BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30730.1 Length=1681 Score E Sequences producing significant alignments: (Bits) Value Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1 2381 0.0 Ahg922140 jgi|Araly1|922140|scaffold_103421.1 1546 0.0 > Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1 Length=1581 Score = 2381 bits (1289), Expect = 0.0 Identities = 1483/1577 (94%), Gaps = 12/1577 (1%) Strand=Plus/Plus Query 1 ATGGAAAAATTACTCATAATTTGCATGTTACTAATCTCAGTTTTAGTTGCAACTTCACAG 60 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| Sbjct 1 ATGGAAAAATTACTCATAATTTGCCTGTTACTAATCTCAGTTTCAGTTGCAACTTCCCAG 60 Query 61 TCGCAAACCGATCCAGAGACATTCCTCCGATGTCTCGTAAGAGAAGGATCAAACCCACAG 120 || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 61 TCCCAAACCGATCCGGAGACTTTCCTCCGATGTCTCGTAAGAGAGGGATCAAACCCGCAG 120 Query 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180 Query 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240 Query 241 ACCCCCACCACGTGGTCACACATTTCTCCGGTGCTAGCTTGCGCACGCTTGTTCCCTGTC 300 ||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 241 ACCCCTACCACATGGTCACACATTTCTCCGGCGCTAGCTTGCGCACGCTTACTCCCTGTC 300 Query 301 CAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTCTCTTACACCTCCACAGCT 360 || ||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 301 CAAGTCAGAATCCGAAGCGGCGGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT 360 Query 361 CCGTTCTTCCTCATCGACTTGCTCAACTTCAAATCCGTTGATGTGAATCTCACGGAAGGA 420 |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 CCGTTCTTTGTCATCGACTTGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAGGA 420 Query 421 ACGGCTTGGGTTGATACCGGCGCTACACTGGGAGAGCTTTATTATAAAATCGCTGAGAAA 480 ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 421 ACGGCTTGGGTTGATACCGGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAA 480 Query 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540 Query 541 AGCGGCGGAGGGTACGGGACAATGATGAGAAAGTATGGTTTGTCGGTGGACAACGTTGTC 600 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 541 AGCGGCGGAGGGTACGGAACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTC 600 Query 601 GGCTCCAGGATCATCGACTCTAATGGGAACACCTACTTCGATCGAATGTCGATGGGGGAA 660 ||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||| Sbjct 601 GGCTCCAGGATCATCGACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAA 660 Query 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGAGTTTCGGCATCGTGATGGGATAC 720 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATAC 720 Query 721 AAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACGGTTTTTAGCGTCGGAAAAACCGTC 780 |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 721 AAAATCCGGTTGGTTCCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTC 780 Query 781 GGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAACTTCTCTCATAGTACGGATCGG 840 ||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||| Sbjct 781 GGAGAAGGAGCCGTTGATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGG 840 Query 841 AATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAACGGTGCAAAGCCGGGTGaaaaaaaG 900 |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 841 AATTTGTTCGTGAAGCTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACT 900 Query 901 GTTTTAGCGACTTTCATTGGGATGAATCTT-GGCGGGTTTGATAAGACGTTGAACGTGAT 959 ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 901 GTTTTAGCGACTTTCATTGGGATGAAT-TTAGGCGGGTTGGATAAGACGTTGAACGTGAT 959 Query 960 GAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GAACCGGGATTTCCCAGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019 Query 1020 CGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTTGGTACACCGACTTCTGTGCTACTAAA 1079 |||||||||||||||||||||||||| |||| |||| ||||| ||||||||| ||||||| Sbjct 1020 CGATTCGGTTCTGTTTTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA 1079 Query 1080 CCCTACG-GTCACAAAAAAGTTGTTCATGAAACGGAAATCGGACTACGTGAAGCGTCCGG 1138 ||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1080 