BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31940.1 Length=900 Score E Sequences producing significant alignments: (Bits) Value Ahg473384 jgi|Araly1|473384|fgenesh2_kg.1__3338__AT1G31940.1 1014 0.0 > Ahg473384 jgi|Araly1|473384|fgenesh2_kg.1__3338__AT1G31940.1 Length=842 Score = 1014 bits (549), Expect = 0.0 Identities = 648/696 (93%), Gaps = 6/696 (1%) Strand=Plus/Plus Query 187 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCA-CTCATCGACGAACACAAAG 245 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 152 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCAGC-CATCGACGAACACAAAG 210 Query 246 TGCAATCGATGATAAGGAAGTATTGGCTCCAAATTCTGATGTTATTGCAGCAACCACCAC 305 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 211 TGCAATCGATGATAAGGAAGTGTTGGCTCCAAATTCTGATGTTGTTGCAGCAACTACCAC 270 Query 306 AACTGCAACTACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 365 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 AACTGCAACAACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 330 Query 366 TCCGGTCGAGCCGTTAGACAACGATCTACCGATTCAGTGTCCATTACCTGAACCATCCAT 425 |||||||||||| || || |||||| ||||||||||||||||||| |||||||||||||| Sbjct 331 TCCGGTCGAGCCTTTGGATAACGATTTACCGATTCAGTGTCCATTGCCTGAACCATCCAT 390 Query 426 TCTAAATGATGGGAGAATCTGGAAGGAGAGAGTATCAGCGTCTATGAGGAGAAAAGGTGA 485 ||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 391 TCTTAATGATGGAAGAATCTGGAAGGAGAGAGTATCGGCGTCTATGATGAGAAAAGGTGA 450 Query 486 TTTGCAGATTGTGAAAGATGAGGCTGCTTCTGAGTCTGATGGCTCAGCACCGAAACCGCC 545 || |||||||| |||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 451 TTCGCAGATTGCGAAAGATGAGGCTGCTTCTGAGTCTGATGGATCCGCACCAAAACCGCC 510 Query 546 TCGCCCGCCTCAGCCAAATCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 605 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 511 TCGCCCGCCTCTGCCAAACCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 570 Query 606 GCTAAATCTACTAGAAGAATGCAATGCGATGCCACCGGTAACATCTAAGAATGGATGAAC 665 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 571 GCTAAATCTACTAGAAGAATGCAGCGCGATGCCGCCGGTAACATCTAAGAATGGATGAAC 630 Query 666 AAAGTTGCTTAAACTCGATATTTATCACACCGATACAAGATTGTTCCTTACAACCACTCT 725 |||||| |||||||||||||| ||| ||||||||||||| |||||||| | ||| ||||| Sbjct 631 AAAGTTCCTTAAACTCGATATATATTACACCGATACAAGCTTGTTCCTCAAAACAACTCT 690 Query 726 CGAATCTTTGTTTTTCGTTGTTTACGATTTTTACTTATGTGTGTGCCAGAACAAAACCAA 785 |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || Sbjct 691 TGAATCTCTGTTTTTCATTGTTTACGATTTT-ACTTATGTGTGTGCCAGAACAAAACTAA 749 Query 786 ATCATAGTGTATGTTATATAGATTATACAGGCAACTAAAATTCATTAAGCTTCTGCTCTA 845 |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||| Sbjct 750 ATCATAGTGTATGTTATATATATTATATAGGCAACTAAGGTTCATTAAGCTTATGCTCTA 809 Query 846 TGTACCTCAACAACACCAATATTCTACAATGGAAGT 881 | || ||||||| | | | ||||||||||||||||| Sbjct 810 TATATCTCAACA-C-CGA-TATTCTACAATGGAAGT 842 Score = 132 bits (71), Expect = 5e-30 Identities = 123/145 (85%), Gaps = 15/145 (10%) Strand=Plus/Plus Query 1 AAATCAAAAAGCATTTATCATCCATTCATT---C-A---CC--TGGAGATATAAAGCAAC 51 ||| |||||||||||||||||||||||||| | | || || ||||||||||||| Sbjct 1 AAACCAAAAAGCATTTATCATCCATTCATTCACCAAGTTCCTTTGAAGATATAAAGCAA- 59 Query 52 CTTCTCTTTTTCTAAGTGGCTCAAGTTAAATTTCTCTTTTGTGTTTCTTCGTCTTCTTCA 111 | | || |||| ||||||| | ||| |||||||||| ||| ||||||||||||||||||| Sbjct 60 CGT-TC-TTTT-TAAGTGGTTGAAGATAAATTTCTC-TTT-TGTTTCTTCGTCTTCTTCA 114 Query 112 TACAAAGTCAAGAATCAAAACCAAG 136 |||||||||||||||||||| |||| Sbjct 115 TACAAAGTCAAGAATCAAAATCAAG 139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33357552375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5