BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31280.1 Length=3343 Score E Sequences producing significant alignments: (Bits) Value Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1 4752 0.0 Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610 2348 0.0 Ahg935303 jgi|Araly1|935303|scaffold_403291.1 135 2e-30 > Ahg473645 jgi|Araly1|473645|fgenesh2_kg.1__3599__AT1G31280.1 Length=3255 Score = 4752 bits (2573), Expect = 0.0 Identities = 3048/3272 (93%), Gaps = 53/3272 (2%) Strand=Plus/Plus Query 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGT-----------A-GA 114 ||||||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 1 ATGGAGAGAGGTGGTTATCGAGGTGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGGAGGA 60 Query 115 GGTGGCCGTGGTTAT------GGC---GGAGGCGGAGGAGGAGGAGAACAAGGTCGTGAT 165 || |||||||| ||| ||| ||||| ||||||||||||||||||||||||| | Sbjct 61 GGAGGCCGTGGCTATGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGAACAAGGTCGTGGT 120 Query 166 CGTGGCTA---CGGC---GGCGGAGAACAAGGTCGTGGTCGTGGCTCAGAGCGAGGCGGC 219 |||||||| |||| |||||||||||||||||||||||||| ||||| || ||||| Sbjct 121 CGTGGCTATGGCGGCGGAGGCGGAGAACAAGGTCGTGGTCGTGGTTCAGATCGTGGCGGT 180 Query 220 GGAAATCGTGGTCAAGGTCGTGGTGAACAACAGGATTTTCGAAGCCAGAGTCAGCGGGGA 279 ||||||||||| || || ||||||||||||||||||||||| |||||||||||| ||||| Sbjct 181 GGAAATCGTGGGCAGGGACGTGGTGAACAACAGGATTTTCGTAGCCAGAGTCAGTGGGGA 240 Query 280 CCTCCGCCAGGTCACGGTGGCCGTGGGACGACGCAGTTC-CAACAGCCTCGACCACAGGT 338 |||||||| ||||||||||| ||||||||| | | | || ||||| |||||||||||||| Sbjct 241 CCTCCGCCTGGTCACGGTGGTCGTGGGACG-C-C-G-TCGCAACAACCTCGACCACAGGT 296 Query 339 GGCTCCGCAGCCGTCGCAGGCTCCGGCGAGTTATGCCGGTTCAGTAGGAGGAGTCGCTGG 398 || ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| Sbjct 297 GGTTCCGCAGCCGTCGCAAGCTCCGGTTAGTTATGCCGGTTCGGTAGGAGGAGTCGCTGG 356 Query 399 TAGAGGCGCGTGGGGTCGTAAGCCACAGGTTCCGTCTGATTCGGCTTCTCCGTCCACCAG 458 |||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| | Sbjct 357 TAGAGGCGCGTGGGGTCGTAGGCCACAGGTTTCTTCTGATTCAGCTTCTCCGTCCA-C-- 413 Query 459 CACCACCGTGGTTTCTGAACCCGTTCGTGTAGCTGAAGTTATGAATCTGAAGCCATCGGT 518 |||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||| Sbjct 414 CACCGTCGTGGTTTCTGAGCCCGTTCGTGTAGCTGAAGTTATGAATCCGAGGCCATCGGT 473 Query 519 GCAAGTTGCGACTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT 578 |||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 474 GCAAGTTGTGTCTTCTGATAGGAAAGAACCGATGAAGCGACCTGATAGAGGCGGTGTTGT 533 Query 579 GGCTGTGCGGCGTGTTAATCTATATGTGAATCATTATAAAGTGAATTTCAATCCTGAAAG 638 |||||||||||| |||||||| ||||||||||||| || |||||||||| |||| ||||| Sbjct 534 GGCTGTGCGGCGGGTTAATCTCTATGTGAATCATTTTAGAGTGAATTTCGATCCGGAAAG 593 Query 639 TGTTATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAG 698 ||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| Sbjct 594 TGTCATAAGACATTATGATGTTGAAATCAAAGGAGAAAATCCTACGAAGAAGATTTCGAG 653 Query 699 GTTTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTT 758 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 654 GTTTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGATAATCCTGATGAGTTTCCCTT 713 Query 759 AGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGG 818 |||||||||||||||||||||||||||||||||||||| || | ||| || |||||||| Sbjct 714 CGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGCCTACGGG 