BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31920.1 Length=1994 Score E Sequences producing significant alignments: (Bits) Value Ahg473380 jgi|Araly1|473380|fgenesh2_kg.1__3334__AT1G31920.1 3014 0.0 > Ahg473380 jgi|Araly1|473380|fgenesh2_kg.1__3334__AT1G31920.1 Length=1948 Score = 3014 bits (1632), Expect = 0.0 Identities = 1803/1886 (96%), Gaps = 10/1886 (1%) Strand=Plus/Plus Query 115 ACATTTTCGGACACCAAAATCCCTAGTTTCTTAATGGTTATGAGGAGAGGATGATCAAGG 174 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 67 ACATTTTCGGACACC-AAATCCCTAGTTTCTTAATGGTTACGAGGAGAGGATGATCAAGG 125 Query 175 CA-C--CAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACTCATAACCCAGAAG 231 || | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 126 CACCAACAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACACATAACCCAGAAG 185 Query 232 TCAACAACTTTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCCACAACA 291 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 186 TCAACAACTGTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCAACAACA 245 Query 292 TAGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTATTCTTCTT 351 | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 246 TTGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTGCTCTTCTT 305 Query 352 CATTCTCAGCCAGCAGCGTTCTCGCAAAATGCGCTCACTCG-GGATGGGAGAACAGTATG 410 |||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 306 CATTCTCAGCTAGCAGCGTTCTCGCAAAATGCACTCACTCGAGG-TGGGAGAACAGTATG 364 Query 411 AATTACGCAGCTTCCATATTCAGAGGCATAGATGATCCTTGTACCTTTGATTTCAATACA 470 |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 365 AATTACGCAGCTTCGATATTCAGAGGCATTGATGATCCGTGTACCTTTGATTTCAATACA 424 Query 471 ATGATTAGAGGGTATGTTAACGTAATGAGTTTCGAGGAAGCATTGTGTTTTTACAATGAG 530 |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 425 ATGATTAGAGGGTATGTTAATGAAATGAGTTTCGAGGTAGCATTGTGTTTTTACAATGAG 484 Query 531 ATGATGCAGAGAGGGAATGAGCCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 590 |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 485 ATGATGGAGAGAGGGATTGAGTCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 544 Query 591 ACTCGTTTGAAGTCAATTCGAGAAGGGAAGCAGATTCATGGGCAAGTGTTTAAGCTCGGT 650 |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 545 ACTCGTTTGAAGGCGATTCGAGAAGGGAAGCAGATTCATGGGCACGTGTTTAAGCTCGGT 604 Query 651 CTTGAAGCTGACGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 710 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 CTTGAAGCGGATGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 664 Query 711 ATGGAACTTTCTTCTGCGGTTTTTGAGAAACTGGAATCTAAAACAGCTGCGTCGTGGAGC 770 ||||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||||| Sbjct 665 ATGGAACTTTCTTCTACAGTTTTTGAGAAACTGGAATTTAAATCTGCTGCGTCGTGGAGC 724 Query 771 TCGATGGTCTCTGCTCGTGCAGGCATGGGAATGTGGAGCGAATGCTTGTTACTATTCCGT 830 || ||||| || ||| ||| |||||||||| ||||||||||||||||| | |||| ||| Sbjct 725 TCAATGGTTTCAGCTTGTGTAGGCATGGGATTGTGGAGCGAATGCTTGATGTTATTTCGT 784 Query 831 GGAATGTGTAGCGAAACGAATTTGAAGGCGGAAGAAAGTGGAATGGTTAGTGCTCTCTTA 890 | ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||| | Sbjct 785 GAAATGTGTAGAGAAACGAATTTGAAGGCTGAGGAAAGCGGAATGGTTAGTGCTCTCTCA 844 Query 891 GCTTGTGCCAACACCGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 950 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GCTTGTGCCAACACAGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 904 Query 951 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTAGTAGATATGTACGTTAAATGC 1010 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 905 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTTGTAGATATGTACGTTAAATGC 964 Query 1011 GGGTGCT-TAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1069 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 GGGTG-TATAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1023 Query 1070 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1083 Query 1130 GTTCTCTAAGATGATCAAAGAAGGTTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1189 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1084 GTTCTCTGAGATGATCAAAGAAGGCTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1143 Query 1190 CAATGCATGTAGTCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGCAGAAATGTT 1249 |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1144 CAATGCCTGTAGCCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGAAGAAATGTT 1203 Query 1250 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTACGGCTGTCTTGTAGATCTTCTGGG 1309 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1204 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTATGGCTGTCTTGTAGATCTTCTGGG 1263 Query 1310 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCAT-ACCAATTGAGAAAA 1368 ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| Sbjct 1264 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCATGTCC-ATTGAGCAAA 1322 Query 1369 ATGATGTTATCTGGAGAACCTTCTTAAGTCAATGCAGAGTTCGTCAGAACATTGAGCTAG 1428 |||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1323 ATGATGTTGTCTGGAGAAGCTTCTTAAGCCAATGCAGAGTTCATCAGAACATTGAGCTAG 1382 Query 1429 GCCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1488 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1442 Query 1489 TGATCTCTAACTTGTATTCACAAGGTCAAATGTGGGATGATGTAGCCAGAACTCGAACAG 1548 | ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 1443 TAATCTCTAACATGTATTCACAAGCTCAAATGTGGGATGATGTAGCCAGAGCTCGAACAG 1502 Query 1549 AAATCGCTATCAAGGGTTTGAAACAAACCCCGGGTTTTAGCATCGTCGAGCTAAAAGGTA 1608 |||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| Sbjct 1503 AAATCGCTATCAAGGGTTTGAAGCAAACCCCGGGTTTTAGTATTGTCGAGGTAAAAGGTA 1562 Query 1609 AAACCCACAGGTTCGTTTCACAAGATCGATCGCACCCAAAATGCAAAGAAATCTACAAGA 1668 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1563 AAACCCACAGGTTTGTTTCACAAGATCGATCGCACCCACAATGCAAAGAAATCTACAAGA 1622 Query 1669 TGCTACACCAGATGGAATGGCAACTAAAATTCGAAGGATATTCACCAGACTTGACACAGA 1728 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1623 TGCTACACCAGATGGAATGGCAACTAAAGTTCGAAGGATATTCACCAGACTTGACACAGA 1682 Query 1729 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGATTAAAAGGACACAGCCAAAAGG 1788 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1683 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGACTAAAAGGACACAGCCAAAAGG 1742 Query 1789 TGGCTATTGCCTTTGGACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1848 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1743 TGGCTATTGCCTTTGCACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1802 Query 1849 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1803 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1862 Query 1909 GAGAGATTGTTGTAAGAGACAGAAACAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1968 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1863 GAGAGATTGTTGTAAGAGACAGAAATAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1922 Query 1969 GTAAAGATTATTGGTAGGTTTAAATC 1994 |||||||||||||||||||||||||| Sbjct 1923 GTAAAGATTATTGGTAGGTTTAAATC 1948 Score = 93.5 bits (50), Expect = 6e-18 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11 ACTTGTGGCTCATATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAAACCCTCA 66 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ACTTGTGGCTCTTATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAACCCCTCA 56 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74961602160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5