BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32060.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922278 jgi|Araly1|922278|scaffold_103559.1 2518 0.0
> Ahg922278 jgi|Araly1|922278|scaffold_103559.1
Length=1516
Score = 2518 bits (1363), Expect = 0.0
Identities = 1468/1519 (97%), Gaps = 5/1519 (0%)
Strand=Plus/Plus
Query 21 ATTTCTTTCATTCTATCCTAAATCCTCATCACTCAACCTGAGCTCACAAAGCTAAACaaa 80
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ATTTCTTTCATTCTATCCTAAATCCTCATCACTCAACCTGAGCTCACAAAACTAAAC--A 58
Query 81 aaaaaaaGAGCTTAGGCGGAGAAGAAGAGGAGACC-AAAACACCAAACAAACAACAATGG 139
|| |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 59 AACAAAAGAGCTTAGGCGGAGAAGAAGAGGAAACCAAAAACACCAAACCAACAACAATGG 118
Query 140 CTGTCTCAACTATCTACTCAACACAAGCTCTCAATTCAACTCATTTCTTAACCTCTTCTT 199
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 119 CTGTCTCAACTATCTACTCAACACAAGCCCTTAATTCAACTCATTTCTTAACCTCTTCTT 178
Query 200 CCTCCTCCAAACAAGTCTTCCTCTACCGTCGTCAACCACAAACCAACCGTAGATTCAACA 259
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179 CCTCCTCCAAACAAGTCTTCCTCTACCGTCGTCAACCACAAACCAACCGGAGATTCAACA 238
Query 260 CACTCATCACTTGCGCACAAGAAACCATCGTGATCGGACTAGCTGCTGACTCTGGCTGCG 319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 CACTCATCACTTGCGCACAAGAAACCATCGTGATCGGACTAGCTGCCGACTCTGGCTGCG 298
Query 320 GCAAAAGTACCTTTATGCGGAGGCTCACCAGCGTCTTTGGTGGCGCTGCTAAGCCACCAA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCAAAAGTACCTTTATGCGGAGGCTCACCAGCGTCTTTGGTGGCGCTGCTAAGCCACCAA 358
Query 380 AAGGCGGGAACCCTGATTCCAACACACTCATCAGCGACACGACCACTGTGATCTGTCTTG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGGCGGGAACCCTGATTCCAACACACTCATCAGCGACACGACCACTGTGATCTGTCTTG 418
Query 440 ATGATTACCATTCTTTGGATAGGTACGGTAGGAAAGAGCAGAAAGTCACCGCTTTGGACC 499
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGATTACCATTCCTTGGATAGGTACGGTAGGAAAGAGCAGAAAGTCACCGCTTTGGACC 478
Query 500 CACGCGCCAATGACTTTGATCTCATGTATGAGCAAGTCAAAGCTCTTAAGAATGGTATAG 559
|||| || ||||||||||||||||||||||| |||||||| |||||||||| |||| | |
Sbjct 479 CACGAGCTAATGACTTTGATCTCATGTATGAACAAGTCAAGGCTCTTAAGAGTGGTGTTG 538
Query 560 CCGTCGAGAAACCGATTTATAACCATGTCACTGGACTTCTTGACCCTCCGGAGCTTATTC 619
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 539 CCGTTGAGAAACCGATTTATAACCATGTCACTGGACTTCTTGACCCGCCTGAGCTTATTC 598
Query 620 AGCCTCCTAAGATTCTTGTCATCGAAGGTCTTCACCCAATGTTTGATGAGCGAGTAAGAG 679
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 AGCCTCCTAAGATTCTTGTCATCGAAGGTCTTCACCCAATGTTTGATGAGAGAGTAAGAG 658
Query 680 ACTTACTAGACTTCAGTATCTACTTGGACATTAGCAACGAAGTCAAATTCGCTTGGAAAA 739
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 ACTTACTAGACTTCAGTATCTACTTAGACATTAGCAACGAAGTCAAATTCGCTTGGAAAA 718