773 Query 819 GTCATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCA 877 |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 774 GTCATATAAGGTGGAGT-TCCCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACATTCA 832 Query 878 CTATCAAACAGGTGAATGTGCTGAAGCTAGGTGACTTGAAAGAGTACATGACAGGGAGAT 937 ||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||| | Sbjct 833 TTATCAAACAGGTGAATGAGCTTAAGCTACGCGACTTGAAAGAGTACATGACAGGGAGTT 892 Query 938 CGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATCCTT 997 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 893 CGTCTTGCAATCCGCGTGATGTGTTGCAAGCAATGGATGTTGTGATGAAGGAGCATCCTT 952 Query 998 CCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATGAAG 1057 | ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct 953 CAAAGTGTATGATCACTGTCGGTAAGAGCTTTTTCACTCGTGAAACTGAGCGAGATGAAG 1012 Query 1058 ATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAGCAC 1117 | ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1013 ACTTTGGCTTCGGGGTTGCAGCTGCTAAAGGGTATCGCCACACTCTGAAGCCCACAGCAC 1072 Query 1118 AAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGGTCA 1177 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1073 AAGGTTTGTCTTTGTGTTTGGACTACTCAGTGTTGGCGTTCCGCAAAGCAATGTCGGTCA 1132 Query 1178 TTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-AGGC 1231 ||||||||||||||||||||||||||||| | |||||||||||||||| | | |||| Sbjct 1133 TTGAATACCTGAAGTTGTACTTTAACTGGCCCGATATGCGTCAGTTTAGGAATTGTAGGC 1192 Query 1232 GTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACAAGC 1291 ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1193 GTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACAAGC 1252 Query 1292 AGAAACTCACCATTGTAGGGCTGAGTATGCAAAACACAAAAGACATCAAATTTGATCTTA 1351 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 1253 AGAAACTCACCATTGTAGGGCTGAGTATGCAAGACACAAAAGACATCAAATTCGATCTTA 1312 Query 1352 TTGATCAAGAGGGAAACGAGCCGCCAAGGAAGACGTCCATTGTTGAGTATTTCAGGATAA 1411 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1313 TTGATCAAGAGGGAAACGAGCCACCAAGGAAAACGTCCATTGTTGAGTATTTCAGGATAA 1372 Query 1412 AGTATGGAAGACACATTGTTCACAAGGATATACCTTGCTTGGATTTGGGAAAAAACGGTA 1471 ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 1373 AGTATGGAAGAGACATTGTTCACAAAGATATTCCTTGCTTGGATTTGGGGAAAAACGGTA 1432 Query 1472 GGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATATATCCAAAGG 1531 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct 1433 GGCAAAATTTTGTCCCCATGGAGTTCTGCGACTTGGTTGAGGGACAGATTTATCCAAAGG 1492 Query 1532 ATAACTTGGATAAAGATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGGTCAATCCACAAC 1591 || |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 1493 ATGACTTGGATAAAGATTCAGCTTTGTGGTTAAAAAAGTTGTCGCTAGTCAATCCACAAC 1552 Query 1592 AAAGGCAGAGGAATATAGATAAGATGATAAAGGCTCGTAATGGACCGAGCGGTGGTGAAA 1651 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 1553 AAAGGCAGAGGAATATAGATAAGATGATAAAGTCTCGTAATGGACCGAGCGGTGGAGAAA 1612 Query 1652 TCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGTGGAAGGTCGTGTAC 1711 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 TAATTGGAAACTTCGGATTGAAAGTGGATACAAACATGACACCGGTGGAAGGTCGTGTAC 1672 Query 1712 TCAAGGCTCCATCATTGAAGTTGGCAGAGAGAGGGAGAGTTGTGCGTGAGGAACCCAACC 1771 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1673 