BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31780.1 Length=2295 Score E Sequences producing significant alignments: (Bits) Value Ahg922244 jgi|Araly1|922244|scaffold_103525.1 3290 0.0 > Ahg922244 jgi|Araly1|922244|scaffold_103525.1 Length=2083 Score = 3290 bits (1781), Expect = 0.0 Identities = 1984/2084 (95%), Gaps = 6/2084 (0%) Strand=Plus/Plus Query 95 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGGCTCTCCCGGA 154 ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 1 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGACTTTCTCGGA 60 Query 155 AATTGAAGAAGGTATTGGATTGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 214 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATTGAAGAAGGTATTGGAATGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 120 Query 215 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGAGAAATCTCAGATCGACGA 274 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGCGAAATCTCAGATCGACGA 180 Query 275 TCGAGAAACGAGCGCTTCAGATCAACAGTGAGTTCCTTAACGCGGCTGATTCGACTCAGA 334 ||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||| Sbjct 181 TCGAGAAGCGAGCGCTTCAGATCAACACCGAGTTCCTTAGGGCGGCTGATTCGACACAGA 240 Query 335 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 300 Query 395 CGGCGGCGCTAAGTAGTTCCGCGGCTACCACTAGCGATATTATTAGTACTACTGAGAGGC 454 ||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 301 CGGCGGCGCTAAGCAGCTCCGCGGCTACCACTAGTGATATTATCAGTACTACTGAGAGGT 360 Query 455 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 420 Query 515 ATTACCAGCTTTCGAATGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 574 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATTACCAGCTTTCGAACGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 480 Query 575 TCTTCCAAGCGTTGTCTCATGTTCAGGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 634 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 481 TCTTCCAAGCGTTGTCTCACGTTCAAGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 540 Query 635 CGCATCATCAGCGTGCGGGTTTGGAATTGATGGATATGATGGCTGTGTATCAAGAAGGAG 694 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 CGCATCATCAGCGTGCGGGTTTGGAACTGATGGATATGATGGCTGTGTATCAAGAAGGAG 600 Query 695 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTCGGTGATACGGATA 754 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 601 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTGGGTGATACGGATA 660 Query 755 ATCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGTTGTCTCAAAGAAAGACCCGTTC 814 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 661 ACCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGCTGTCTCAAAGAAAGACCCGTGC 720 Query 815 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCGTTATTTAGAAGAT 874 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 721 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCTTTATTTAGAAGGT 780 Query 875 TTATTAGCGCTCTTACACGTGGAGGGCCTGGAGGAATGCCTAGACCCATTGAAGTTCATG 934 ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 781 TTATTAGTGCTCTTACACGTGGAGGACCTGGAGGAATGCCTAGACCCATAGAAGTTCATG 840 Query 935 CCCATGACCCCTTAAGATACGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 994 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 841 CCCATGACCCCTTACGATATGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 900 Query 995 CAGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACTCAGCTGACCATCAATCAAACG 1054 | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 901 CCGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACGCAGCTGACCATAAATCAAACG 960 Query 1055 CAAAAAATACCTCTGAGAATATTGCCCTAAAGGCAGGAGAATCTGACTTT-ACATTTGTT 1113 |||| |||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||| Sbjct 961 CAAAGAATACCTCTGAGAATATTGCCCGAAAGGCAGCAGAATCTGA-TTTCACATTTGTT 1019 Query 1114 CTGGATAGAATTTTTGAAGGAGTTTGCCGTCCATTTAAAGTGAGAGTCGAACAAGTTCTG 1173 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1020 