BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30900.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513 3070 0.0
Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267 1426 0.0
> Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513
Length=1896
Score = 3070 bits (1662), Expect = 0.0
Identities = 1820/1898 (96%), Gaps = 4/1898 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTTGATTCATAAAGGAGCCACCTTGGCTCTGTTTCTAGCGTTGACTATGGTGGTC 60
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTTGATTCATAAAGGAGCCATCTTGGCTCTGTTTCTAGCGTTGACTATGGTGGTC 60
Query 61 AACGGAGTTTTCGGGAGATTCATCGTTGAGAAGAGTAGCGTGACGATTCTAAACCCTTTG 120
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 AACGGAGTTTTCGGGAGATTCATCGTGGAGAAGAGTAGCGTCACGATTCTAAACCCTTTG 120
Query 121 GCAATGCGGTCTAAGCACGACGCAGCCATTGCTAACTTCGGTGTTCCTAACTACGGTGGT 180
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GCAATGCGGTCTAAACACGATGCAGCCATTGCTAACTTCGGTGTTCCTAATTACGGTGGT 180
Query 181 TACATGATCGGCTCCGTCGTTTACGCCGGTCAAGGAGCTTATGGATGTGACTCTTTTGAC 240
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TACATGATCGGTTCCGTTGTTTACGCTGGTCAAGGAGCTTATGGATGTGACTCTTTTGAT 240
Query 241 AAAACTTTCAAACCCAAATTCCCTCGTCCTACCATTTTGATCATCGATCGTGGAGAGTGT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AAAACTTTCAAACCCAAATTCCCTCGTCCTACCATTTTAATCATCGATCGTGGAGAGTGC 300
Query 301 TACTTTGCATTAAAGGTATGGAACGGTCAACAATCCGGTGTAGCAGCAGTTTTAGTAGCT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 TACTTTGCATTAAAGGTATGGAACGGTCAACAATCCGGTGCAGCAGCAGTTTTAGTAGCT 360
Query 361 GATAACGTCGATGAGCCATTGATAACAATGGATTCACCTGAGGAATCCAAAGAAGCTGAT 420
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GATAACGTTGATGAGCCATTGATAACTATGGATTCACCTGAGGAATCCAAAGAAGCTGAT 420
Query 421 GACTTTATAGAGAAACTCAACATTCCATCGGCTTTAATAGACTTTTCTTTCGCCAATACT 480
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 421 GACTTTATAGAGAAACTCAACATTCCTTCGGCTTTAATCGACTTTTCTTTCGCCAATACA 480
Query 481 CTCAAGCAAGCTCTTAAGAAAGGTGAGGAAGTAGTCCTGAAGATAGACTGGAGTGAGTCA 540
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCAAGCAAGCTCTTAAAAAAGGCGAGGAAGTAGTCCTGAAGATAGACTGGAGTGAGTCA 540
Query 541 TTACCTCATCCGGATGAGAGAGTTGAGTATGAGCTATGGACTAACACGAACGATGAGTGT 600
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 541 TTACCTCATCCGGATGAGAGAGTTGAGTATGAGTTATGGACTAACACGAATGATGAGTGT 600
Query 601 GGTGCACGGTGTGATGAGCAGATGAATTTCGTAAAAAACTTCAAAGGACATGCGCAGATT 660
||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 601 GGTGCGCGGTGCGATGAGCAGATGAATTTTGTCAAGAACTTCAAAGGGCATGCGCAGATT 660
Query 661 CTTGAAAAAGGAGGATACTCTTTGTTCACACCTCATTACATTACATGGTTTTGTCCTAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGAAAAAGGAGGATACTCTTTGTTCACACCTCATTACATTACATGGTTTTGTCCTAAA 720