TCAAGGCTCCAACATTGAAGTTGGCAGAGAGAGGGAGAGCTGTGCGTGAGGAACCCAACC 1732 Query 1772 CGAGACAGAACAACCAATGGAACCTTATGAAGAAGGGAGTCACAAGGGGATCTATAGTCA 1831 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1733 CAAGACAGAACAACCAATGGAACCTTATGAAGAAGGGAGTCACAAGGGGATCTATAGTCA 1792 Query 1832 AGCATTGGGCTGTACTTGACTTCACTGCATCCGAGAGATTTAACAAGATGCCTAATGACT 1891 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1793 AGCATTGGGCTGTACTTGACTTCACCGCATCCGAGAGATTTAACAAGATGCCTAATGACT 1852 Query 1892 TTGTGGATAACCTTATTGATCGTTGTTGGAGACTTGGGATGCAGATGGAGGCTCCTATCG 1951 ||||||||||||| || || |||||||||||||||||||||||||||||||||||||| | Sbjct 1853 TTGTGGATAACCTCATCGACCGTTGTTGGAGACTTGGGATGCAGATGGAGGCTCCTATAG 1912 Query 1952 TTTACAAAACATCGAGAATGGAAACACTTTCTAATGGTAATGCTATTGAGGAATTGCTTC 2011 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1913 TTTACAAAACATCGAAAATGGAAACACTTTCTAATGGTAATGCTCTTGAGGAATTGCTTC 1972 Query 2012 GATCCGTGATAGATGAAGCTTCTCGTAAGCATGGTGGGGCTCGTCCAACTCTTGTTCTGT 2071 |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1973 GATCTGTGATAGATGAGGCTTTTCGTAAGCATGGTGGGGCTCGTCCAACTCTTGTTCTGT 2032 Query 2072 GTGCTATGTCTCGGAAAGACGATGGCTATAAGACTCTGAAATGGATAGCCGAGACCAAAC 2131 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2033 GTGCTATGTCTCGGAAGGACGATGGCTACAAGACTCTGAAATGGATAGCCGAGACCAAAC 2092 Query 2132 TTGGTCTGGTGACTCAGTGTTTCTTGACTGGTCCTGCCACTAAAGGAGGTGATCAGTACC 2191 ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 2093 TTGGTCTTGTGACTCAGTGTTTCTTGACCGGTTCTGCCACTAAAGGAGGTGATCAGTACC 2152 Query 2192 GGGCAAATCTTGCCCTCAAGATGAACGCAAAGGTTGGTGGAAGCAATGTCGAGCTT-ATG 2250 ||||||||||||||||||||||||| |||||||||||||||||||| || ||| || ||| Sbjct 2153 GGGCAAATCTTGCCCTCAAGATGAATGCAAAGGTTGGTGGAAGCAACGTTGAG-TTGATG 2211 Query 2251 GATACTTTCTCTTTCTTCAAAAAAGAGGATGAGGTCATGTTCATTGGTGCTGATGTCAAT 2310 ||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2212 GATACGTTCTCTTTTTTCCAAAAAGAGGATGAGGTCATGTTCATTGGTGCCGATGTCAAT 2271 Query 2311 CATCCCGCTGCTCGGGACAAGATGAGCCCGTCCATTGTTGCTGTTGTGGGAACTCTTAAC 2370 ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 2272 CATCCTGCTGCTCGGGACAAGATGAGCCCGTCTATTGTTGCTGTTGTGGGTACTCTAAAC 2331 Query 2371 TGGCCTGAAGCAAATCGCTATGCAGCTAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAA 2430 ||||||| ||| || || |||||||||||||||||||||||||||||||| |||||||| Sbjct 2332 TGGCCTGCAGCTAACCGTTATGCAGCTAGAGTCATTGCCCAGCCTCACCGTAAAGAGGAG 2391 Query 2431 ATACAAGGATTTGGCGACGCTTGTTTGGAGCTTGTCAAAGCTCATGTTCAGGCCACAGGG 2490 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 2392 ATACAAGGATTTGGCGATGCTTGCCTGGAGCTTGTCAAAGCTCATGTTCAGGCCACCGGG 2451 Query 2491 AAACGGCCTAACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATG 2550 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2452 AAACGACCTAACAAGATTGTGATATTCCGTGATGGTGTCAGCGACGCTCAGTTCGATATG 2511 Query 2551 GTTCTCAATGTGGAGTTGCTTGATGTTAAGCTAACTTTTGAGAAGAATGGTTACAATCCA 2610 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2512 GTTCTCAATGTGGAGTTGCTTGATGTTAAGCTGACTTTTGAGAAGAATGGTTACAATCCA 2571 Query 2611 AAGATAACGGTAATCGTAGCCCAGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAAT 2670 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2572 AAGATAACGGTAATCGTAGCCCAGAAACGCCATCAAACCCGTTTCTTCCCTGCCACAAGC 2631 Query 2671 AATGATGGAAGTGATAAGGGCAATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTTATT 