BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31350.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922640 jgi|Araly1|922640|scaffold_103921.1 1799 0.0
> Ahg922640 jgi|Araly1|922640|scaffold_103921.1
Length=1198
Score = 1799 bits (974), Expect = 0.0
Identities = 1120/1192 (94%), Gaps = 4/1192 (0%)
Strand=Plus/Plus
Query 91 aaCTGAAACGGCGTGAATCAATGTCAACCACCGCCGCAGAATCACCGCCGGCGAAACGAA 150
||||| |||||| |||||||||||| ||| ||||||| |||||||| |||||||| ||||
Sbjct 1 AACTGTAACGGCCTGAATCAATGTCTACCGCCGCCGCGGAATCACCACCGGCGAAGCGAA 60
Query 151 GAAGAACAGTCACCGGAAATGAAAACTCCGCTTTAATCGAAGGACTTCCCGATCACATCT 210
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 61 GAAGAATAGTCACCGGAAATGAAAACTCGGCTTTAATCGAAGGACTTCCCGATCATATAT 120
Query 211 CAGAGATCTGTCTGTCTC-TCGTTCACCGTCCGTCGTTACTCTCCGCCGTGTGTACACGG 269
||||||||||||| || | ||| ||||||||||||||||||||||||| |||||||||
Sbjct 121 CAGAGATCTGTCTTTC-CAAAGTTAACCGTCCGTCGTTACTCTCCGCCGTATGTACACGG 179
Query 270 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCACTCTACGCTCTTTTC 329
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 180 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCTCTCTACGCGCTTCTC 239
Query 330 GTCGATTCAACATCGGATACGGGTCGGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 389
|| || ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 GTTGACTCAACCTCGGATCCGGGTCTGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 299
Query 390 CCGGTTTCTTCAAAATGGTATCCGCTTCCTCCTCCACCACCTGACCCGCCTCTTCACCGG 449
||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CCGGTTTATTCAAAATGGGATCCGCTTCCTCCTCCTCCACCTGACCCGCCTCTTCACCGG 359
Query 450 ATTCTTTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 509
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCTCTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 419
Query 510 GCCGGAAAACTCATTCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCGATCTCTCAC 569
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GCCGGGAAACTCATCCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCTATCTCTCAC 479
Query 570 CCGTTAATTTTCGATCCAATTTCGTCATCCTGGAGCTCCGGTCCTCGAATCGGATCTCCA 629
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 480 CCGTTAATTTTCGATCCAATTTCATCATCCTGGAGCTCCGGTCCTCAAATCGGATCTCCA 539
Query 630 AGACGGTGGTGCGCCACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 689
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGACGGTGGTGCGCTACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 599
Query 690 TCTCAGTTCTCATCAACCGTCGCGAAATCTGTCGAGAAATTAGATCTAACCGAACAAAAC 749
||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 600 TCTCAGTTCTCCTCAACCGTTGCGAAATCAATCGAGAAATTAGATCTAACCGATCAAAAC 659
Query 750 CGGAATAACCACCGGTTTAATTGGGAGAAATTGAGAGATATGAGAGATTTACGGTTTAGT 809
|| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 CGCAATAACCGGCGGTTTAATTGGGAGAAATTAAGAGATATGAGAGATTTACGGTTTAGT 719
Query 810 CGAGAAGCTATAGACGCTGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTTAAAGGA 869
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 CGAGAAGCTATAGATGCCGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTAAAAGGA 779
Query 870 GACGCGGTTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAACCTATGCCG 929
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GACGCTATTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAAGCTATGCCG 839
Query 930 GAGGAGATGTTGGTTGGATGGAGAGGCCCGGTTGCGGCGATGGAGGAGGAGATTCTTTAT 989
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 840 GAGGAGATGTTGGTTGGATGGAGAGGTCCGGTGGCGGCGATGGAGGAGGAGATTCTTTAT 899
Query 990 TCGGTggatgagaggagagggacagtgagaaagtacgatgatgagaagagagagtggaga 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCGGTGGATGAGAGGAGAGGGACAGTGAGAAAGTACGATGATGAGAAGAGAGAGTGGAGA 959
Query 1050 gaagtggttgtggttgaaggtggagaagagaTGCTTAAAGGAGCTACGCAAGTAACGGCG 1109
||||||| |||||||| |||||||||||| | ||||||||||||||||| || ||||||
Sbjct 960 GAAGTGGCGGTGGTTGATGGTGGAGAAGAGTTACTTAAAGGAGCTACGCAGGTTACGGCG 1019
Query 1110 GATTCCGGTAAACTTTGTGTTGTTACTGGT-GATGGGAAAATTGTTGTGGTGGATGTTGC 1168
||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 1020 GATTCAGGGAAACTTTGTGTTGTTAC-GGTTGATGGGAAGATTGTTGTGGTGGATGTTGT 1078
Query 1169 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGATTCCTGATGGACTTGAACCGGTTTCGGT 1228
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1079 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGCTTCCTGATGGGCTTGAACCGGTTTCGGT 1138
Query 1229 TCATGTTTTACCAAGAATGAGTCAACCGAATTTTTGCTGACGTAtttttttt 1280
|||||| ||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1139 TCATGTATTACCAAGAATGAGTCAACCGGAGTTTTGCTGACGTTTTTTTTTT 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5