCGAGTTACGAGCATTTTCGACTTCCGCATGGTCCAGGGT 2608
Query 2871 CTTGTCCCGATTTGAGCAAGATTCAGTTTTGAGGTTAATGGACGATGTGAACAGACGCCT 2930
|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 2609 CTTGTCCCGATTCGAGCAAGATTCGGTTTTGAGGTTAATGGACGATGTGAAGAGACGCGT 2668
Query 2931 AGGTTCGAGAAGTGAGTCTTCGGATTCGGTTTTGGGGAATCTATTGAGTTCTTGTAAAGA 2990
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2669 GGGTTCAAGAAATGAGTCTTCGGATTCGGTTTTGGGGAATCTATTGAGTTCTTGTAAAGA 2728
Query 2991 -TTATCTGAAGACCAGAACACA 3011
|| |||||||| |||||||||
Sbjct 2729 GTT-TCTGAAGAACAGAACACA 2749
Score = 477 bits (258), Expect = 2e-133
Identities = 326/359 (91%), Gaps = 3/359 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTGACGATTTCGACGAATGCTTTCGTAAATGCATCGCTTTTAGATGAAAGTCGG 60
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 24 ATGGCGGTGACGATTTCGACGAATACTTTCGTAAATGCATCTTTTTTAGATGAAAGTCGG 83
Query 61 AATTCTTTCTGGAGACCATTGTTTCATCAGCCATACTATAATTGCCGACGAGTCGTTCGT 120
|||| |||||||| ||||||||| | |||||| | |||||| ||||||||||||||||||
Sbjct 84 AATTTTTTCTGGAAACCATTGTTCCCTCAGCCTTCCTATAACTGCCGACGAGTCGTTCGT 143
Query 121 CTTAATTCGAGGAAATTGAATTCAAAGGTAATGTTTTGCTTGAATTTGAACACGAAGGAG 180
|| ||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 144 CTGAATTCGAGGAAATCGAAGACTAAGGTAATGTTCTGCTTGAATTTGAACACGAAGGAG 203
Query 181 GTTGGTTTGCAAAAACCCGGTGATAAAGGTTTTGAATTCAAACCCAGTTTTGATCAGTAC 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GTTGGGATGCAAACGTCGGGTGATAAAGGTTTTGAATTCAAACCCAGTTTTGATCAGTAC 263
Query 241 CTGCAAATCATGGAATCGGTTAAAACAGCAAGGAAGAAGAAGAAATTCGACAGATTGAAA 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 264 TTGCAAATCATGGAATCGGTTAAAACAGCGAGGAAGAAGAAGAAATTCGACAGATTTAAA 323
Query 301 GTTGAGGAAGATGATGGTGGAGGTGGGAATGGTGATAGTGTTTAT--G-AAGTGAAAGA 356
|||||||| ||||||||||||| ||| ||| ||||||||||| || | ||||||||||
Sbjct 324 GTTGAGGATGATGATGGTGGAGTTGGAAATAGTGATAGTGTTGATTCGGAAGTGAAAGA 382
Score = 220 bits (119), Expect = 4e-56
Identities = 188/219 (86%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 533 TGAAATTGAGTAAGAGTGGTGAATCTTCAGTGACTGTGCCTGAAGATGAGAG-TTTCAGG 591
|||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||| |||
Sbjct 559 TGAAATGGAGTAAGAGTGGTGAGTCTTCAGTGACTGTGCAAGAAGATGAGAGCTTT-AGG 617
Query 592 AAAAGGTACTCTAAGCAGGAGTATCACCGTTCCTCTGATACATCGAGAGGGATTGAAAGA 651
| ||||||||| ||||||||| |||||||||||||||| | | | || | |||
Sbjct 618 AGAAGGTACTCGAAGCAGGAGCATCACCGTTCCTCTGA-A-A-C-------ATCG--AGA 665
Query 652 GGTTCGAGAGGTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAGCC 711
||||| | || |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 666 GGTTCCACAGTTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGATTTCCCAGAATAGCC 725
Query 712 AAAGATGCAAGATGGAGTAAAAGTCGTGAATCTTCAGTG 750
|||||||||||||||||||| ||| ||||||||| ||||
Sbjct 726 AAAGATGCAAGATGGAGTAAGAGTGGTGAATCTTTAGTG 764
Score = 196 bits (106), Expect = 6e-49
Identities = 154/177 (87%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 354 AGATATGAAGATTAAGAGTGGTGA-GCTAAAAGATGAAACTTTCAGGAAGAGATACTCAA 412
|||| ||||||||||||||||||| || ||| ||||||| |||||||| ||||||| |||
Sbjct 416 AGATGTGAAGATTAAGAGTGGTGAGGC-AAAGGATGAAAGTTTCAGGAGGAGATACACAA 474
Query 413 GGCAGGAGATTGTAAGTGATAAACGTAATGAGAGAGTTTTCAAGAGGAATGGAGAAATTG 472
|||||||||||||||||||||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 475 GGCAGGAGATTGTAAGTGATAAACGTAATGTGAGAGGTTTCAATAGGAGTGAAGAAATTG 534
Query 473 AAAATCATAGAGTGG-CTACAGATTTGAAATGGAGTAAGAGTGGTGAATCTTCAGTG 528
|| ||| ||| | | | |||| |||||||||||||||||||||| |||||||||
Sbjct 535 GAATTCAGAGAATAAACAA-AGATGTGAAATGGAGTAAGAGTGGTGAGTCTTCAGTG 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114080283775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5