BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30630.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473294 jgi|Araly1|473294|fgenesh2_kg.1__3248__AT1G30630.1 1875 0.0
> Ahg473294 jgi|Araly1|473294|fgenesh2_kg.1__3248__AT1G30630.1
Length=1205
Score = 1875 bits (1015), Expect = 0.0
Identities = 1146/1208 (95%), Gaps = 13/1208 (1%)
Strand=Plus/Plus
Query 9 ACACTTCAGTTTTCTTTATTTTGGAGTTAGACACGGATCTGTGAGATCTagaagaagaag 68
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ACACTTCAGTTTTCTCTATTTTGGAGTTAGACACGGATCTGTGAGATCTAGAGGAAGAAG 60
Query 69 aagaagaagaagCTAAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTCAATTTGA 128
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 AAGAAGAAGAAGCTGAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTTAACCTGA 120
Query 129 GAAACCATTTCTACTTGGGTGCTTATCAAGCTGCGATCAACAACAGCGAGATCCCTAATC 188
|||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 121 GAAACCATTTTTACTTGGGTTCTTACCAAGCGGCGATCAACAACAGCGAGATCCCTAATC 180
Query 189 TTTCGCAGGAAGATATCGTCGAGCGAGACTGTCTCGTCCATCGCGCTTACATCGCTCTCG 248
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTTCGCAGGAAGATATCGTCGAGCGAGACTGCCTCGTCCATCGCGCTTACATCGCTCTCG 240
Query 249 GAAGTTACCAGCTTGTCATCAGTGAGATCGATGAAGCCGCTGCTACTCCTCTACAGGCAG 308
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GAAGTTATCAGCTTGTCATCAGTGAGATCGATGAAGCGGCTGCTACTCCTCTACAGGCAG 300
Query 309 TGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGGAATCAACCATTTCGAGCT 368
||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||
Sbjct 301 TGAAACTCCTTGCTATGTATCTAGCGAGTCCTGGAAATAAGGAATCAACAATTTCGAGCT 360
Query 369 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTA-TCAGGTTGATTGCT 427
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 361 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATTC-GGTTGATTGCT 419
Query 428 GGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGA 487
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GGTACTATATTCATGCATGAGGAAGACTATAACGAGGCTCTGAAGCACACTCATTCTGGA 479
Query 488 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGAT 547
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCATAGATCAGAT 539
Query 548 TTTGCGGAGAAACAACTGAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAG 607
| ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATGCAGAGAAACAGCTAAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAA 599
Query 608 CTCGCGAGCGCGTGGTTGAATCTGGCAGTAGGTGGTTCCAAGATACAGGAAGCTTATCTA 667
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CTCGCGAGCGCGTGGTTGAACCTGGCAGTAGGTGGTTCCAAAATACAGGAAGCTTATCTA 659
Query 668 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGCTTGATCTTGAACGGCAAAGCA 727
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGTTTGATCTTGAACGGCAAAGCA 719
Query 728 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 779
Query 788 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTCGTTGTATGCAGTCTTCACGTC 847
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 780 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTAGTTGTATGCAGCCTTCATGTC 839
Query 848 GGGAAATCATCTTCTCGCTACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 907
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGGAAATCATCTTCGCGATACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 899
Query 908 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCACTTCAATCTTTCGCCTGA 967
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCTCTTCAATCTTTCGCCTGA 959
Query 968 AGTACCTCAAAGTCCATGGAATCAATTTGCCTTATGATCTACCAGAAGAACATCATATTA 1027
|| |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 960 AGGACCTCAAAATCCATGGAATCAATTTGCGTTATAATCTACCAGCAGAACATCATATTC 1019
Query 1028 TTACC-GACCCTATCTTGAAATTATCATAGATAAACAGTTTTTT-------CCATTGGAT 1079
||||| | |||| |||||||||||||||| || ||||||||||| |||| ||||
Sbjct 1020 TTACCAG-CCCTGTCTTGAAATTATCATATATGAACAGTTTTTTTTTTTTTCCATCGGAT 1078
Query 1080 ATGTTGCATTTTACTTTGATTTCTCACTGAAGCTTTTGTTTTCATTGAGTTTCGAATCCA 1139
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 ATGTTGCATTTGAATTTGATTTCTCACTGAAGCTTTTGTTGTCATTGAGTTTCGAATCCA 1138
Query 1140 ACAGAACTACAGATCTTGTTCCTTGAA-ATCCAGAATCTCCATAACTGATGAGACAAAAG 1198
||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1139 ACAAAACTAGAGATCTTGTTCCTT-AATATCCAGAATCTCCATAACTGATGAGACAAAAG 1197
Query 1199 GCAGACTT 1206
|||||||
Sbjct 1198 CCAGACTT 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5