BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32100.1 Length=1129 Score E Sequences producing significant alignments: (Bits) Value Ahg473393 jgi|Araly1|473393|fgenesh2_kg.1__3347__AT1G32100.1 1548 0.0 > Ahg473393 jgi|Araly1|473393|fgenesh2_kg.1__3347__AT1G32100.1 Length=1058 Score = 1548 bits (838), Expect = 0.0 Identities = 1011/1089 (93%), Gaps = 33/1089 (3%) Strand=Plus/Plus Query 37 AAAAAATGGGAGAGAGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTTGGAGCGACTG 96 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AAAAAATGGGAGAGGGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTGGGAGCGACTG 60 Query 97 GATACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTACGTTT 156 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 GGTACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTATGTTT 120 Query 157 TGCAGAGGCCAGAGATTGGTCTCGAAATCGAGAAAGTCCAACTCTTTCTTTCTTTCAAGA 216 ||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct 121 TGCAGCGGCCAGAGATTGGTCTCGATGTCGAGAAAGTCCAACTCCTTCTCTCTTTCAAGA 180 Query 217 AACTCGGCGCACGTATCGTTGAAGGTTCTTTCTCCGACCATCAAAGCCTCGTATCCGCCG 276 ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 181 AACTCGGCGCACGAATCGTTGAAGGTTCTTTCTCCGACCACCAAAGCCTCGTCTCTGCCG 240 Query 277 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACA 336 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGCGTTCACTTCCGTAGCCATAACA 300 Query 337 TTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGCGGTTTT 396 | || || ||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 301 TCCTTGTTCAGCTCAAGCTTGTCGAAGCCATCAAAGAGGCTGGTAACGTCAAGCGGTTTT 360 Query 397 TACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGCTACCGCCCGGAAGAG 456 |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 361 TACCATCTGAATTTGGTATGGATCCACCGCGTATGGGACATGCGCTACCACCAGGAAGAG 420 Query 457 AAACCTTTGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCTTACA 516 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 AAACCTTCGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCATACA 480 Query 517 CTTACGTTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAA 576 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 481 CTTACATTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTATCTCAGATGGTAA 540 Query 577 CTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGTGGTGT 636 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 541 CTTTACTTCCTCCCAAAGAAAAAGTTAATATTTATGGTGACGGAAATGTAAAAGTTGTGT 600 Query 637 TTGCGGATGAAGATGATATCGCAAAATACACCGCGAAA-ACGTTAAACGATCCACGGACA 695 | |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct 601 TCGCGGATGAAGATGATATCGCAAAATACACCGC-AAAGACGTTAAACGATCCGCGGACA 659 Query 696 TTAAACAAAACCGTGAATATTAGACCTCCCGACAACGTTCTCACGCAGTTGGAATTAGTT 755 |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| Sbjct 660 TTAAACAAAACCGTGAATATAAGACCTCCCGACAACGTTCTCACTCAGATGGAATTAGTT 719 Query 756 CAGATCTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCACAAGAC 815 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 720 CAGATGTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCAGAAGAC 779 Query 816 TTCCTCGCCAACATTGAACAAATGGAGATTCCACACCAAGCAGGGATAGGACATTTCTAT 875 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 780 TTCCTTGCCAACATTGAACAAATGGAGATTCCACACCAAGCGGGGATAGGACATTTCTAT 839 Query 876 CACATTTTCTATGAAGGATGTCTCACTGATCACGAAGTCGGAGAAGACGAAGAAGCTTCT 935 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 840 CACATTTTCTACGAAGGATGTCTCACTGATCACGATGTCGGAGAAGACGAAGAAGCTTCT 899 Query 936 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCTCTGA 995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCT-T-- 956 Query 996 TTTGACCAAGTCTTATCTATACTAAATACACATATCAAAAGTTTGATGTTTTATATTCAT 1055 | | || | | || | || | ||||||||||||||||||||||||| Sbjct 957 T---A--AA-T---A-CT---CG---TA----T--CAAAAGTTTGATGTTTTATATTCAT 994 Query 1056 -TCATGTTCTGCTATATATGCAAATTTAAAAATATATTCTTCATGCAAGAAAAAATATTA 1114 | ||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 995 AT-ATGTTCTGCTATA----CAAATTTAAAAATATATTCTTCATGTAATAAAAAATATTA 1049 Query 1115 TCTTTGGTT 1123 ||||| ||| Sbjct 1050 TCTTTTGTT 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42087700368 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5