BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31190.1 Length=1335 Score E Sequences producing significant alignments: (Bits) Value Ahg922594 jgi|Araly1|922594|scaffold_103875.1 1777 0.0 > Ahg922594 jgi|Araly1|922594|scaffold_103875.1 Length=1135 Score = 1777 bits (962), Expect = 0.0 Identities = 1066/1116 (96%), Gaps = 7/1116 (1%) Strand=Plus/Plus Query 114 GGAAACATGTCATTGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 173 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24 GGAAGCATGTCAATGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 83 Query 174 ATTTCAGGCCGGACAGT-GAACAGAACTTTCCGATATCGGTGTACGAGGATTTTGTCTAA 232 ||||| |||||||| | ||||||| ||||||| || ||||| ||| |||||||||||| Sbjct 84 TTTTCATGCCGGACA-TCAAACAGAAATTTCCGACATGGGTGTTCGACGATTTTGTCTAA 142 Query 233 TAGCTTCAAGTCCACAACGAGACTTCAAACCAAAGCTGTTCTGTCTGAGGTTTCTGATCA 292 |||||||||||||| | ||||||||||| |||||| || |||||||| |||||||||| Sbjct 143 CAGCTTCAAGTCCACTTCAAGACTTCAAACAAAAGCTCTTGTGTCTGAGATTTCTGATCA 202 Query 293 GACGCGA-TATCCCAGAATCGGCGCTAAAACCACCGGAACTATATCTCCGGCACACCTCC 351 ||||| | ||||| ||||||||||||||| |||||||||||||||| |||||||| |||| Sbjct 203 GACGC-ATTATCCTAGAATCGGCGCTAAATCCACCGGAACTATATCGCCGGCACATCTCC 261 Query 352 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 321 Query 412 AGCCAAGGAATATTACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 471 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 AGCCAAGGAATATCACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 381 Query 472 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 441 Query 532 AAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 591 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 AAGAAGGAGGTATTATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 501 Query 592 ATGGAACTACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCCGTCGGTGTTCTGT 651 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 502 ATGGAACAACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCTGTCGGTGTTCTGT 561 Query 652 ATCGTGGAAATCCCGCCGCTGCTTCTGTGGTAGAGTTTGTCGGTGGTCCGATGTGCTGGA 711 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 562 ATCGTGGAAACCCCGCCGCTGCTTCTGTGGTTGAGTTTGTCGGTGGTCCGATGTGTTGGA 621 Query 712 ACACTCGAACCTTTTCTGCAACTGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 771 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 622 ACACTCGAACCTTTTCTGCAACAGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 681 Query 772 ATGTCAGT-AAGACCGATGCTGTGGAGAGAGCACTTCTTATCACAGGGTTTGGTTATGAA 830 |||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 682 ATGTCAGTGAAG-CTGATGCTGTGGAGAGAGCACTTCTTATCACCGGGTTTGGTTATGAA 740 Query 831 CATGATGATGCATGGAGCACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 890 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 741 CATGATGATGCATGGAGTACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 800 Query 891 GGAGTGCGAAGACTCGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCG 950 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 801 GGAGTGCGAAGACTCGGTGCTGCAGCAGTTGACATGTGTCATGTGGCACTTGGGATTGCG 860 Query 951 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 861 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 920 Query 1011 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 1070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 980 Query 1071 TCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGCTTCTGGAAAGAATTGCACCCGCA 1130 ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 981 TCTGTTTTGGTTTCCAACGGCGTTCTTCACTCCAAGCTTCTGGAGAGAATTGCACCCGCA 1040 Query 1131 ACTGAGAATTTGAAGTCGAAAGGAATCGATTTCTCGTTATGGTTCAAACCGGAAGATTAT 1190 |||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||| Sbjct 1041 ACTGAGAATTTGAAGTTGAAAGGAATCGATTTCTCGCTGTGGTTTAAACCGGAAGATTAT 1100 Query 1191 CATACAGAGCTTTAAGACTTGTTCAAGAAAGGTATA 1226 |||||||||||||||||||||||||| | ||||||| Sbjct 1101 CATACAGAGCTTTAAGACTTGTTCAA-AGAGGTATA 1135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49941021270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5