Query 740 TTCAGAGGGACATGGCTGAAAGAGGTCACAGTTTGGAGAGCATCAAAGCGAGTATCGAAG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCAGAGGGACATGGCTGAAAGAGGTCACAGTTTGGAGAGCATCAAAGCGAGTATCGAAG 778
Query 800 CCCGAAAGCCCGACTTCGATGCATTCATCGACCCGCAAAAGCAGTACGCGGATGCGGTCA 859
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CCCGAAAGCCCGACTTCGATGCATTCATCGACCCGCAAAAGCAGTATGCGGATGCGGTCA 838
Query 860 TAGAAGTGCTTCCTACGACTCTGATCCCAGATGACAACGAAGGGAAAGTGTTGAGAGTGA 919
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAAGTGCTTCCTACGACGCTGATCCCAGATGACAACGAAGGGAAAGTGTTGAGAGTGA 898
Query 920 GATTGATAATGAAGGAAGGTGTTAAGTACTTCAGCCCGGTTTACCTGTTCGATGAAGGTT 979
|| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 899 GACTGATAATGAAGGAAGGAGTTAAGTACTTCAGCCCGGTTTATCTGTTTGATGAAGGTT 958
Query 980 CAACCATCTCGTGGATTCCTTGCGGCCGCAAACTCACTTGCTCGTACCCTGGCATCAAGT 1039
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAACAATCTCGTGGATCCCTTGCGGCCGCAAACTCACTTGCTCGTACCCTGGCATCAAGT 1018
Query 1040 TCAACTACGAACCTGACTCCTACTTCGACCATGAGGTATCAGTTTTGGAGATGGATGGAC 1099
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TCAACTACGAACCTGATTCATACTTCGACCATGAGGTATCGGTTTTGGAGATGGATGGAC 1078
Query 1100 AATTTGATAGACTGGACGAGCTGATTTACGTGGAAAGTCACTTGAGCAACCTCTCGACCA 1159
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 AGTTTGATAGACTGGACGAGCTGATTTACGTGGAGAGTCACTTGAGCAACCTCTCGACCA 1138
Query 1160 AATTCTACGGAGAAGTCACTCAACAAATGCTCAAACATGCTGATTTCCCGGGTAGCAACA 1219
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 AATTCTACGGCGAAGTCACTCAACAAATGCTCAAACATGCTGACTTCCCGGGTAGCAACA 1198
Query 1220 ACGGTACTGGTCTTTTCCAAACCATTGTTGGATTGAAGATCAGAGATCTCTATGAGCAGC 1279
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACGGGACTGGTCTATTCCAAACCATTGTTGGATTGAAGATCAGAGATCTCTATGAGCAGC 1258
Query 1280 TCATTGCCAACAAAGCCACTGCTCGTGCAGAAGCTAAAGCCTAAAACAAACGAAGCGAAG 1339
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1259 TCATTGCCAACAAAGCCACTGCTCGTGCAGAAGCTAAAGCCTAAAACAAACAAAGAGAAG 1318
Query 1340 CCAAATAGAACGCGTCGATAAATACATCCGCAGtttcttctttttcttatttctttcttt 1399
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1319 CCAAATAGAACGCGTCGATAAATCCATCCGCAGTTTCTTCTTTT-CTTATTTCTTTCTTT 1377
Query 1400 ctttATGCGTTGTTTACCGCGGATTTTCATGGCGAAAAGGACGGTCTTGCTTGTTT-GTA 1458
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 CTTTATGCGTTGTTTACCGCAGATTTTCATGGCGAAAAGGACGGTCTTGCTTGTTTTGTA 1437
Query 1459 ATTTGTGTGGAGATAAAAAGAAAAAGCCTGTAATGTAGAGAAGTGAATAGCAGAGCAATA 1518
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1438 ATTTGTGTGGAGATAAAAAGAAAAAGCATGTAATGTAGAGAAGTTAATAGCAGAGCAATA 1497
Query 1519 ACAGTTCAGTTTATAGAAC 1537
|||||||||||||||||||
Sbjct 1498 ACAGTTCAGTTTATAGAAC 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5