BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32080.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473391 jgi|Araly1|473391|fgenesh2_kg.1__3345__AT1G32080.1 2789 0.0
> Ahg473391 jgi|Araly1|473391|fgenesh2_kg.1__3345__AT1G32080.1
Length=1795
Score = 2789 bits (1510), Expect = 0.0
Identities = 1716/1814 (95%), Gaps = 20/1814 (1%)
Strand=Plus/Plus
Query 1 GTGCCGTCTCTTAGAATCACATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGCCGTCTCTCAGAATCGTATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60
Query 61 CCACTCCTATCTTCTCTCCTTTAGCTTCTTCTCCAGCAAGGAACCGTCTTTCTTGCTCTA 120
|||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||| |
Sbjct 61 CCACTCCTCTCTTCTCTCCTTTAGCTTTTTCTCCGGCAAGGAACCACCTTTCTTGCTCCA 120
Query 121 AGATCCGTTTCGGTTCCAAAAATGGGAAAATTCTCAATTCTGATGGTGCCCAGAAGTTGA 180
|||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 AGATCCGTTTCGATTCGAAACATGGGAGAATTCTCAATTCTAATGGTGCCCAGAAGTTGA 180
Query 181 ATCTCTCAAAATTCCGTAAACCCGATGGCCAAAGATTTCTACAAATGGGTTCTTCTAAAG 240
| |||| | | ||| | |||||||||||||||||||||||||| ||||
Sbjct 181 A--TCTC-----T-C--AAA----A----CAAAGATTTCTACAAATGGGTTCTTCCAAAG 222
Query 241 AGATGAACTTTGAGAGAAAACTCTCAGTCCAAGCTATGGATGGTGCAGGAACAGGAAACA 300
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 223 AGATGACCTTTGAGAGAAAACTCTCAGTTCAAGCCATGGATGGTGCAGGAACAGGAAACC 282
Query 301 CATCAACGATCTCTCGTAACGTAATTGCGATAAGTCACTTGTTGGTATCACTTGGGATCA 360
||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 283 CATCAACTATCTCTCGTAACGTGTTTGCGATAAGTCACTTGTTGGTTTCACTTGGGATCA 342
Query 361 TTCTTGCTGCAGACTATTTCTTGAAGCAGGCGTTTGTAGCAGCGTCTATTAAGTTCCCAA 420
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 TACTTGCTGCTGACTATTTCTTGAAGCAGGCGTTTGTAGCTGCGTCTATTAAGTTCCCAA 402
Query 421 GTGCTTTGTTTGGGATGTTCTGTATTTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 480
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 403 GTGCTTTGTTTGGGATGTTTTGTATCTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 462
Query 481 CTGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATCCAAAGAT 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 463 CCGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATACAGAGAT 522
Query 541 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTTGTTCTTCCTCTTTCTGTTAGAGATATTC 600
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 523 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTAGTTCTTCCTCTTTCTGTCAGAGATATTC 582
Query 601 CGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCACTTT 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 CGGCTGCTTCCGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCTCTTT 642
Query 661 GTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAG 720
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 643 GTGTAGCAGGGTTCACAGCAATTGCAGTGAGAAAAATGGTGAAAACCAAAATGACGGAAG 702
Query 721 CCGAGCCTATGGCAAAACCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 780
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CCGAACCTATGGCGAAGCCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 762
Query 781 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 822
Query 841 GAACTTCTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGGT 900
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 823 GAACTTGTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTCGGTTCTGGGT 882
Query 901 TGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCTATCTGCAGTAC 960
||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 883 TGCCATCTTCTATCAAGAAAGTTTTCCATCCGATAATCTGTTGCGCGTTATCAGCAGTAC 942
Query 961 TTGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TCGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1002
Query 1021 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAATGGGTTTTCTTGGCT 1080
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1003 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATATTAATGGGTTTTCTTGGCT 1062
Query 1081 CTGTCATTCTCTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1140
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTGTCATTCTGTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1122
Query 1141 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCGCTCTACTCCACTGCTC 1200
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1123 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCACTCTACTCCACTGCTC 1182
Query 1201 TTGTTGGACGTTTAGTCGGTTTAGAACCTTCTTTAACGGTTTCAATCCTACCTCGCTGCA 1260
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1183 TTGTTGGACGTTTAGTTGGTTTAGAACCATCTTTAACGGTTTCAATCCTACCTCGCTGCA 1242
Query 1261 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1302
Query 1321 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1303 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACACGTTGTTCTTG 1362
Query 1381 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1422
Query 1441 GACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCTTCCCTTTTGTGCAATAG 1500
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1423 GACTCGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCACTTCCCTTCTGTGCAATAG 1482
Query 1501 CTTATGCTCTTACCGGAATCTTCGGATCGTTACTGTGTTCTGTTCCTGCCGTCCGACAGA 1560
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1483 CTTATGCTCTCACCGGAATCTTCGGATCGTTACTGTGTTCTGTCCCTGCCGTCCGACAGA 1542
Query 1561 GTTTGCTAGCGGTCGTCGGCTGAGGATTGATGATGTGGCGAAACACGATTGATGGTCTCA 1620
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1543 GTTTGCTTGCGGTCGTCGGCTGAGGATTGATGATGTGGCGTCACACAATTGATGGTCTCA 1602
Query 1621 AAGCTGGCGAGTTACTTAAAATATGAG-AGCAGTTTGCTTTGGATGTCAAATAAGCTTGT 1679
|||| || ||||||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 1603 AAGCCGGAGAGTTACTTAAAATATG-GTAGCAGTTTGCTTTGGATGTAAAATAAGCTTGT 1661
Query 1680 ATTAATGAAAAAGATGATGGAAAATGTTTATTTATTTTATTTTATATATGTAAATGTTGT 1739
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 1662 ATCAATGAAAAAGATGATGGAAAATGCTTATTTATTTTATTTTATATATATAAATGTAGT 1721
Query 1740 GAGATTTGTACAACATACATAAATTTTATATAGGAGTAGGATGTCCCAGCTTTCCAAAAA 1799
|| |||||||||| ||| ||||||||||| || |||||||||| |||||||||||||| |
Sbjct 1722 GAAATTTGTACAAAATATATAAATTTTATTTAAGAGTAGGATGCCCCAGCTTTCCAAATA 1781
Query 1800 TTTGTCACAAAGGT 1813
|||| |||||||||
Sbjct 1782 TTTGGCACAAAGGT 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5