BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31580.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg473621 jgi|Araly1|473621|fgenesh2_kg.1__3575__AT1G31580.1 291 6e-78 > Ahg473621 jgi|Araly1|473621|fgenesh2_kg.1__3575__AT1G31580.1 Length=623 Score = 291 bits (157), Expect = 6e-78 Identities = 229/260 (88%), Gaps = 19/260 (7%) Strand=Plus/Plus Query 1 AACctctcttttcttatctctcaaatattttattcttattctctaccatatatcttcacc 60 ||||| |||| ||||||||||| || |||||||||||||||||||||||||||| ||||| Sbjct 1 AACCTTTCTTCTCTTATCTCTCCAAGATTTTATTCTTATTCTCTACCATATATCCTCACC 60 Query 61 tctctattctatataAATGCATAAACTTGAGTCACGCTGATAAGTAAATTAAGAAAGGAA 120 ||||||||||||||||||||||||||||||||||| |||||||||||||| || | | Sbjct 61 TCTCTATTCTATATAAATGCATAAACTTGAGTCACACTGATAAGTAAATT----AA-G-A 114 Query 121 TATTCATTAAGATGGCAtcttctatagtctcttccatgtttctctttctccttcttcttc 180 | | | | || || ||| | |||||||||||||||||||||||||||||||| Sbjct 115 -A---A-T--G--GG-ATATTC--GA-TCTCTTCCATGTTTCTCTTTCTCCTTCTTCTTT 161 Query 181 ttGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGGAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 162 TTGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGAAG 221 Query 241 AGATAAATTATGCTGATCCA 260 |||||||| ||||||| ||| Sbjct 222 AGATAAATCATGCTGACCCA 241 Score = 285 bits (154), Expect = 3e-76 Identities = 216/243 (89%), Gaps = 16/243 (7%) Strand=Plus/Plus Query 351 AGAAGGTGCCCTTTCTGTTATCCTCCTCCTCCCCCAAAGGCTTTCCCAAAAAACTCACCA 410 |||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||| Sbjct 359 AGAAGGTGCCCTTTCTGTAAGCCTCCTCCTCCCCCAAAGGCTTTCCCAAGCAACACACCT 418 Query 411 AGTCACTGATGTCACTATAGCTACGAA-A-T--TGCGTCAATAAATGTATGCACGTTAAT 466 |||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 419 AGTCACTGATCTCACTATAGCTACGAATATTAATGCGTCAATAAATGTATGCACGTTAAT 478 Query 467 TTGTTTCATTTGTGATGTGTGG-GGCTCTTTATCTATTATATGCATG-T-CACGTGTTTG 523 |||||||||||||||||| || |||| |||||||||||||||||| | || ||||||| Sbjct 479 CTGTTTCATTTGTGATGTG-GGTGGCTATTTATCTATTATATGCATAATGCATGTGTTTG 537 Query 524 TCATATTTGCAATGTATCATGTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCA- 582 |||||||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCATATTTGC---G-AT---GTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCAT 590 Query 583 ATT 585 ||| Sbjct 591 ATT 593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5