Query 721 GATTATGTTTCTAGCAATCAATGTAAGTCTCAGTGTATAAACCAAGGGAGGTATTGTGCT 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 GATTATGTTTCTAGCAATCAATGTAAGTCTCAGTGTATCAACCAAGGGAGGTATTGTGCT 780
Query 781 CCTGACCCTGAACAAGACTTTGGTGATGGATACGATGGTAAAGACATTGTCTTCGAGAAC 840
||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 781 CCTGACCCTGAACAAGACTTTGGAGATGGATACGATGGCAAAGACATCGTTTTCGAGAA- 839
Query 841 T-TGAGACAGTTGTGTGTTCATAAAGTAGCTAAAGAGAATAACCGGTCTTGGGTTTGGTG 899
| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 840 TCTGAGACAGTTATGTGTTCATAGAGTAGCAAAAGAGAATAACCGGTCTTGGGTTTGGTG 899
Query 900 GGACTATGTGACTGATTTTCACATTAGATGTTCAATGAAGGAGAAGAAGTATAGCAAAGA 959
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 900 GGACTATGTGACTGATTTTCACATCAGGTGTTCAATGAAGGAGAAGAAGTATAGCAAAGA 959
Query 960 ATGTGCAGAGAGAGTTGTTGAATCTCTAGGTTTGCCACTTGACAAGATCAAGAAATGTAT 1019
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 960 ATGTGCTGAGAAAGTTGTTGAATCTCTCGGTTTGCCACTTGACAAGATCAAGAAATGCAT 1019
Query 1020 TGGTGATCCTGATGCTAATGTGGAGAATGAAGTTTTGAAAGCTGAGCAAGCACTTCAGGT 1079
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TGGTGATCCTGAAGCTGATGTGGAGAATGAAGTTTTGAAAGCTGAGCAAGCGCTTCAGGT 1079
Query 1080 AGGACAAGGTGACCGCGGAGATGTCACAATCTTGCCAACATTGATCGTCAACAATGCTCA 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGGACAAGGTGACCGCGGGGATGTCACAATCTTGCCAACATTGATCGTCAACAATGCTCA 1139
Query 1140 ATACCGCGGTAAACTTGAGAGAAATGCAGTACTTAAGGCTATATGTTCTGGATTCAAGGA 1199
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1140 ATACCGCGGTAAACTCGAGAGAAATGCAGTACTTAAGGCTATATGTTCAGGATTTAAGGA 1199
Query 1200 AAGAACCGAACCCGGG-ATCTGTCTAAGTGGAGATATTGAAACAAATGAATGTCTCGAAG 1258
|||||| ||| ||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1200 AAGAACTGAA-CCGGGAATCTGTCTAAGTGGAGATATCGAAACAAACGAATGTCTCGAAG 1258
Query 1259 CAAATGGAGGGTGTTGGGAGGACAAGAAGTCCAATGTAACAGCTTGCAAGGACACATTTA 1318
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1259 CAAATGGAGGGTGTTGGCAGGACATGAAGTCTAATGTAACAGCTTGCAAGGACACATTTA 1318
Query 1319 GAGGAAGAGTCTGTGAATGCCCTGTTGTGAATGGTGTACAGTATAAAGGAGATGGATATA 1378
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1319 GGGGAAGAGTCTGTGAATGCCCTGTTGTAAATGGTGTGCAGTATAAAGGAGATGGCTATA 1378
Query 1379 CATCATGTGAACCTTATGGCCCTGCAAGATGCTCGATTAACCAAGGAGGTTGCTGGTCTG 1438
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1379 CCTCATGTGAACCTTATGGCCCTGCCAGATGCTCGATTAATCAAGGAGGTTGCTGGTCTG 1438
Query 1439 AAACCAAAAAGGGCTTAACTTTCTCGGCTTGCTCGAACTTGGAGACATCGGGATGTCGCT 1498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 AAACCAAAAAGGGCTTAACTTTCTCCGCTTGCTCGAACTTGGAGACATCGGGATGTCGCT 1498
Query 1499 GCCCTCCAGGGTTTAAAGGAGATGGTCTTAAATGTGAAGACATTGATGAGTGTAAGGAGC 1558