CTGGATAGAATTTTGGAAGGAGTTTGCCGGCCATTTAAAGTGAGAGTCGAACAAGTTTTG 1079 Query 1174 CAGTCACAACCAAGTCTTATTATTTCTTACAAACTCACCAACACCTTGGAGTTCTACAGC 1233 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1080 CAGTCACAACCAAGTCTTATTATTTCTTATAAACTCACTAACACCTTGGAGTTCTACAGC 1139 Query 1234 TACACTATCTCAGATTTACTTGGGCGAGACACTGCACTGTGTAATACAATTGGAATGGTA 1293 |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 1140 TACACTATCTCAGATTTACTCGGCCGAGACACTGCACTGTGTAATACAATTGGGATGGTA 1199 Query 1294 AAGGATGCTGCACAGAAAACCTTCTTTGACATTCTTAAAACCCGAGGAGAGAAACTTCTA 1353 ||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct 1200 AAGAATGCTGCACAGAAAACTTTCTTTGACATTCTTAAAACCCGAGGGGAAAAACTTCTA 1259 Query 1354 CGATACCCTCCACCTGTAGCCGTTGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1413 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1260 CGATACCCTCCACCTGTAGCCGTCGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1319 Query 1414 TCTCTTACTCTTGAGATTATCGAGAATTACAACAGTATGATGGTTTCTGCTTCAGGAGAG 1473 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1320 TCTCTAACTCTTGAGATAATCGAGAATTACAACAGTATGATGGTTTCTGCCTCAGGAGAG 1379 Query 1474 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCTATTATTAAGATGTGCGAG 1533 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1380 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCAATTATCAAGATGTGCGAG 1439 Query 1534 CAAGCAGCAGAGGCGCATAAATCAAAGAAGAGCGGCCAATTACCCAGAAGAAGCAGAACA 1593 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 1440 CAAGCAGCAGAGGCGCATAAATCGAAGAAGAGCGGCCAGTTACCCAGAAGAAGTAGAACA 1499 Query 1594 AGTTCTGACTCAAGCCAGTTAACCTCAGTCGATGCTCTACTCTCTAGCAGCCCATCCCCA 1653 || | |||||||||||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct 1500 AGCACCGACTCAAGCCAGCTAACCTCAGTCGATGCTCTACTCTCTAGTAGCCCGTCCCCA 1559 Query 1654 CCACAGAACAACGAAACACCCTCAAAAATATTCCTCATCAACTGTTTATGCGCGATCCAA 1713 ||||| |||||||||||||| || ||||||||||||||||||||| ||||||| |||||| Sbjct 1560 CCACATAACAACGAAACACCATCGAAAATATTCCTCATCAACTGTCTATGCGCAATCCAA 1619 Query 1714 CAACCATTGCTAAGACACGATGTTGCGTCCCAATACGTAACCAACATTGGATTAATGATC 1773 ||||| ||||||||||| || |||||| |||||||||||||||||||||||| ||||||| Sbjct 1620 CAACCGTTGCTAAGACATGACGTTGCGGCCCAATACGTAACCAACATTGGATCAATGATC 1679 Query 1774 GAGAACCACATAAACCTCCTCGTCCAGAATGAAGTTGACACACTACTCCACAAATGCGGT 1833 |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct 1680 GAGAACCACATAAACCTCCTTGTCCAGAATGAAGTTGACACACTACTACAAAAATGCGGT 1739 Query 1834 CTTTCAGACAAAATGCAAATCTTCCGCTCTTCCACATCCGAA-CTTCCCTTATCTGAACG 1892 ||||| |||||||||||||||||||||||||| ||||||||| || |||| |||||||| Sbjct 1740 CTTTCGGACAAAATGCAAATCTTCCGCTCTTCGACATCCGAAGCTCCCCTG-TCTGAACG 1798 Query 1893 ACAAGACACTTCACCCGCGATGCTATCCGAATGCCTCAAGGCATTCTTCGGCCTCGTTTT 1952 |||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| Sbjct 1799 ACAAGACACTTCACCCACAATGCTATCCGAATGCCTCAAGGCATTCTTCAGTCTCGTTTT 1858 Query 1953 GGGAAGCGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAGGTCCCTAAACTCAGGTCTGA 2012 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1859 GGGAAGTGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAAGTCCCTAAACTCAGGTCTGA 1918 Query 2013 AGCTTGTGTCAGGGTCGCTAAAACTTTAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 2072 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1919 AGCTTGTGTCAAGGTCGCTAAAACTATAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 1978 Query 2073 AACAGATCAACAAAATGGATATCCAGATCC-AAAGTCTCTCGCCCGACATCCACCAGATC 2131 ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1979 AACGGATCAACAAAATGGATATCCAGATCCGAAA-TCTCTCGCCCGACATCCACCAGATC 2037 Query 2132 AGATCCGAACGATTCTTGGTATATGAATGTACGCTTGttttttt 2175 | |||||||| ||||||||||||||||||||||||| || |||| Sbjct 2038 AAATCCGAACCATTCTTGGTATATGAATGTACGCTTCTTATTTT 2081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86426765905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5