BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31330.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg473640 jgi|Araly1|473640|fgenesh2_kg.1__3594__AT1G31330.1 1362 0.0 > Ahg473640 jgi|Araly1|473640|fgenesh2_kg.1__3594__AT1G31330.1 Length=919 Score = 1362 bits (737), Expect = 0.0 Identities = 887/953 (93%), Gaps = 36/953 (4%) Strand=Plus/Plus Query 1 AAGAATCTAAAGCTCCTCCCATAAGTCTTCTCTCCACACTTCACCCAAA-ACTCCAGAAC 59 ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 1 AAGAATCTAAAGCTCCTCCCATAAGTCCTCTCTCCACACTTCACCCAAAGA-TCCAGAAC 59 Query 60 CCTAGAATTCGAAATCTCCAAAGAACCCGACAAAGCGCCATGTCGCTCACTATCCCGGCG 119 |||||||||||||| |||| |||||||||| ||||||| ||||||||||| |||||| || Sbjct 60 CCTAGAATTCGAAACCTCC-AAGAACCCGA-AAAGCGCGATGTCGCTCACAATCCCGACG 117 Query 120 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 AATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCC 177 Query 180 GCAAGATTCGTCTGCTCCGATGACAAATCCTCCTCCTCCACACCTCAATCCATGAAAGCT 239 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 178 GCAAGATTCGTCTGCTCCGATGACAAA---TCCTCCTCCACACCGCAATCCATGAAAGCT 234 Query 240 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCTATGCCAGCTGTCGCT 299 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 235 TTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCGATGCCAGCTGTCGCT 294 Query 300 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAA 354 Query 360 CAGATCAAGAAGCTTGAATCTTCTCTTAAGCTCTACGCTCCTGAATCTGCCCCTGCTCTT 419 |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 355 CAGATCAAGAAGCTTGAATCATCTCTTAAGCTTTACGCTCCTGAATCTGCTCCTGCTCTT 414 Query 420 GCTCTCAATGCTCAGATCGAGAAAACCAAACGCAGGTTCGACAACTACGGGAAGTACGGA 479 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 415 GCTCTTAATGCTCAGATCGAGAAAACCAAACGCAGGTTTGACAACTACGGGAAGTACGGA 474 Query 480 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATAGTGAACGGAGACCAGCGGCATTGG 539 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 475 TTGTTATGCGGGTCAGACGGTTTACCGCACTTGATTGTGAATGGAGACCAGCGGCATTGG 534 Query 540 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 GGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTT 594 Query 600 GGAAGAAGCTACTTAATAGCTATTAGTGGTGAGAAGAAACCCGCGATGAAAGAGATCATC 659 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 595 GGAAGAAGCTATTTAATAGCTATTAGTGGTGATAAGAAACCCGCGATGAAAGAGATCATC 654 Query 660 ATCGATGTTCCTTTGGCTAGTCGGATCATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 719 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 655 ATCGATGTTCCTTTGGCTAGTCGGATAATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCC 714 Query 720 TACAGAGAGTTTCTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAAGGGAACTTGTTT 779 |||||||||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 715 TACAGAGAGTTTGTCAATGGTGATCTCATTGCTAAGGATGTTTAAAAA------T-GTTA 767 Query 780 TCTGCTTTTGTGTTACTCTCTCTAATCTCTTTGTTTTCCATTGTACTTATTGAAAAACAA 839 | |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 768 --------------A-TCTCTCTAATCTCTATGTTTTCCATTGTACCTATTGAAAAACAA 812 Query 840 TGCATTGTCGAAAACCTTATAAAATTTGGATTGCGCAAGTA-GAAAGAATTATGGCTAAA 898 ||||||||||||||| || ||||||||||||||||||| | |||||||| ||||||||| Sbjct 813 TGCATTGTCGAAAACTTT-TAAAATTTGGATTGCGCAATTTCGAAAGAATCATGGCTAAA 871 Query 899 ATGGTGATTGACAGATTGTGATTTTGCGGTCTAGTGATTGCTATGTGAAGCTC 951 | |||||||| ||| |||||||||| ||||||||||| |||||||||| Sbjct 872 AAGGTGATTGT--GATC---ATTTTGCGGTGTAGTGATTGCTCTGTGAAGCTC 919 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5