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1499 GCCCTCCAGGGTTTAAAGGAGATGGTCTTAAATGTGAAGACATTGATGAATGTAAGGAAC 1558
Query 1559 AATCAGCTTGTCAATGTGATGGATGCAACTGTAAGAACAAATGGGGAGGCTTTGAATGCA 1618
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1559 AATCAGCTTGTCAATGTGATGGATGCAACTGTAAGAACAACTGGGGAGGCTTTGAATGCA 1618
Query 1619 AATGCTCTGGAAATCGTCTCTACATGAAAGAACAAGACACTTGTATTGAGAGAAGCGGAT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AATGCTCTGGAAATCGTCTCTACATGAAAGAACAAGACACTTGTATTGAGAGAAGCGGAT 1678
Query 1679 CAAGAATCGGATGGTTCCCTACATTTGTGATTCTAGCTGCAGTTGCAAGCATATGTGTAG 1738
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1679 CAAGAATCGGATGGTTCTTTACGTTTGTGATTCTAGCTGCAGTTGCAAGCATATGTGTAG 1738
Query 1739 GTGGTTACGTATTCTACAAGTATCGTCTCAGGTCTTATATGGATTCAGAAATCATGGCGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GTGGTTACGTATTCTACAAGTATCGTCTCAGGTCTTATATGGATTCAGAAATCATGGCGA 1798
Query 1799 TTATGTCTCAGTACATGCCATTAGAGAGCCAAAACACAACCGATCCAATGACTGGTGAAT 1858
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1799 TTATGTCTCAGTACATGCCATTGGAGAGCCAAAACACAACCGATCCAATGACCGGTGAAT 1858
Query 1859 CTCAACACCAACAGCTGAGATTAACTTCTGCAGCCTAA 1896
||||||| |||||||||||||||||||||||||| |||
Sbjct 1859 CTCAACAGCAACAGCTGAGATTAACTTCTGCAGCTTAA 1896
> Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267
Length=1860
Score = 1426 bits (772), Expect = 0.0
Identities = 1514/1864 (81%), Gaps = 83/1864 (4%)
Strand=Plus/Plus
Query 14 ATAAAGGAGCCACCTTGGCTCTGTTTCTAGCGTTGA-C-T-ATGGTGGTCAACGGAGTTT 70
|||||||| || |||||||||| | |||||||||| | | ||||||||||||| | ||
Sbjct 14 ATAAAGGAACCGTCTTGGCTCTGATACTAGCGTTGACCATGGTGGTGGTCAACGGTG-TT 72
Query 71 TC-GGGAGATTCATCGTTGAGAAGAGTAGCGTGACGATTCTAAACCCTTTGG-CAATGCG 128
|| ||||||| |||| |||||||||||| ||||| | || ||| | |||| |||| |
Sbjct 73 TCACCGAGATTCTTCGTGGAGAAGAGTAGCTTGACGGTACTTAACTC-TTGGAAAATG-G 130
Query 129 G-TCTAAGCACGACGCAGCCATTGCTAACTTCGGTGTTCCTAACTACGGTGGTTACATGA 187
| ||||||||||||| ||||| || ||||| || |||| |||| |||||||| |||||
Sbjct 131 GAGCTAAGCACGACGCGGCCATCGCAAACTTTGGCATTCCAAACTTCGGTGGTTTCATGA 190
Query 188 TCGGCTCCGTCGTTTACGCCGGTCAAGGAGCTTATGGATGTGACTCTTTTGACAAAACTT 247
||||||| ||||| ||||| || ||||| | ||||||||| |||||||| ||||||| |
Sbjct 191 TCGGCTCTGTCGTCTACGCAGGCCAAGGCGATTATGGATGCGACTCTTTCAACAAAACCT 250
Query 248 TCAAACCCAAATTC-CCTCGTCCTACCATTTTGATCATCGATCGTGGAGAGTGTTACTTT 306
||| ||| || || ||| ||| ||||| | |||| |||||||||| |||| |||||
Sbjct 251 TCACTCCC-AAGTCTCCTTATCCCACCATCCTCCTCATTGATCGTGGAGTGTGTAACTTT 309
Query 307 GCATTAAAGGTATGGAACGGTCAACAATCCGGTGTAGCAGCAGTT-TTAGTAGCTGATAA 365
|| || ||| ||||||| || ||||||||||| | ||| || ||| || |||| |||||
Sbjct 310 GCTTTGAAGATATGGAATGGGCAACAATCCGGAGCAGCGGCTGTTCTT-TTAGCAGATAA 368