CCCTA-GAGTTACAAAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGA 1138 Query 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAG-TTGGAGAAAGTTGAA 1197 |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| Sbjct 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAGGTTG-ATAAAGTTGAA 1197 Query 1198 ATGAATTGGAATCCGTATGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGGACACCTTTC 1257 |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1198 ATGAATTGGATTCCATATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTC 1257 Query 1258 CCACATAGAGGAGGCAATTTGTTCAACATTGAATATATCATAGACTGGTCAGAAGCTGGA 1317 |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1258 CCACATAGAGAAGGAAATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGA 1317 Query 1318 GATAATGTGGAGAAGAAAT-ATTTGGC--GCTCGCAAATGAGTTTTATAGATTCATGACC 1374 ||| | ||||| ||| | | ||||||| | | |||| |||| | || | |||||||||| Sbjct 1318 GATGACGTGGAAAAGGA-TCATTTGGCAAG-T-GCAAGTGAGATGTACAAATTCATGACC 1374 Query 1375 CCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATATTGACATTGGG 1434 || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 1375 CCATACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGG 1434 Query 1435 TCAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCTATGGGGCTAAATATTTCAAAGAC 1494 ||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1435 TCAGGTGTTAATTCCACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGAC 1494 Query 1495 AATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCGATGAGATAAACTTTTGGAGGAAC 1554 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1495 AATTTCGAAAGGTTAGTGGATATCAAAACCAAGTTCGATGAAATAAACTTTTGGAGGAAC 1554 Query 1555 GAACAAAGTATTCCGGT 1571 ||||||||||||||||| Sbjct 1555 GAACAAAGTATTCCGGT 1571 > Ahg922140 jgi|Araly1|922140|scaffold_103421.1 Length=1622 Score = 1546 bits (837), Expect = 0.0 Identities = 1327/1561 (85%), Gaps = 43/1561 (3%) Strand=Plus/Plus Query 50 CAACTTCACAGT-CGCAAACCGATCC-AGAGACATTCCTCCGATGTCTCGTA-AGAGAAG 106 |||||||||| | || |||||||| | || | ||||| |||||||||| | ||| || Sbjct 73 CAACTTCACAATCCG-TGACCGATCCAATAG-CTTTCCTTCGATGTCTCG-ATAGACAAC 129 Query 107 GATCAAACCC-ACAGGTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTC 165 | | |||| ||| || | | ||||| |||| | || |||||| ||||||| || ||| Sbjct 130 CAACGGACCCAACAAGTCCT-AACTCCGCCGTCGCTTATATCCCAACAAACTCTTCCTTC 188 Query 166 ACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAA 225 ||| |||||||||||||||| ||||||||||||||||||||||||||||| || | ||| Sbjct 189 ACCGCCGTCCTCCGCCGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCGTAAA 248 Query 226 CCCATCGCCATCATCACCCCCACCACGTGGTCACACAT-TTCTCCGGTGC--TAGCTTGC 282 |||||| || || | | | ||||||||| |||||| | | | ||| ||| ||| Sbjct 249 CCCATCTCCGTCGTTGCAGCTACCACGTGG--ACACATATAC-AAGCTGCTATAGGATGC 305 Query 283 GCACGCTTGTTCCCTGTCCAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTC 342 |||||| | || || |||| ||||||||| |||| || ||||||||||||||||||||| Sbjct 306 GCACGCGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTC 365 Query 343 TCTTACACCTCCACAGCT-CCGTTC-TTCCTCATCGACTTGCTCAACTTCAAATCCGTTG 400 |||||||| ||||| | | || ||| || || ||||| || || || |||||||| | Sbjct 366 TCTTACACTTCCACCG-TCCCTTTCTTTGTTC-TCGACATGTTCGGTTTTAAATCCGTGG 423 Query 401 ATGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACCGGCGCTACAC-TGGGAGAGCT 458 | |||||||| || | || ||||||||||||||||| | || ||||| | | |||||||| Sbjct 424 ACGTGAATCTAACCG-AGAGAACGGCTTGGGTTGATTCTGGTGCTAC-CGTCGGAGAGCT 481 Query 459 TTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTAC 518 |||||| || |||||||| ||||||||| |||| |||||||||||||||| ||| || Sbjct 482 TTATTACCGGATAGCTGAGAAGAGCAATGTTTTTGGATTTCCGGCGGGTTTGTCTACGAC 541 Query 519 ATTGGGCGTTGGTGGACATATTAGCGGCGGAGGGTACGGGACA-ATGATGAGAAAGTATG 577 ||||||||| ||||||||| ||||||||||||| ||||| | | ||||||||||||||| Sbjct 542 ATTGGGCGTCGGTGGACATTTTAGCGGCGGAGGATACGGTA-ATCTGATGAGAAAGTATG 600 Query 578 GTTTGTCGGTGGACAACGTTGTCGGCTCCAGGATCATCGACTCTAATGGGAACACCTACT 