BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30825.1 Length=1305 Score E Sequences producing significant alignments: (Bits) Value Ahg473323 jgi|Araly1|473323|fgenesh2_kg.1__3277__AT1G30825.1 1775 0.0 Ahg937125 jgi|Araly1|937125|scaffold_501316.1 285 6e-76 Ahg932941 jgi|Araly1|932941|scaffold_400929.1 285 6e-76 Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638 285 6e-76 Ahg931232 jgi|Araly1|931232|scaffold_303689.1 274 1e-72 Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842 268 6e-71 Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615 268 6e-71 Ahg928779 jgi|Araly1|928779|scaffold_301236.1 215 7e-55 > Ahg473323 jgi|Araly1|473323|fgenesh2_kg.1__3277__AT1G30825.1 Length=1246 Score = 1775 bits (961), Expect = 0.0 Identities = 1115/1185 (94%), Gaps = 28/1185 (2%) Strand=Plus/Plus Query 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60 Query 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGGCTCTAGGGTTTC 120 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGACTCTAGGGTTTA 120 Query 121 TCTGTGATTCAGTTAACTCCTTTAGATATCGTAAGAAAGTAATCGATGATACTATTGCAG 180 || || | || || | | || || | || || | | || | |||| Sbjct 121 TC-GT-A---AGA-AAGT-----A-AT--CG-ATGA---TA--C--T-AT--T---GCAG 152 Query 181 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 212 Query 241 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 213 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 272 Query 301 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCAAATCCACCACCTGAAGCA 360 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 273 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCGAATCCACCACCTGAAGCA 332 Query 361 ATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAACCACTTACGGGACA 420 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 333 ATGTCCTTTGATGGACTTCCTTTGGGAGCTATAGAAGCTATTAAAACTACTTACGGGACG 392 Query 421 GGTTTTCAAATACTTGATCCTCCTAGAGATGGTTTTAGTTTAACCCTCAAGCTCAATTTC 480 ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 393 GGTTTTCAAATACTTGATCCTCCAAGAGATGGGTTTAGTTTAACCCTGAAGCTCAATTTC 452 Query 481 TCTAAAGTTCGTCCTGATGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTGGTG 540 |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 453 TCTAAAGTTCGTCCGGACGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTTGTG 512 Query 541 ATGGGTGCACCGTTAAAAATCATTTTCAAGCATTTAGCTTCAAGGACGGTTGCTCCTGAG 600 |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 513 ATGGGTGCGCCGCTAAAAATCATTTTCAAGCATTTAGCTTCAAGAACGGTTGCTCCTGAG 572 Query 601 CTGGATAGGCTTGTAGCAATTATGCATAGACCTAACGAGACGTTTTTCCTCGTGCCTCAG 660 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 573 CTGGATAGGCTTGTAGCAGTTATGCATAGACCTAACGAGACATTTTTCCTCGTGCCTCAG 632 Query 661 GCGGATAAAGTCACTGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACGATTCTG 720 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 633 GCGGATAAAGTCACCGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACAATTCTA 692 Query 721 GCGACTTCTTTCCTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCGCTTAATACTGCT 780 || ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 693 GCAACTTCTTTCTTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCACTTAATACTGCT 752 Query 781 CCTTCTTGTTCTTGGTCTCCAACCGCACCGCAGGAATTAGAGGGAGCTCCTAAAGAAACA 840 ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 753 CCTTCTTGTTCGTGGTCTCCAACCGCACCGCATGAATTAGAAGGAGCTCCTAAAGAAACA 812 Query 841 CTATCCGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 900 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 CTCTCTGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 872 Query 901 AAGCTCGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTATCACGTC 960 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 873 AAGCTTGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTACCATGTC 932 Query 961 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 992 Query 1021 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCGATGAACAACAAGTCATTTAAA 1080 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 993 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCAATGAACAACAAGTCATTTAAA 1052 Query 1081 CGGCTAGGACTCAACGAGGTCAATCACACCAACTCGAAGTAGTTGGATTTCTCACGAAGC 1140 ||||||||||||||||| | ||||||||||||||| |||||||| |||||||||| |||| Sbjct 1053 CGGCTAGGACTCAACGATGCCAATCACACCAACTCCAAGTAGTTTGATTTCTCACAAAGC 1112 Query 1141 AATTTTGTAAAAACTTGTGATTAGCTGAGACATGTAttttttttA 1185 |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1113 AATTTTGTAAAAACTTGTGAGTAGCTGAGACATGTTTTTTTTTTA 1157 Score = 154 bits (83), Expect = 2e-36 Identities = 93/98 (95%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1207 TTTATTTTAGTACAATTCTTTCAGATATTTCTATACATCTGATCTTGCTAAATATTTGAA 1266 ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1149 TTTTTTTTAGTACAATTCTTTCAGATATTTCTATACATCTGATCCTGCGAAATATTTGAA 1208 Query 1267 