BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31580.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473621 jgi|Araly1|473621|fgenesh2_kg.1__3575__AT1G31580.1         291    6e-78


> Ahg473621 jgi|Araly1|473621|fgenesh2_kg.1__3575__AT1G31580.1
Length=623

 Score =  291 bits (157),  Expect = 6e-78
 Identities = 229/260 (88%), Gaps = 19/260 (7%)
 Strand=Plus/Plus

Query  1    AACctctcttttcttatctctcaaatattttattcttattctctaccatatatcttcacc  60
            ||||| |||| ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct  1    AACCTTTCTTCTCTTATCTCTCCAAGATTTTATTCTTATTCTCTACCATATATCCTCACC  60

Query  61   tctctattctatataAATGCATAAACTTGAGTCACGCTGATAAGTAAATTAAGAAAGGAA  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||    || | |
Sbjct  61   TCTCTATTCTATATAAATGCATAAACTTGAGTCACACTGATAAGTAAATT----AA-G-A  114

Query  121  TATTCATTAAGATGGCAtcttctatagtctcttccatgtttctctttctccttcttcttc  180
             |   | |  |  || || |||   | |||||||||||||||||||||||||||||||| 
Sbjct  115  -A---A-T--G--GG-ATATTC--GA-TCTCTTCCATGTTTCTCTTTCTCCTTCTTCTTT  161

Query  181  ttGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGGAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  162  TTGTATTTCCACATATAGATAATGTCCTTGGCGCACGAATGGAACTCCGTGAACTTGAAG  221

Query  241  AGATAAATTATGCTGATCCA  260
            |||||||| ||||||| |||
Sbjct  222  AGATAAATCATGCTGACCCA  241


 Score =  285 bits (154),  Expect = 3e-76
 Identities = 216/243 (89%), Gaps = 16/243 (7%)
 Strand=Plus/Plus

Query  351  AGAAGGTGCCCTTTCTGTTATCCTCCTCCTCCCCCAAAGGCTTTCCCAAAAAACTCACCA  410
            |||||||||||||||||| | ||||||||||||||||||||||||||||  ||| |||| 
Sbjct  359  AGAAGGTGCCCTTTCTGTAAGCCTCCTCCTCCCCCAAAGGCTTTCCCAAGCAACACACCT  418

Query  411  AGTCACTGATGTCACTATAGCTACGAA-A-T--TGCGTCAATAAATGTATGCACGTTAAT  466
            |||||||||| |||||||||||||||| | |  |||||||||||||||||||||||||||
Sbjct  419  AGTCACTGATCTCACTATAGCTACGAATATTAATGCGTCAATAAATGTATGCACGTTAAT  478

Query  467  TTGTTTCATTTGTGATGTGTGG-GGCTCTTTATCTATTATATGCATG-T-CACGTGTTTG  523
             |||||||||||||||||| || |||| ||||||||||||||||||  | || |||||||
Sbjct  479  CTGTTTCATTTGTGATGTG-GGTGGCTATTTATCTATTATATGCATAATGCATGTGTTTG  537

Query  524  TCATATTTGCAATGTATCATGTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCA-  582
            ||||||||||   | ||   ||||||||||||||||||||||||||||||||||||||| 
Sbjct  538  TCATATTTGC---G-AT---GTATGTGGCTCTTTATCTATTATATGCATGTGTTTGTCAT  590

Query  583  ATT  585
            |||
Sbjct  591  ATT  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5