2730 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2632 AATGATGGAAGTGATAAAGGCAATGTGCCTTCAGGTACGGTCGTTGATACTAAAGTCATT 2691 Query 2731 CACCCGTATGAGTATGATTTCTACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAA 2790 |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| Sbjct 2692 CACCCGTATGAGTATGATTTCTACATCTGCAGTCACCATGGAGGGATCGGGACAAGCAAA 2751 Query 2791 CCGACTCATTACTACACTCTTTGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAG 2850 ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 2752 CCGACTCATTACTACACCCTTTGGGACGAACTTGGATTCACTTCAGATCAGGTTCAGAAG 2811 Query 2851 CTCATCTTCGAGATGTGCTTCACTTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCG 2910 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2812 CTCATCTTTGAGATGTGCTTCACTTTCACTCGCTGCACCAAACCTGTCTCTCTTGTTCCT 2871 Query 2911 CCGGTGTATTATGCTGACATGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCT 2970 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 2872 CCGGTGTATTATGCTGACATGGTTGCCTTTAGAGGAAGGATGTACTACGAGGCAAGCTCT 2931 Query 2971 CGTGAGAAGAACTTTAAGCAGCCGCGGGGAGCGTCAACCTCTGCTGCTTCGCTTGCCTCT 3030 || ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||| Sbjct 2932 CGAGAGAAGAACTTTAGGCAGCCGCGGGGAGCGTCTACCTCAGCTGCTTCGCTTGCCTCT 2991 Query 3031 TCATTATCTTCTCTTACAATTGAGGACAAAGCGATTTTCAAGCTGCATGCAGAGCTTGAG 3090 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 2992 TCATTATCTTCTCTTACAGTTGAGGACAAAGCGATATTCAAGCTGCATGCAGAGCTTGAG 3051 Query 3091 AATGTTATGTTCTTCGTCTGAAGAAGAGAGTGAGTTTCTTTTGTGTTTTGGGTCTCAAGC 3150 || ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 3052 AACGTTATGTTCTTTGTCTGAAGAAGAGAGTAAGTTT-TTTTGTGTTTTGGGTCTCAAGC 3110 Query 3151 TGAACTTAAACCTATATTCGAAATCGGAACGCCCCAATAACGCAGTTTTAACTCCTTTTT 3210 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3111 TGAACTT--A---ATATTCGAAATCGGAACGCCCCAATAACGCAGTTTTAACTCCTTTTT 3165 Query 3211 TCTGGTAGAAAGGAGTTTGTGCGTGAATCTAATTGGGTTTTTCGTAGTGTGTTTCTTTCT 3270 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 3166 TCTGGTAGAAAGGAGTTTGTGCGTGAATCTAATTGGGTTTTTCGCAGTGTGTTTATTTCT 3225 Query 3271 TTTTGGTTTTGGTGTGTTGAAACGAATTTGTA 3302 |||||||| |||||||||||||||||||||| Sbjct 3226 TTTTGGTT--GGTGTGTTGAAACGAATTTGTA 3255 > Ahg913356 jgi|Araly1|913356|Al_scaffold_0001_3610 Length=3333 Score = 2348 bits (1271), Expect = 0.0 Identities = 2209/2647 (83%), Gaps = 124/2647 (5%) Strand=Plus/Plus Query 530 CTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT-GGC-TGTGCG 587 ||||||||| |||||||||||||||||| ||||||||||| | || || || ||||| Sbjct 746 CTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGG-TG-GTAGTAAGCTTGTGCA 803 Query 588 GCGTGTTAATCTATATGTGAATCATTAT-AAAGTGAATTTCAATCCTGAAAGT----GT- 641 || || ||||| | ||| ||||||| | || |||| |||| | |||||||| || Sbjct 804 ACGCGTAAATCTCTCTGTCAATCATT-TCAATGTGAGTTTCCCTTCTGAAAGTGAAAGTG 862 Query 642 T-ATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAGGT 700 | ||||| || || |||||||| ||||||||||||| |||| || ||| | || || | Sbjct 863 TCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATATCAAGAT 922 Query 701 TTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTTAG 760 ||||||||||||||| | || ||||||||||| |||||||||||| |||||||||| | Sbjct 923 ATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTTCCCTTCG 982 Query 761 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGGGT 820 ||||||||||||||||||||||||||||||||||||| || | ||| || |||| || | Sbjct 983 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTCTACAGGTT 1042 Query 821 CATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCACT 879 |||| |||||||||| | ||| ||||||| |||||||||| |||||||||||| ||||| Sbjct 1043 CATATAAGGTGGAGT-TCCCTGAAACTGATGAGATGAGAGCTCGAAGCTATACATTCACC 1101 Query 880 ATCAAACAGGTGAATG-T--GCTGAAGCTAGGTGACTTGAAAGAGTACATGACA-GGG-A 934 |||||||||||||||| | ||| |||||| |||||||| |||| ||||| | | ||| | Sbjct 1102 ATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT-A-AGGGGAA 1159 Query 935 GATCGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATC 994 | || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1160 GTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAACATC 1219 Query 995 CTTCCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATG 1054 |||| ||| ||||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 1220 CTTCAAAGCGTATGATGACTGTTGGTAAAAGCTTTTTCACTC--G----TGAGCCAGATG 1273 Query 1055 AAGATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAG 1114 |||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1274 AAGACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAGCCCACAG 1333 Query 1115 CACAAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGG 1174 ||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||| Sbjct 1334 CACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTTTTGGCATTCCGCAATGCAATGTCGG 1393 Query 1175 TCATTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-A 1228 ||||||| |||||||||||||||||| |||||| |||||||||||||||| | | | Sbjct 1394 TCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAGGAATTGTA 1453 Query 1229 GGCGTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACA 1288 |||||||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||| Sbjct 1454 GGCGTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTTAACCATCGGAAGAACA 1513 Query 1289 AGCAGAAACTCACCATTGTAGGGCTGAGT-ATGCAAAACACAAAAGACATCAAATTTGAT 1347 ||||||||||||||||||||||| ||||| | | | ||||||||||| |||| ||| ||| Sbjct 1514 AGCAGAAACTCACCATTGTAGGGTTGAGTGA-GTACAACACAAAAGATATCACATTCGAT 1572 Query 1348 CTTATTGATCAAGAGGGAAACGAGCCGCCAAGG-AAGACGTCCATTGTTGAGTATTTCA- 1405 ||||||||||| | |||| ||||||| |||||| ||| ||||||||| ||||||||| Sbjct 1573 CTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAG-TATCCATTGTTAAGTATTTCAT 1631 Query 1406 GGATAAAGTATGGAAGACACAT-TGTTCACAAGGATATACCTTG-CTTGGATTT-GGGAA 1462 ||| ||||||||||| | |||| ||| |||||||||| ||||| || | ||| ||||| Sbjct 1632 GGA-AAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCTAAG-TTTGGGGAA 1688 Query 1463 AAAACGGTAGGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATAT 1522 |||| ||| ||||||||| ||| |||||||| || ||| ||||||| ||||| ||||| | Sbjct 1689 AAAA-GGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGGGCAGATTT 1747 Query 1523 ATCCAAAGGATAACTTGGATAAAG--ATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGGT 1580 ||||||| || || || || | | ||||||||| || ||||| | ||||| || || Sbjct 1748 ATCCAAAAGAAAAATT-GA-AGGGTAATTCAGCTTCCCGGTTAAAACACTTGTCCCTTGT 1805 Query 1581 CAATCCACAACAAAGGCA-GAGGAATATAGATAAGATGATAAAGGC-TCGTAATGGACCG 1638 ||||||||||| |||| | || ||||||||| || |||||||| || | | ||||||| Sbjct 1806 CAATCCACAACGAAGGAAGGA-GAATATAGAAAATATGATAAA-GCTTAGGGATGGACCA 1863 Query 1639 AGCGGTGGTGAAATCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGTG 1698 |||||||| || |||||||| || |||||| ||||||||| ||||||||||||| ||||| Sbjct 1864 AGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACATGACAACGGTG 1923 Query 1699 GAAGGTCGTGTACTCAAGGCTCCAT-CATTGAAGTTGGCAGA-GAG-AGGGAGAGT--TG 1753 ||||||||||||||||||||||| | || ||| |||| | || || | ||| | | || Sbjct 1924 GAAGGTCGTGTACTCAAGGCTCC-TACACTGATGTTGACTGATCAGAAAGGA-AATCCTG 1981 Query 1754 TGC-GTGAGGAACCCAACCCGAGACAGAACAACCAATGGAACCTTATGAA-GAAGGGAGT 1811 | | ||||||| | |||| | ||||||| ||||||||||||| || ||| |||| Sbjct 1982 T-CACTGAGGAA--C--CCCG-CA-AGAACAATCAATGGAACCTTA-CAATAAAGCGAGT 2033 Query 1812 CACAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACTGCATC--CG-A--- 1865 |||| ||| || | |||||||||||||||||| ||||| ||||| || || | | Sbjct 2034 TACAAAGGGTTCAAAAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAGAAGCC 2093 Query 1866 G-AGATTTAACAAGATGCCTAATGACTTTGTGGA-TAACCTTATTGATCGTTGTTGGAGA 1923 | | | || ||||||||||| || ||||||| || || || | || ||||||| ||| Sbjct 2094 GCACAATT-ACAAGATGCCTGATAACTTTGTTGAGGAA-CTCACTGCGCGTTGTTCCAGA 2151 Query 1924 CTTGGGATGCA-GATGGAGGCTCCTATCGTTTACAAAACATCGAGAATGGAAACACTTTC 1982 ||||||||| | | ||||| |||||||||| |||||||| || ||||| || ||||| Sbjct 2152 CTTGGGATG-ACGTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATACGCTTTC 2210 Query 1983 TAATGGTAATGCTATTGAGGAATTGCTTCGATCCGTGATAGATGAAGCTTCT-CGTAAGC 2041 ||||||||||| | ||||||||||||||||||||||||| ||||| |||| | | ||| | Sbjct 2211 TAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TACTTAA-C 2268 Query 2042 ATGGTGGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAAGACGATGGCTATA 2101 | | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| | Sbjct 2269 -T-ATCGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGTCGATGGCTACA 2326 Query 2102 AGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACTG 2161 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2327 AGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACCG 2386 Query 2162 GTCCTGCCACTAAAGGAGGTGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAACGCAA 2221 || |||| | || ||||||||||||||| ||||||||| ||||||||||| ||||||| Sbjct 2387 GTTCTGCGAATAGGGGAGGTGATCAGTACTTGGCAAATCTCGCCCTCAAGATAAACGCAA 2446 Query 2222 AGGTTGGTGGAAGC-AATGTCGAGCTTATGG---A-TACTTTCTCTTTCTTCAAAAAAGA 2276 |||||||||||| | || || ||||| ||| | || ||||||||||||||| |||| Sbjct 2447 AGGTTGGTGGAA-CGAACGTGGAGCTGGTGGACAATTA-TTTCTCTTTCTTCAATGAAGA 2504 Query 2277 GGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCGGGACAAGATGAG 2336 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2505 AGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCACGACAAGATGAG 2564 Query 2337 CCCGTCCATTGTTGCTGTTGTGGGAACTCTTAACTGGCCTGAAGCAAATCGCTATGCAGC 2396 || ||||||||||||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 2565 TCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAGCTAACCGCTACGCAGC 2624 Query 2397 TAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAAATACAAGGATTTGGCGACGCTTGTTT 2456 |||||||| || ||| ||||||| ||||| || |||||||| ||||| || |||| || Sbjct 2625 TAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGTTTGGTGAAACTTGCTT 2684 Query 2457 GGAGCTTGTCAAAGCTCATGT-TCAGGCCAC-AGGGAAACGGCCTAACAAGATTGTGATA 2514 ||||||||||| |||||| | | | ||||| | | ||||| |||||||||||||||||| Sbjct 