637 | ||||||||||| || |||||||||||| ||||| | || || |||||||||| || | Sbjct 601 GATTGTCGGTGGATAATGTTGTCGGCTCCGGGATCGTTGATTCGAATGGGAACATCTTCA 660 Query 638 TCGATCGAATGTCGATGGGGGAAGAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGA 697 ||||||| | |||||||||||||| | |||||||||| ||||||| ||||| || |||| Sbjct 661 CCGATCGAGTTTCGATGGGGGAAGACCGTTTCTGGGCGATTCGAGGTGGTGGTGCAGCGA 720 Query 698 GTTTCGGCATCGTGA-TGGGATACAAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACG 756 | | ||| | || | | || ||||| |||| | | || ||||| || ||||||||||| Sbjct 721 GCTACGGTGTTGT-ACTCGGCTACAAGATCCAGCTAGTACCGGTGCCAGAGAAAGTTACT 779 Query 757 GTTTTTAGCGTCGGAAAAACCGTCGGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAG 816 ||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||| Sbjct 780 GTTTTTAAAATCGGAAAACCCGTCGGAGAAGGAGCGGGTGATCTTATAATGAAGTGGCAG 839 Query 817 AACTTCT-CTCATAGTACGGATCGGAATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAA 875 | || | ||||||||||||||||||||||||| |||| | |||| |||||||| ||||| Sbjct 840 -AGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGGTTGACGTTGACTTTGGTCAA 898 Query 876 CGGTGCAAAGCCGGGTGaaaaaaaGGTTTTAGCGACTTTCATTGGGATGAATCTT-GGCG 934 |||| | ||||| |||||||| | |||||| || |||| ||||||||| || || ||| Sbjct 899 CGGTACGAAGCCTGGTGAAAAGATGGTTTTGGCTTCTTTTATTGGGATGTAT-TTAGGCC 957 Query 935 GGTTTGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAA 993 ||| |||||| | ||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 958 GGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGTTGAAGAAA 1016 Query 994 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTT 1053 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1017 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTT 1076 Query 1054 GGTACACCGACTTCTGTGCTACTAAACCCTACGGTCACAAAAAAGTTGTTCATGAAACGG 1113 |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| Sbjct 1077 GGTACACCGACTTCTGTGCTGCTAAACCC---GGTCGCAAAAAAGTTGTTCATGAAACGA 1133 Query 1114 AAATCGGACTACGTGAAGCGTCCGGTTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAA 1173 ||||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| Sbjct 1134 AAATCTGACTACGTGAAGCGTCCGATTTCGAGAGCCGGCATCGATTTGATACTCAAGAAA 1193 Query 1174 TTGGTTGAG-TTGGAGAAAGTTGAAATGAATTGGAATCCGTATGGAGGAAGAATGGGTGA 1232 ||||| ||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 1194 TTGGTAGAGGTTG-AGAAAGTTAAAATGAATTGGAATCCGTACGGAGGAAGAATGGGTGA 1252 Query 1233 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGGAGGCAATTTGTTCAACATTGAATA 1292 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 1253 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTA 1312 Query 1293 TATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAGAAA-TATTTGGCGCTCGCAA 1351 ||||||||||||||| |||||||||||||| || |||| |||| |||||||| ||||| | Sbjct 1313 TATCATAGACTGGTCCGAAGCTGGAGATAACGTCGAGA-GAAAATATTTGGCACTCGCGA 1371 Query 1352 ATGAGTTTTATAGATTCATGACCCCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGA 1411 ||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1372 ATGAGTTATACGGATTCATGACCCCGTACGTGTCTAGTAGTCCGAGGGAGGCGTTTTTGA 1431 Query 1412 ATTACCGTGATATTGACATTGGGTCAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCT 1471 |||||||||| ||||||| |||||||||| ||| ||||||||| ||||||||||||||| Sbjct 1432 ATTACCGTGACCTTGACATAGGGTCAAGTGTTAAGTCCACGTACCAGGAAGGTAAAATCT 1491 Query 1472 ATGGGGCTAAATATTTCAAAGACAATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCG 1531 |||||| ||||||||||||||||||||||||||| |||||||||| ||||||| | ||| Sbjct 1492 ATGGGGATAAATATTTCAAAGACAATTTCGAGAGACTAGTGGATATTAAAACCACGATCG 1551 Query 1532 ATGAG-ATAAACTTTTGGAGGAACGAACAAAGTATTCCGGTCCGGAAGT-AATAAGTTCA 1589 ||| | | ||||||||||| ||||||||||| |||||||| || |||| |||||||||| Sbjct 1552 ATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATTCCGGTTCG-AAGTTAATAAGTTCA 1609 Query 1590 A 1590 | Sbjct 1610 A 1610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63039355475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5