BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31160.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336541 jgi|Araly1|336541|fgenesh1_pg.C_scaffold_1003106 830 0.0
> Ahg336541 jgi|Araly1|336541|fgenesh1_pg.C_scaffold_1003106
Length=558
Score = 830 bits (449), Expect = 0.0
Identities = 507/535 (95%), Gaps = 3/535 (1%)
Strand=Plus/Plus
Query 81 TTC-GGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGGATC 139
||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 25 TTCAGGAATTTCTCTACGGTGGGAAGAGTTGCTCAGTCTGTTCGTGTGACTTCGAAAATC 84
Query 140 TTCTTCTCCACCGGAGAATTGATTAGGGTTCTTCCTTATACTCGTT-CTAAAAGATTGAT 198
||||||||||| ||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 85 TTCTTCTCCACTGGAGAATTGATTAGGGTTCTTCCTTATACCCGTTCCT-CAAGATCCAT 143
Query 199 CTGTTCTACTCGTGCTGCTCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGC 258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CTGTTCTACTCGTGCTGCGCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGC 203
Query 259 TGACACCGGAGCTCCGACCATATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATAT 318
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 204 TGACACCGGAGCTCCAACCATATTTGACAAGATTATAGCAAAAGAGATTCCATCTGATAT 263
Query 319 TGTCTATGAAGATGAAAACGTTTTGGCATTCAGAGACATTAACCCTCAGGCTCCTGTTCA 378
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 264 TGTCTATGAAGATGCAAACGTTTTGGCATTCAGAGACATAAACCCTCAGGCTCCTGTTCA 323
Query 379 TGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGGCTGAACCAAG 438
|||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 324 TGTTTTGGTCATCCCCAAGTTGAGAGATGGCTTAACCACGCTTGGCAATGCTGAACCAAG 383
Query 439 ACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGG 498
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 384 ACACGTAGAGGTTCTTGGCCAACTTCTACACGCATCGAAGATTGTTGCTGAGAAAGAAGG 443
Query 499 AATCCTTGATGGGTTCCGTGTGGTTATCAACAACGGTGTTGAAGCCTGCCAATCTGTTTA 558
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 444 CATCCTCGACGGGTTCCGTGTGGTTATCAACAACGGTGTTGAAGCTTGCCAATCTGTTTA 503
Query 559 CCATCTTCATCTGCACGTCCTCGGAGGCCGACAGATGAAATGGCCACCCGGTTAA 613
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CCATCTTCATCTACACGTCCTCGGAGGCCGACAGATGAAATGGCCACCCGGTTAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5