2685 AGAGCTTGTCAATGCTCAT-TCTAATGCCACCAAG-AAACGACCTAACAAGATTGTGATA 2742 Query 2515 TTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTGA- 2573 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| | || Sbjct 2743 TTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAATGTGGAGTTACA-GAA 2801 Query 2574 TGTTAAGCTA-ACTTTTGAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAGCCC 2632 ||||||| | |||||| | |||| || || ||||| |||||||||||| || || | Sbjct 2802 TGTTAAGG-ACACTTTTAAAAAGATTGAATATAATCCGTTGATAACGGTAATTGTGGCAC 2860 Query 2633 AGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAATAATGATGGAAGTGATAAGGGCA 2692 |||| ||||||||||||||||||||||| ||||||| |||||| ||| || || Sbjct 2861 AGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAAGCAATGAT--AAG-GA------CA 2911 Query 2693 ATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTT-ATTCACCCGTATGAGTATGATTTC 2751 |||||| |||||||||||| |||||||| |||| | |||||||| | ||||||||||||| Sbjct 2912 ATGTGCTTTCAGGTACGGTCGTTGATAC-AAAGATCATTCACCCATTTGAGTATGATTTC 2970 Query 2752 TACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAACCGACTCATTACTACACTCTT 2811 || ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 2971 TATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACTCATTACTATGTTCTG 3030 Query 2812 TGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAGCTCATCTTCGA-GATGTGCTT 2870 | |||||| | || |||| ||||||||| | ||||||||||| || || | ||||||| Sbjct 3031 TACGACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCATATTTGACG-TGTGCTT 3089 Query 2871 CAC-TTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCGCCGGTGTATTATGCTGACA 2929 ||| ||| ||||||||||||||||| ||| |||| ||||| || || | ||||||||||| Sbjct 3090 CACGTTT-ACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGTTTCTTATGCTGACA 3148 Query 2930 TGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCTCGTG-AGAAGAACTTTAAG 2988 || ||||| |||||||||| ||||| |||||||||||| | || ||||||||| |||| Sbjct 3149 AGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTA-TGGAGAAGAACTCTAAG 3207 Query 2989 CAGCCGCGGGGAGCGTCAAC--CT-CTGCTGCTTCGCTTGCCTCTTCATTATCTTCTCTT 3045 ||| |||| |||||||| | || ||||||||||| |||||||||||| |||||||| Sbjct 3208 CAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTCATCCTCTTCTCTC 3267 Query 3046 ACAATTGAGGACAAAGCGATTTTCAA-GCTGCATGCAGAGCTTGAGAATGTTATGTTCTT 3104 ||| | |||||||||| ||| ||||| | | || ||||| ||||||| ||||||||| Sbjct 3268 ACAGTGGAGGACAAAGAGATCTTCAAAGTT-CACACAGAGATTGAGAACAATATGTTCTT 3326 Query 3105 CGTCTGA 3111 ||||||| Sbjct 3327 CGTCTGA 3333 Score = 84.2 bits (45), Expect = 6e-15 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGTGGC 120 |||||| |||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGC 54 > Ahg935303 jgi|Araly1|935303|scaffold_403291.1 Length=215 Score = 135 bits (73), Expect = 2e-30 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 325 CCTCGACCACAGGTGGCTCCGCAGCCGTCGCAGGCTCCGGCGAGTTATGCCGGTTCAGTA 384 ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||| Sbjct 142 CCTCGACCACATGTGGTTCCGCAGCCGTCGCAAGCTCCGGTTAGTTATGCCGGTTCAGTA 83 Query 385 GGAGGAGTCGCTGGTAGAGGCGCGTGGGGTCGTA 418 ||||||||||||||||||||||| || ||||||| Sbjct 82 GGAGGAGTCGCTGGTAGAGGCGCATGAGGTCGTA 49 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 126198912068 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5