Query 366 CGTCGATGAGCCATTGATAACAATGGATTCACCTGAGGAAT-CCAA-A-GAAGCTGATGA 422
| | | |||||||||| |||||||||||||||| ||||||| |||| | ||| | |||
Sbjct 369 CATTGTTGAGCCATTGTTAACAATGGATTCACCAGAGGAATCCCAAGATAAAGATCCTGA 428
Query 423 CTTTATAGAGAAACTCAACATTCCATCGGCTTTAATAGACTT--TTCTTTCGCCAATA-C 479
||||||||| ||| |||| || ||||||||||| || ||| ||||||| ||| |
Sbjct 429 CTTTATAGACAAAATCAAGATCCCATCGGCTTTGAT--CCTTCGCTCTTTCGGTGATAGC 486
Query 480 TCTCAAGCAA-GCTCTTAAGAA-AGGTGAGGAAGTAGTCCTGAAGATAGACTGGAGTGAG 537
|||||| || |||||||| || ||| ||||||||| || ||||||| || |||||||||
Sbjct 487 -CTCAAG-AATGCTCTTAA-AAGAGGCGAGGAAGTAATCTTGAAGATTGATTGGAGTGAG 543
Query 538 TCAT-TACCTCATCCGGATGAGAGAGTTGAGTATGAGCTATGGACTAACACGAACGATGA 596
|| | |||| | || ||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 544 TC-TATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCTAACACTAACGATAA 602
Query 597 GTGT-G-GTGCACGGTGTGATGAGCAGATGA-ATTTCGTAAAAAACTTCAAAGG-ACATG 652
||| | |||||| || || |||| || | ||||| |||| ||||| || || || |
Sbjct 603 ATGTGGTGTGCAC--TGCCATAAGCA-ATTAGATTTCATAAAGAACTTTAAGGGAAC-GG 658
Query 653 CGCAGATTCTTGAAAAAGGAGGATACT-CTTTGTTCACACCTCATTACATTACATGGTTT 711
| ||||||||||||||||| || || | ||||||||| ||||||||||||| | ||||||
Sbjct 659 CTCAGATTCTTGAAAAAGGTGGTTA-TACTTTGTTCAGACCTCATTACATTGCTTGGTTT 717
Query 712 TGTCCTAAAGATTATGTTTC-TAGCAATCAATGTAAGTCTCAGTGTATAAACCAAGGGAG 770
||||| ||||| || | | |||||| || |||||| |||||||| |||||||||||||
Sbjct 718 TGTCCCAAAGA-GCTGCTGCTTAGCAAGCAGTGTAAGACTCAGTGTCTAAACCAAGGGAG 776
Query 771 GTATTGTGCTCCTGACCCTGAA-CAAGACTTTGGTGATGGATACGATGGTAAAGACATTG 829
||||||||||||||||||| || |||||||||| |||||||| |||| |||||| | |
Sbjct 777 GTATTGTGCTCCTGACCCT-AAGCAAGACTTTGAAGATGGATATAATGGGAAAGACGTCG 835
Query 830 TCTT-CGAGAA-CTTGAGACAGTTGTGTGTTCATAAAGTAGCTAAAGAGAATAAC-CGGT 886
| || |||||| || ||||||||| |||||||||| ||||||||| ||||| ||| | |
Sbjct 836 T-TTACGAGAATCT-GAGACAGTTATGTGTTCATAGAGTAGCTAAGGAGAAGAACACT-T 892
Query 887 CTTGGGTTTGGTGGGACTATGTGACTGATTTTCACATTAGATGTTCAATGAAGGAGAAGA 946
|||||||||||||||| |||||||| |||||| |||| || ||||| |||||||||||||
Sbjct 893 CTTGGGTTTGGTGGGATTATGTGACAGATTTTAACATCAGGTGTTCTATGAAGGAGAAGA 952
Query 947 AGTATAGCAAAGAATGTGCAGAGAGAGTTGTTGAATCTCTAGGTTTGCCACTTGACAAGA 1006
| || |||| |||||| ||||||| || || |||||||| || ||| | ||||| ||||
Sbjct 953 AATACAGCAGAGAATGCGCAGAGACTGTCGTGGAATCTCTCGGGTTGTCTCTTGAGAAGA 1012
Query 1007 TCAAGAAATGTATTGGTGATCCTGATGCTAATGTGGAGAATGAAGTTTTGAAAGCTGAGC 1066
|||||||||| |||||||||||||||||| |||| |||||||||||| | ||||| || |
Sbjct 1013 TCAAGAAATGCATTGGTGATCCTGATGCTGATGTAGAGAATGAAGTTCTAAAAGCCGAAC 1072
Query 1067 AAGCACTTCAGGTAGGACAAGGTGAC-CGCGGAGATGTCACAATCTTGCCAACATTGATC 1125
|||| ||||| |||| |||| || ||||| | ||| |||||||| |||||||||||
Sbjct 1073 AAGCTTTTCAGTTAGGCCAAGA-GAATCGCGGGGTTGTTACAATCTTTCCAACATTGAT- 1130