CAAATGTATAATGTGAAAATTGTAAGAAACTCACCTTG 1304 |||||||||| |||||||||||||||||| |||||||| Sbjct 1209 CAAATGTATAGTGTGAAAATTGTAAGAAATTCACCTTG 1246 > Ahg937125 jgi|Araly1|937125|scaffold_501316.1 Length=915 Score = 285 bits (154), Expect = 6e-76 Identities = 187/203 (92%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 285 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 344 Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 345 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 403 Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 404 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 463 Query 407 CCACTTACGGGACAGGTTTTCAA 429 | |||||| |||| ||||||||| Sbjct 464 CTACTTACAGGACTGGTTTTCAA 486 > Ahg932941 jgi|Araly1|932941|scaffold_400929.1 Length=914 Score = 285 bits (154), Expect = 6e-76 Identities = 187/203 (92%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 284 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 343 Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 344 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 402 Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 403 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 462 Query 407 CCACTTACGGGACAGGTTTTCAA 429 | |||||| |||| ||||||||| Sbjct 463 CTACTTACAGGACTGGTTTTCAA 485 > Ahg894642 jgi|Araly1|894642|Al_scaffold_0006_2638 Length=432 Score = 285 bits (154), Expect = 6e-76 Identities = 187/203 (92%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 150 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 209 Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 210 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 268 Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 269 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 328 Query 407 CCACTTACGGGACAGGTTTTCAA 429 | |||||| |||| ||||||||| Sbjct 329 CTACTTACAGGACTGGTTTTCAA 351 > Ahg931232 jgi|Araly1|931232|scaffold_303689.1 Length=637 Score = 274 bits (148), Expect = 1e-72 Identities = 185/203 (91%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 245 TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 304 Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 305 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 363 Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 364 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 423 Query 407 CCACTTACGGGACAGGTTTTCAA 429 | |||||| ||| ||||||||| Sbjct 424 CTACTTACAAGACTGGTTTTCAA 446 > Ahg907761 jgi|Araly1|907761|Al_scaffold_0002_842 Length=465 Score = 268 bits (145), Expect = 6e-71 Identities = 184/203 (91%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 |||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 93 TCTTGATAAAGCTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 152 Query 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 |||||||||| || |||| ||| |||| || ||||||||| | ||||||||||||||||| Sbjct 153 TGTTCAGGTGGCAGTGAATAATGCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 211 Query 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 212 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 271 Query 407 CCACTTACGGGACAGGTTTTCAA 429 | |||||| |||| ||||||||| Sbjct 272 CTACTTACAGGACTGGTTTTCAA 294 > Ahg344273 jgi|Araly1|344273|fgenesh1_pg.C_scaffold_4000615 Length=507 Score = 268 bits (145), Expect = 6e-71 Identities = 185/204 (91%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 135 TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 194 Query 288 TGTTCAGGTGACAA-TGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAAT 345 ||||||||||| || ||||||||||||| || ||||||||| | |||||||||||||||| Sbjct 195 TGTTCAGGTGA-AAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAAT 252 Query 346 CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAA 405 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 253 CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAA 312 Query 406 ACCACTTACGGGACAGGTTTTCAA 429 | |||||| ||| ||||||||| Sbjct 313 GCTACTTACATGACTGGTTTTCAA 336 > Ahg928779 jgi|Araly1|928779|scaffold_301236.1 Length=1142 Score = 215 bits (116), Expect = 7e-55 Identities = 133/141 (94%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 259 TGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACAATGAAGAATCCAAATCTG 318 ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| || Sbjct 904 TGGATTGCATTTGATGATGTTTGTTACCATGTTCAGGTGACAGTGAAGAATCCAAACCTC 963 Query 319 TTGTTGCTT-TCGGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT 377 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 TTGTTGCTTGT-GGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT 1022 Query 378 TCCTTTAGGAGCTATAGAAGC 398 ||| ||||||||||||||||| Sbjct 1023 TCCATTAGGAGCTATAGAAGC 1043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48797333760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5