BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30690.1 Length=1984 Score E Sequences producing significant alignments: (Bits) Value Ahg912896 jgi|Araly1|912896|Al_scaffold_0001_3150 2566 0.0 > Ahg912896 jgi|Araly1|912896|Al_scaffold_0001_3150 Length=1641 Score = 2566 bits (1389), Expect = 0.0 Identities = 1564/1645 (95%), Gaps = 26/1645 (2%) Strand=Plus/Plus Query 132 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 60 Query 192 GCTGTTGTTCCTGAGGAGACTACTGTTAAGGCTGTTGTGG-A-A-G-AG-A--CTAAG-- 242 |||||||||||||||||||| ||||| || ||||||||| | | | || | | ||| Sbjct 61 GCTGTTGTTCCTGAGGAGACCACTGTGAAATCTGTTGTGGAAGAGGAAGAAGTCAAAGCT 120 Query 243 GTTGAAGAAGATGAGAGCAAGCCTGAGGGTGTGGAGAAGAGTGCTTCCTTCAAAGAAGAG 302 |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| Sbjct 121 GTTGAAGAAGATGAGAGCAAGCCTAAGGGTGTGGAGAAGAGTGCTTCGTTTAAAGAAGAG 180 Query 303 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCACTGAGTGATCTCAAGTCT 362 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCTCTGAGTGATCTCAAGTCT 240 Query 363 AAGCTTGAGGAAGCTATTGTTGACAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 422 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 AAGCTTGAGGAAGCTATTGTTGAAAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 300 Query 423 CCTAtgaaggagaagaaggaagaggttgtgaaacctgaagctgaggttgagaagaagaag 482 ||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 301 CCTGTTAAGGAGAAGAAGGAAGAGGTGGTGAAACCAGAAGCTGAGGTTGAGAAGAAGAAG 360 Query 483 gaagaagcagcagaggagaaggttgaagaagagaagaaATCTGAGGCTGTTGTTACCGAA 542 || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 GAGGAAGAAGCAGAGGAGAAGGTTGAGGAAGAGAAGAAATCTGAGGCTGTTGTTACCGAA 420 Query 543 GAAGCACCGAAAGCTGAGACTGTTGAGGCT-GTTGTTACAGAGGAGATAATCCCCaagga 601 |||||| |||||| |||||||||||||| | |||| | |||||||||||| ||||||||| Sbjct 421 GAAGCAGCGAAAGATGAGACTGTTGAGG-TGGTTGCTGCAGAGGAGATAACCCCCAAGGA 479 Query 602 agaagtgactactgttgttgagaaggt---agaagaagaaaccaa-g--gaagaagagaa 655 ||||||||| ||||||||||||||||| ||||||||| | || | ||||||||||| Sbjct 480 AGAAGTGACGACTGTTGTTGAGAAGGTAGCAGAAGAAGATAGTAAGGAAGAAGAAGAGAA 539 Query 656 gaaAACCGAGGATGTTGTTACTGAAGAAGTGAAAGCTGAGACTATTGAGGTGGAGGATGA 715 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 GAAAACTGAGGATGTTGTTACTGAAGAAGTGAAAGCTGAGACTATCGAGGTGGAGGATGA 599 Query 716 AGATGAGTCGGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 775 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AGATGAGTCAGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 659 Query 776 AGCTGAAAGCACGGATGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 835 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGCTGAAAGCACAGACGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 719 Query 836 CGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAAAACAAGATTGATTC 895 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 720 TGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAACACAAGATTGATTT 779 Query 896 GATCCTTGGAGAGGAGTTTGGGGAGGATCTTGCCACTGCAGCTTACATGAACGGTGTGGA 955 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 780 GATCCTTGGAGAGGACTTTGGGGAGGATCTTGCCTCTGCAGCTTACATGAACGGTGTGGA 839 Query 956 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGCGAGGAGCTTTACCAGACG--A-T 1012 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | | Sbjct 840 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGTGAGGAGGTTTACCAGACGACATT 899 Query 1013 TGGGTCGGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 1072 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGGGTCAGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 959 Query 1073 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCACGATCT 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 960 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCATGATCT 1019 Query 1133 CAAAAACGCTCCTGGAGTGTCAAGAACAGAGATTTGGGTCGGAATCAAGAAAGTAATCGA 1192 |||||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| | Sbjct 1020 CAAAAACGCTCCTGGAATGTCAAGAACAGATCTCTGGGTTGGAATCAAGAACGTAATC-A 1078 Query 1193 -GACTTTGCAGGACAACTATCCGGAATTCGTGTCCAGAAACATATTCATCAACGTTCCAT 1251 ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1079 TGACTTTGCAGGACAATTATCCGGAATTCGTGTCCAGAAACATATTCATCAATGTTCCAT 1138 Query 1252 TCTGGTTCTACGCCATGAGA-GCTGTCCTCTCGCCATTCTTAACTCAACGAACCAAGAGC 1310 |||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||| Sbjct 1139 TCTGGTTCTACGCCATCA-ATGCTGTCCTCTCGCCATTCTTAACGCAACGAACCAAGAGC 1197 Query 1311 AAGTTTGTTGTGGCTCGTCCCGCTAAGGTCAGAGAGACTCTTCTCAAGTACATTCCAGCT 1370 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1198 AAGTTTGTTGTGGCTCGTCCAGCTAAGGTCAAAGAGACTCTTCTCAAGTACATTCCAGCT 1257 Query 1371 GATGAGCTCCCAGTTCAGTACGGTGGGTTCAAAACAGTA-GACGATACCGAATTCTCCAA 1429 ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 1258 GATGAGCTCCCAGTTCAGTACGGAGGGTTCAAAACAG-ATGACGATACCGAATTCTCCAA 1316 Query 1430 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1376 Query 1490 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1436 Query 1550 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1496 Query 1610 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1556 Query 1670 GATTGTTCTTACCGTTGACAATGTCTCTGGCAAGAAGAAGAAAGTTCTGTACAGGTACAG 1729 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1557 GATTGTTCTTACGGTTGACAATGTCTCTGGCAAGAAGAAGAGAGTTCTGTACAGGTACAG 1616 Query 1730 AACCAAGACTGAATCCTCTTCCTGA 1754 ||||||||||||||||||||||||| Sbjct 1617 AACCAAGACTGAATCCTCTTCCTGA 1641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74580699710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5