Query 1126 G-TCAACAATGCTCAATACCGCGGTAAACTTGAGAGAAATGCAGTACTTAAGGCTATATG 1184
| |||||||||||||||| ||||||||||| ||||||| ||| || || |||||||||||
Sbjct 1131 GATCAACAATGCTCAATATCGCGGTAAACTGGAGAGAACTGCGGTGCTGAAGGCTATATG 1190
Query 1185 TTCTGGATTCAAGGAAAGAACCGAACCCGGGATCTGTCT-AAGTGGAGATATTGAAACAA 1243
||| ||||||||||||||||||||||| || ||| | || || |||||| || || |
Sbjct 1191 TTCAGGATTCAAGGAAAGAACCGAACCTTCAATATGTTTGAA-TGCAGATATAGAGACCA 1249
Query 1244 ATGAATGTCTCGA-AGCAAATGGAGGGTGTTGGGAGGACAAGAAG-TCCAATGTAACAGC 1301
|||||||||| | || ||||||||| |||||| | ||||| ||| || |||||||| ||
Sbjct 1250 ATGAATGTCTT-ATAGAAAATGGAGGATGTTGGCAAGACAA-AAGATCTAATGTAACGGC 1307
Query 1302 TTGCAAGGACACATTTAGAGGAAGAGTCTGTGAATGCCCTGTTGTGAATGGTGTACAGTA 1361
|||||||||||||||||| |||||||| ||||| ||||| ||| | ||||| || || ||
Sbjct 1308 TTGCAAGGACACATTTAGGGGAAGAGTATGTGAGTGCCCGGTTTTTAATGGGGTTCAATA 1367
Query 1362 TAAAGGAGATGGATATACATCATGTGAACCTTATGGCCCTGCAAGATGCTCGATT-AACC 1420
|||||||||||| ||||| || || |||||||||| ||||| ||||| || || |||
Sbjct 1368 TAAAGGAGATGGTTATACCTCCTGCAAACCTTATGGACCTGCTAGATGTTC-ATCGAAC- 1425
Query 1421 AA-GGAGGTTGCTGGTCTGAAACCAAAAAGGG-CTTAACTTTCTCGGCTTGCTCGAACTT 1478
|| ||||| |||||||||||||||| || ||| || ||||||||| ||||| || ||||
Sbjct 1426 AATGGAGGCTGCTGGTCTGAAACCAGAACGGGTCT-AACTTTCTCTGCTTGTTCAAACTC 1484
Query 1479 GGAGACATCGGGATGTCGCTGCCCTCCAGGGTTTAAAGGAGATGGTCTTAAATGTGAAGA 1538
|||||||| |||||||| || |||| ||| || ||||||||||| |||||||||||
Sbjct 1485 AGAGACATCAGGATGTCGTTGTCCTCTAGGCTTCCGTGGAGATGGTCTGAAATGTGAAGA 1544
Query 1539 CATTGATGAGTGTAAGGAGCAATCAGCTTGTCAATGTGATGGA-TGCAACTGTAAGAACA 1597
||| ||||| || || ||| ||||||||||||||||||||| | ||||| || |||||||
Sbjct 1545 CATCGATGAATGCAAAGAGAAATCAGCTTGTCAATGTGATG-ACTGCAAATGCAAGAACA 1603
Query 1598 AATGGGGAGGCTTTGAATGCAAATGCTCTGGA-AATCGTCTCTACATGAAAGAACAAGAC 1656
| |||||||| | |||||||||||| ||| | ||| || |||| ||||||||| |||||
Sbjct 1604 ATTGGGGAGGATATGAATGCAAATGTTCTA-ACAATAGTGTCTATATGAAAGAAGAAGAC 1662
Query 1657 ACTTGTATTGAGAGAAGC-G-G-ATCAAGAATCGGATGGTTCC-CTACATTTGTGATTCT 1712
||||||||||||||||| | | |||||||| | ||||||| | ||| ||||| ||||
Sbjct 1663 ACTTGTATTGAGAGAAGAAGTGGATCAAGAAGCAGATGGTTGTTC-ACAATTGTGGTTCT 1721
Query 1713 AG-CTGC-AGTTGCAAGCATATGTGTAGGTGGTTACGTATTCTACAAGTATCGTCT-CAG 1769
| | || | |||| | || | | |||||| ||| ||||||||||||| | ||| |||
Sbjct 1722 AATC-GCCA-TTGCGGGTATCTCTTTAGGTGCTTATATATTCTACAAGTACCATCTTCAG 1779
Query 1770 GTCTTATATGGATTCAGAAATCA-TG-GCGATTATGTCTCAGTACATGCCATTAGAGAGC 1827
||||| ||||||||||| || | || | ||||||||||||||||| ||| | || |||
Sbjct 1780 -TCTTACATGGATTCAGAGAT-AGTGTGT-ATTATGTCTCAGTACATACCACTCGATAGC 1836
Query 1828 CAAA 1831
||||
Sbjct 1837 CAAA 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5